Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46821 * 2 1 4 4 H 1.08998 * 109.47166 * 304.87423 * 3 2 1 5 5 C 1.53000 * 109.46627 * 184.88242 * 3 2 1 6 6 S 1.81401 * 109.47099 * 180.02562 * 5 3 2 7 7 O 1.42102 * 110.54393 * 68.37010 * 6 5 3 8 8 O 1.42100 * 110.54014 * 291.62217 * 6 5 3 9 9 N 1.65597 * 104.45368 * 179.97438 * 6 5 3 10 10 C 1.46968 * 120.58866 * 269.71878 * 9 6 5 11 11 C 1.53815 * 108.39424 * 124.75878 * 10 9 6 12 12 N 1.46958 * 108.58190 * 49.63615 * 11 10 9 13 13 C 1.36936 * 120.59504 * 124.67078 * 12 11 10 14 14 H 1.08008 * 119.99851 * 211.66968 * 13 12 11 15 15 C 1.38806 * 120.00045 * 31.66770 * 13 12 11 16 16 N 1.31622 * 120.00264 * 11.35739 * 15 13 12 17 17 Si 1.86809 * 119.99955 * 191.35660 * 15 13 12 18 18 H 1.48495 * 109.46986 * 59.99515 * 17 15 13 19 19 H 1.48495 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46905 * 299.99975 * 17 15 13 21 21 C 1.46972 * 118.81100 * 304.64187 * 12 11 10 22 22 C 1.46958 * 120.59737 * 89.99768 * 9 6 5 23 23 O 1.42895 * 109.47107 * 64.88067 * 3 2 1 24 24 C 1.42901 * 113.99660 * 250.03189 * 23 3 2 25 25 H 1.09001 * 109.47095 * 294.44456 * 1 2 3 26 26 H 1.09001 * 109.47411 * 54.44706 * 1 2 3 27 27 H 1.09000 * 109.47143 * 174.44491 * 1 2 3 28 28 H 1.08998 * 109.46684 * 239.99872 * 2 1 3 29 29 H 1.09001 * 109.47197 * 120.00121 * 2 1 3 30 30 H 1.08995 * 109.47856 * 59.99719 * 5 3 2 31 31 H 1.09003 * 109.47104 * 299.99345 * 5 3 2 32 32 H 1.08992 * 109.60863 * 244.53462 * 10 9 6 33 33 H 1.08996 * 109.61412 * 5.05088 * 10 9 6 34 34 H 1.09002 * 109.74042 * 289.84567 * 11 10 9 35 35 H 1.08999 * 109.53200 * 169.30029 * 11 10 9 36 36 H 0.97002 * 119.99652 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.61231 * 295.48551 * 21 12 11 38 38 H 1.08998 * 109.61019 * 174.97331 * 21 12 11 39 39 H 1.08999 * 109.60786 * 354.94946 * 22 9 6 40 40 H 1.08996 * 109.61053 * 115.45676 * 22 9 6 41 41 H 1.09000 * 109.47628 * 305.10373 * 24 23 3 42 42 H 1.08996 * 109.47480 * 65.10918 * 24 23 3 43 43 H 1.09006 * 109.47034 * 185.10907 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9809 -0.8431 5 6 3.5650 1.4442 -0.1228 6 16 4.1698 3.1545 -0.1220 7 8 3.9746 3.7519 1.1524 8 8 3.7762 3.8230 -1.3125 9 7 5.8140 3.0115 -0.2579 10 6 6.6581 2.9169 0.9415 11 6 7.5086 1.6395 0.8369 12 7 8.1503 1.6112 -0.4849 13 6 9.5099 1.4929 -0.5971 14 1 10.0260 1.9581 -1.4241 15 6 10.2249 0.7751 0.3518 16 7 9.5886 0.0258 1.2271 17 14 12.0901 0.8727 0.3866 18 1 12.5080 2.2798 0.6111 19 1 12.6099 0.0199 1.4855 20 1 12.6350 0.3954 -0.9098 21 6 7.3066 1.7114 -1.6841 22 6 6.4557 2.9831 -1.5796 23 8 1.6595 2.0822 1.2198 24 6 0.6569 3.0879 1.0605 25 1 -0.3633 0.4253 0.9356 26 1 -0.3634 0.5975 -0.8361 27 1 -0.3633 -1.0228 -0.0995 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8553 0.9563 -1.0532 31 1 3.9980 0.9059 0.7203 32 1 7.3090 3.7891 1.0005 33 1 6.0279 2.8669 1.8294 34 1 6.8717 0.7626 0.9533 35 1 8.2726 1.6457 1.6144 36 1 10.0884 -0.4760 1.8899 37 1 6.6554 0.8396 -1.7472 38 1 7.9372 1.7650 -2.5716 39 1 5.6918 2.9770 -2.3571 40 1 7.0925 3.8601 -1.6960 41 1 0.9883 3.8178 0.3218 42 1 -0.2710 2.6258 0.7237 43 1 0.4885 3.5875 2.0146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420664314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = -90.130807 kcal Electronic energy + Delta-G solvation = -25018.102789 eV Core-core repulsion = 21419.685790 eV Total energy + Delta-G solvation = -3598.416999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.84978 -37.58226 -36.88489 -35.66853 -33.92254 -33.79298 -31.09731 -30.67536 -30.15156 -26.80515 -26.40460 -24.24447 -23.22116 -22.85288 -21.48076 -19.93724 -18.50579 -17.66004 -17.24493 -16.48954 -16.14156 -15.80786 -15.59275 -14.84048 -14.78476 -14.10187 -14.07430 -13.71180 -13.65101 -13.50812 -13.40357 -13.08724 -12.93946 -12.56950 -12.17333 -12.09155 -11.97724 -11.82167 -11.56697 -11.43901 -11.34039 -11.08058 -10.97284 -10.83336 -10.74968 -10.67401 -10.42546 -10.23503 -10.01929 -9.85174 -9.65738 -8.68947 -8.49240 -6.66275 -5.84914 -3.34588 0.49379 2.92848 3.34903 3.40741 3.41674 3.42977 3.99053 4.36319 4.43365 4.44844 4.56472 4.74112 5.02690 5.09652 5.13187 5.16204 5.20075 5.26536 5.33079 5.47149 5.51163 5.55580 5.72184 5.74579 5.77936 5.86650 5.94798 6.04211 6.04603 6.31127 6.37064 6.43757 6.63726 6.80220 6.89537 6.93367 7.27184 7.56965 7.72455 8.39592 9.13904 9.74788 10.33229 11.22348 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.003987 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.219976 B = 7021.601044 C = 7380.588521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.099 3.901 4 H 0.075 0.925 5 C -0.643 4.643 6 S 2.606 3.394 7 O -0.946 6.946 8 O -0.969 6.969 9 N -0.989 5.989 10 C 0.094 3.906 11 C 0.157 3.843 12 N -0.588 5.588 13 C -0.257 4.257 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.905 5.905 17 Si 0.907 3.093 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.130 3.870 22 C 0.103 3.897 23 O -0.375 6.375 24 C 0.022 3.978 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 1.938 -2.777 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.771 4.771 6 S 2.699 3.301 7 O -0.936 6.936 8 O -0.959 6.959 9 N -0.828 5.828 10 C -0.032 4.032 11 C 0.030 3.970 12 N -0.311 5.311 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.002 3.998 22 C -0.024 4.024 23 O -0.294 6.294 24 C -0.075 4.075 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.716 2.585 -2.402 17.084 hybrid contribution 1.046 -0.759 -0.217 1.311 sum -15.670 1.825 -2.619 15.992 Atomic orbital electron populations 1.21818 0.95406 1.02011 1.02013 1.21870 0.96350 0.95039 1.03593 1.21823 0.90488 0.95837 0.87917 0.90677 1.31018 1.04793 1.28933 1.12353 1.05026 0.73543 0.77311 0.74179 1.93571 1.84553 1.73474 1.42015 1.93547 1.82369 1.71106 1.48928 1.57446 1.22878 1.89244 1.13236 1.22450 0.93929 1.02307 0.84528 1.21299 0.95110 0.90797 0.89810 1.43853 1.02641 1.85248 0.99382 1.19152 0.81915 1.26553 1.11001 0.91714 1.25168 0.98248 0.96236 0.99627 1.69942 1.34521 1.30006 1.20405 0.86313 0.85217 0.77562 0.77271 1.20901 1.21581 1.20856 1.21326 0.93374 0.93277 0.91823 1.22040 0.97050 1.01218 0.82058 1.88055 1.58312 1.53167 1.29847 1.23020 0.90736 0.90422 1.03305 0.92087 0.92872 0.92256 0.90482 0.90349 0.84107 0.83862 0.91554 0.90359 0.95966 0.88188 0.93403 0.96125 0.91530 0.90508 0.91294 0.93985 0.93419 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.13 37.16 0.34 -0.95 16 2 C -0.13 -1.29 5.64 -26.73 -0.15 -1.45 16 3 C 0.10 1.18 2.29 -26.73 -0.06 1.12 16 4 H 0.08 0.80 7.58 -51.93 -0.39 0.40 16 5 C -0.64 -8.37 5.90 37.16 0.22 -8.15 16 6 S 2.61 42.44 5.21 -107.50 -0.56 41.88 16 7 O -0.95 -17.64 16.02 -61.90 -0.99 -18.63 16 8 O -0.97 -17.14 16.70 -57.54 -0.96 -18.10 16 9 N -0.99 -17.49 3.19 -113.01 -0.36 -17.85 16 10 C 0.09 1.81 6.52 -3.36 -0.02 1.79 16 11 C 0.16 3.56 5.48 -3.37 -0.02 3.54 16 12 N -0.59 -14.06 2.96 -171.76 -0.51 -14.57 16 13 C -0.26 -6.75 9.57 -15.06 -0.14 -6.90 16 14 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 15 C 0.01 0.16 5.03 -17.43 -0.09 0.08 16 16 N -0.90 -25.21 11.08 55.49 0.61 -24.59 16 17 Si 0.91 21.06 29.57 -169.99 -5.03 16.03 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.13 2.54 6.67 -3.59 -0.02 2.52 16 22 C 0.10 1.78 6.48 -3.60 -0.02 1.76 16 23 O -0.37 -4.99 9.03 -42.01 -0.38 -5.37 16 24 C 0.02 0.23 10.53 101.05 1.06 1.29 16 25 H 0.06 0.52 7.33 -51.93 -0.38 0.14 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.14 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.14 1.87 8.14 -51.92 -0.42 1.45 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.39 7.05 -51.93 -0.37 1.02 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 2.53 6.06 -51.93 -0.31 2.22 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 39 H 0.08 1.14 7.06 -51.93 -0.37 0.78 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.05 0.38 7.07 -51.93 -0.37 0.02 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -32.18 352.21 -8.99 -41.18 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.22 Total: 0.07 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 1.09 Total: -5.35 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.25 Total: -57.01 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.33 Total: -42.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 42.44 SS G_CDS: -0.56 Total: 41.88 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.18 -8.99 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420664314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.955 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds