Wall clock time and date at job start Fri Apr 10 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00425 * 2 1 4 4 H 1.08997 * 112.90724 * 21.74200 * 3 2 1 5 5 C 1.53787 * 113.61442 * 250.49689 * 3 2 1 6 6 C 1.53784 * 87.07923 * 270.88128 * 5 3 2 7 7 H 1.09004 * 113.61162 * 220.01809 * 6 5 3 8 8 N 1.46499 * 113.61434 * 89.11404 * 6 5 3 9 9 S 1.65601 * 120.00102 * 114.50672 * 8 6 5 10 10 O 1.42090 * 106.40558 * 178.54202 * 9 8 6 11 11 O 1.42106 * 106.39837 * 311.45782 * 9 8 6 12 12 N 1.65597 * 107.21796 * 64.99415 * 9 8 6 13 13 C 1.46504 * 119.99496 * 90.00302 * 12 9 8 14 14 C 1.46496 * 120.00318 * 270.00024 * 12 9 8 15 15 C 1.50702 * 109.46766 * 95.00610 * 14 12 9 16 16 H 1.08000 * 120.00076 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99869 * 180.02562 * 15 14 12 18 18 N 1.31509 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99770 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47570 * 59.99524 * 19 17 15 21 21 H 1.48507 * 109.47143 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47369 * 299.99442 * 19 17 15 23 23 C 1.53779 * 87.08045 * 334.56667 * 6 5 3 24 24 C 1.53006 * 113.61419 * 270.88427 * 23 6 5 25 25 C 1.53003 * 113.69268 * 139.99100 * 23 6 5 26 26 H 1.08993 * 109.47019 * 60.00223 * 1 2 3 27 27 H 1.08996 * 109.47357 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46862 * 300.00458 * 1 2 3 29 29 H 1.09004 * 113.61202 * 25.42881 * 5 3 2 30 30 H 1.08994 * 113.61447 * 156.33312 * 5 3 2 31 31 H 0.96997 * 120.00138 * 294.50235 * 8 6 5 32 32 H 1.09005 * 109.47224 * 90.00114 * 13 12 9 33 33 H 1.09003 * 109.47012 * 209.99889 * 13 12 9 34 34 H 1.09001 * 109.47499 * 330.00013 * 13 12 9 35 35 H 1.09000 * 109.47146 * 215.00151 * 14 12 9 36 36 H 1.08997 * 109.47246 * 335.00495 * 14 12 9 37 37 H 0.96998 * 119.99599 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.46686 * 177.00316 * 24 23 6 39 39 H 1.09000 * 109.46694 * 297.00069 * 24 23 6 40 40 H 1.08999 * 109.47134 * 57.00227 * 24 23 6 41 41 H 1.09000 * 109.47285 * 302.96375 * 25 23 6 42 42 H 1.09000 * 109.46654 * 62.95915 * 25 23 6 43 43 H 1.09001 * 109.47135 * 182.95442 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3310 2.0723 0.3719 5 6 2.6907 1.6767 -1.3282 6 6 3.9724 1.0479 -0.7568 7 1 4.8771 1.6070 -0.9958 8 7 4.0974 -0.3850 -1.0348 9 16 5.3152 -0.9356 -2.0127 10 8 5.1866 -2.3500 -2.0560 11 8 5.2975 -0.1177 -3.1746 12 7 6.7453 -0.6194 -1.2400 13 6 7.3215 -1.6127 -0.3303 14 6 7.4342 0.6536 -1.4661 15 6 7.0494 1.6316 -0.3860 16 1 6.3604 1.3348 0.3909 17 6 7.5764 2.9058 -0.3902 18 7 8.4150 3.2674 -1.3364 19 14 7.0989 4.1183 0.9482 20 1 7.4898 3.5727 2.2729 21 1 7.7973 5.4087 0.7192 22 1 5.6305 4.3373 0.9169 23 6 3.4078 1.3575 0.6397 24 6 3.7913 2.7434 1.1624 25 6 3.6551 0.2471 1.6629 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.2885 1.1426 -2.1891 30 1 2.7678 2.7513 -1.4938 31 1 3.4670 -1.0113 -0.6460 32 1 7.9806 -2.2776 -0.8887 33 1 7.8918 -1.1052 0.4478 34 1 6.5211 -2.1945 0.1268 35 1 8.5120 0.4925 -1.4432 36 1 7.1472 1.0544 -2.4382 37 1 8.7860 4.1636 -1.3391 38 1 3.3143 2.9122 2.1279 39 1 4.8737 2.8018 1.2766 40 1 3.4589 3.5032 0.4552 41 1 3.2305 -0.6870 1.2952 42 1 4.7277 0.1242 1.8134 43 1 3.1836 0.5132 2.6089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440380958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:50 Heat of formation + Delta-G solvation = -118.992272 kcal Electronic energy + Delta-G solvation = -26238.519270 eV Core-core repulsion = 22638.850744 eV Total energy + Delta-G solvation = -3599.668526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32238 -38.26820 -37.41325 -37.11144 -36.85413 -34.42191 -33.89021 -31.22451 -29.64989 -28.37822 -27.25902 -26.73207 -25.02965 -24.13427 -23.30544 -20.36827 -19.88153 -18.86840 -18.43776 -18.13834 -17.19531 -17.01023 -16.74566 -16.32304 -16.03948 -15.90342 -15.12033 -14.99737 -14.63648 -14.59185 -14.09380 -13.92669 -13.90681 -13.59907 -13.44100 -13.31771 -13.16649 -13.04177 -12.96090 -12.77629 -12.67599 -12.60540 -12.37892 -12.28219 -12.08677 -11.90344 -11.65300 -11.61784 -11.45573 -10.67592 -10.46116 -10.27392 -10.13280 -9.73342 -8.09587 -6.22099 -0.23568 1.50138 1.51922 1.58216 2.04292 2.49707 2.61878 2.82508 3.21703 3.47005 3.63834 3.68260 3.96968 4.10299 4.16073 4.37601 4.42642 4.52924 4.62428 4.66877 4.72948 4.79929 4.84139 4.86240 4.89771 4.93301 5.03055 5.08262 5.09999 5.20460 5.26990 5.32974 5.39621 5.52078 5.56135 5.65329 5.81691 5.92536 6.17572 6.36092 6.41890 6.89622 7.46681 8.98252 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.008624 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.146801 B = 3245.804860 C = 4722.826304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.383 6.383 3 C 0.085 3.915 4 H 0.094 0.906 5 C -0.179 4.179 6 C 0.119 3.881 7 H 0.107 0.893 8 N -1.087 6.087 9 S 2.802 3.198 10 O -1.013 7.013 11 O -1.017 7.017 12 N -1.001 6.001 13 C 0.100 3.900 14 C 0.254 3.746 15 C -0.533 4.533 16 H 0.085 0.915 17 C 0.015 3.985 18 N -0.931 5.931 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.305 1.305 22 H -0.216 1.216 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.124 4.124 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.420 0.580 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.377 -3.362 7.865 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.301 6.301 3 C 0.027 3.973 4 H 0.112 0.888 5 C -0.219 4.219 6 C 0.011 3.989 7 H 0.124 0.876 8 N -0.848 5.848 9 S 2.810 3.190 10 O -0.997 6.997 11 O -1.001 7.001 12 N -0.843 5.843 13 C -0.045 4.045 14 C 0.130 3.870 15 C -0.572 4.572 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.571 5.571 19 Si 0.756 3.244 20 H -0.198 1.198 21 H -0.232 1.232 22 H -0.139 1.139 23 C -0.084 4.084 24 C -0.194 4.194 25 C -0.182 4.182 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.257 0.743 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.128 -3.733 6.853 16.140 hybrid contribution 0.122 0.867 0.586 1.053 sum -14.005 -2.867 7.439 16.115 Atomic orbital electron populations 1.22962 0.79674 1.03648 1.00693 1.87769 1.21066 1.26803 1.94491 1.23136 0.93912 0.85277 0.94955 0.88791 1.23998 0.97447 1.01871 0.98575 1.22097 0.99909 0.80051 0.96836 0.87559 1.55315 1.46108 1.14507 1.68837 1.01059 0.72840 0.71530 0.73603 1.93513 1.87096 1.31443 1.87631 1.93526 1.86948 1.70955 1.48660 1.57485 1.39006 1.26607 1.61218 1.21424 0.99402 0.90269 0.93440 1.18848 0.92565 0.79134 0.96405 1.21837 1.27526 0.96559 1.11309 0.89734 1.25779 0.94754 1.00121 0.97767 1.70083 1.31905 1.20170 1.34957 0.86197 0.81551 0.77390 0.79262 1.19787 1.23228 1.13908 1.22357 0.94406 0.97257 0.94345 1.21922 1.02127 0.93633 1.01737 1.21469 1.01095 0.97894 0.97717 0.93792 0.88627 0.92714 0.91365 0.87673 0.74294 0.92832 0.90555 0.90640 0.96456 0.96464 0.92885 0.90120 0.92454 0.91724 0.91750 0.93423 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.86 113.37 1.23 1.66 16 2 O -0.38 -8.95 7.87 -148.98 -1.17 -10.12 16 3 C 0.09 2.03 3.78 31.12 0.12 2.15 16 4 H 0.09 1.79 7.85 -2.39 -0.02 1.77 16 5 C -0.18 -5.20 7.36 31.12 0.23 -4.98 16 6 C 0.12 4.07 3.31 45.52 0.15 4.22 16 7 H 0.11 4.41 5.02 -2.39 -0.01 4.40 16 8 N -1.09 -37.25 5.13 -167.19 -0.86 -38.11 16 9 S 2.80 115.32 6.06 -56.49 -0.34 114.97 16 10 O -1.01 -42.61 17.21 -128.00 -2.20 -44.82 16 11 O -1.02 -49.74 16.45 -128.00 -2.11 -51.85 16 12 N -1.00 -41.78 3.23 -543.21 -1.75 -43.54 16 13 C 0.10 3.41 10.31 127.77 1.32 4.73 16 14 C 0.25 12.72 5.34 85.63 0.46 13.17 16 15 C -0.53 -26.24 6.99 25.60 0.18 -26.06 16 16 H 0.08 3.84 6.51 -2.91 -0.02 3.83 16 17 C 0.02 0.78 5.46 84.66 0.46 1.24 16 18 N -0.93 -52.89 13.29 21.45 0.28 -52.61 16 19 Si 0.93 38.43 27.44 68.60 1.88 40.31 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.31 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.22 -7.58 5.18 99.48 0.52 -7.07 16 23 C -0.08 -2.24 1.34 -51.65 -0.07 -2.31 16 24 C -0.14 -3.67 8.23 71.98 0.59 -3.07 16 25 C -0.12 -3.21 8.46 71.98 0.61 -2.60 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 2.81 7.63 -2.39 -0.02 2.79 16 31 H 0.42 12.77 6.27 -96.75 -0.61 12.17 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 2.53 8.07 -2.39 -0.02 2.52 16 34 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 35 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.02 0.98 6.91 -2.39 -0.02 0.96 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.82 3.93 -2.39 -0.01 1.81 16 40 H 0.06 1.64 7.32 -2.39 -0.02 1.62 16 41 H 0.06 1.63 5.79 -2.39 -0.01 1.62 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -65.82 342.16 -0.77 -66.60 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.21 Total: 30.99 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.28 Total: -11.84 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -2.32 Total: -134.25 kcal Atomic # 8 Polarization: -101.30 SS G_CDS: -5.48 Total: -106.78 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.88 Total: 40.31 kcal Atomic # 16 Polarization: 115.32 SS G_CDS: -0.34 Total: 114.97 kcal Total: -65.82 -0.77 -66.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440380958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.396 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds