Wall clock time and date at job start Fri Apr 10 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48505 * 109.46708 * 269.99600 * 3 2 1 5 5 H 1.48501 * 109.47501 * 29.99398 * 3 2 1 6 6 H 1.48494 * 109.47399 * 149.99938 * 3 2 1 7 7 C 1.38950 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.37094 * 119.99768 * 180.02562 * 7 2 1 10 10 C 1.34785 * 119.99771 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99678 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00018 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46948 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99436 * 182.18475 * 13 12 10 15 15 C 1.52999 * 109.43823 * 54.21597 * 14 13 12 16 16 O 1.42896 * 109.47117 * 174.45319 * 15 14 13 17 17 C 1.53074 * 109.43611 * 294.34259 * 14 13 12 18 18 C 1.53409 * 108.29983 * 288.12946 * 17 14 13 19 19 O 1.42825 * 108.38014 * 295.29208 * 18 17 14 20 20 C 1.35848 * 117.85647 * 49.19711 * 19 18 17 21 21 C 1.39143 * 118.49216 * 163.02884 * 20 19 18 22 22 C 1.37973 * 120.21107 * 179.60831 * 21 20 19 23 23 C 1.38288 * 119.95817 * 359.97438 * 22 21 20 24 24 C 1.38106 * 119.98452 * 0.06665 * 23 22 21 25 25 C 1.38365 * 121.80488 * 342.75103 * 20 19 18 26 26 H 0.96998 * 119.99946 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00535 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46941 * 300.00007 * 12 10 9 29 29 H 1.09001 * 109.46973 * 59.99711 * 12 10 9 30 30 H 1.00894 * 110.99873 * 306.13322 * 13 12 10 31 31 H 1.09000 * 109.46637 * 294.44850 * 15 14 13 32 32 H 1.08993 * 109.47066 * 54.44977 * 15 14 13 33 33 H 0.96694 * 114.00177 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.69731 * 47.83143 * 17 14 13 35 35 H 1.08994 * 109.69645 * 168.42696 * 17 14 13 36 36 H 1.08999 * 109.68240 * 175.56784 * 18 17 14 37 37 H 1.09003 * 109.68273 * 55.01134 * 18 17 14 38 38 H 1.07999 * 119.89695 * 359.61066 * 21 20 19 39 39 H 1.07999 * 120.01541 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00822 * 180.02562 * 23 22 21 41 41 H 1.07992 * 119.84160 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4209 0.0001 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0004 14 6 7.5179 -3.7950 0.0527 15 6 8.0068 -2.9808 1.2523 16 8 9.4228 -3.1240 1.3799 17 6 8.0898 -3.1967 -1.2350 18 6 7.8366 -4.1860 -2.3797 19 8 8.5795 -5.3774 -2.1180 20 6 8.4723 -5.9339 -0.8834 21 6 8.8812 -7.2529 -0.7120 22 6 8.7955 -7.8507 0.5285 23 6 8.3024 -7.1379 1.6060 24 6 7.8949 -5.8289 1.4394 25 6 7.9765 -5.2242 0.1959 26 1 -0.4850 0.8400 0.0004 27 1 3.8649 -0.3633 0.0007 28 1 5.9241 -1.8567 -0.8890 29 1 5.9241 -1.8567 0.8910 30 1 5.6472 -4.2819 0.7610 31 1 7.7599 -1.9297 1.1028 32 1 7.5218 -3.3426 2.1589 33 1 9.8025 -2.6332 2.1215 34 1 7.5950 -2.2499 -1.4515 35 1 9.1614 -3.0340 -1.1202 36 1 8.1647 -3.7484 -3.3225 37 1 6.7735 -4.4208 -2.4337 38 1 9.2669 -7.8104 -1.5527 39 1 9.1133 -8.8748 0.6578 40 1 8.2353 -7.6050 2.5775 41 1 7.5098 -5.2746 2.2823 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440492645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:55 Heat of formation + Delta-G solvation = -78.644298 kcal Electronic energy + Delta-G solvation = -25643.181937 eV Core-core repulsion = 21909.819079 eV Total energy + Delta-G solvation = -3733.362858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08142 -38.68267 -37.64354 -37.43899 -35.63206 -34.03230 -31.94462 -31.62423 -30.73720 -30.10079 -27.69630 -26.57265 -24.27820 -24.13984 -22.84923 -21.69392 -19.54863 -19.17080 -18.58598 -17.91549 -17.68332 -16.67613 -16.44098 -15.72181 -15.28903 -15.17221 -15.01249 -14.65835 -14.60329 -14.04340 -13.91347 -13.71389 -13.62197 -13.26188 -12.87103 -12.64564 -12.38867 -12.31226 -12.14629 -11.91618 -11.72915 -11.57682 -11.22429 -11.04515 -10.73452 -10.65442 -10.38060 -10.10378 -10.02881 -9.63639 -8.92928 -8.69624 -8.30321 -8.23558 -8.11652 -6.36427 -3.88273 1.31412 1.47019 2.96471 3.01812 3.10444 3.34847 3.61341 3.68921 3.91706 4.04632 4.18430 4.34109 4.61030 4.67772 4.77163 4.87261 5.02675 5.10825 5.14058 5.20091 5.22943 5.30165 5.40405 5.47743 5.51210 5.55034 5.64087 5.68048 5.78691 5.90476 5.97561 6.02976 6.29281 6.45970 6.51763 6.78469 6.91130 7.34985 7.42527 7.49737 7.51775 8.08148 8.53101 8.88965 9.35906 9.74955 10.76570 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.003549 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.285000 B = 7888.414035 C = 8047.809018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.562 6.562 12 C 0.037 3.963 13 N -0.645 5.645 14 C 0.161 3.839 15 C 0.050 3.950 16 O -0.560 6.560 17 C -0.145 4.145 18 C 0.065 3.935 19 O -0.319 6.319 20 C 0.151 3.849 21 C -0.156 4.156 22 C -0.086 4.086 23 C -0.157 4.157 24 C -0.072 4.072 25 C -0.127 4.127 26 H 0.274 0.726 27 H 0.370 0.630 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.357 0.643 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.375 0.625 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.316 -5.857 1.921 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.234 3.766 11 O -0.444 6.444 12 C -0.095 4.095 13 N -0.279 5.279 14 C 0.070 3.930 15 C -0.030 4.030 16 O -0.363 6.363 17 C -0.182 4.182 18 C -0.010 4.010 19 O -0.233 6.233 20 C 0.105 3.895 21 C -0.175 4.175 22 C -0.105 4.105 23 C -0.175 4.175 24 C -0.091 4.091 25 C -0.128 4.128 26 H 0.085 0.915 27 H 0.203 0.797 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.178 0.822 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.221 0.779 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.658 -6.939 0.539 21.799 hybrid contribution 0.533 2.360 1.651 2.929 sum 21.191 -4.579 2.189 21.790 Atomic orbital electron populations 1.69619 1.05651 1.27564 1.49072 1.25043 0.95492 0.97978 0.97578 0.86673 0.79692 0.84056 0.78942 1.19535 1.20136 1.19608 1.19434 0.79159 0.96678 1.48226 0.86229 1.42190 1.07565 1.06070 1.66938 1.19610 0.87946 0.84664 0.84373 1.90586 1.69288 1.30869 1.53680 1.21899 0.95405 0.90659 1.01537 1.60505 1.02388 1.12146 1.52841 1.19674 0.88111 0.91288 0.93972 1.23029 0.82375 0.99432 0.98176 1.86545 1.20469 1.74753 1.54555 1.22317 1.02161 0.99605 0.94157 1.22981 0.97274 0.82896 0.97842 1.85936 1.66303 1.41921 1.29092 1.18614 0.95417 0.91625 0.83812 1.20545 1.05967 0.92414 0.98527 1.20870 0.98128 0.99462 0.92014 1.20923 1.02793 0.94763 0.99056 1.20823 0.97555 0.94838 0.95841 1.19310 1.05105 0.94859 0.93554 0.91543 0.79719 0.89053 0.93357 0.82208 0.92816 0.93353 0.77850 0.89652 0.89610 0.87912 0.89921 0.85463 0.85702 0.86140 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 18.89 27.74 -169.99 -4.71 14.18 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.31 -8.50 10.16 -14.93 -0.15 -8.66 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.57 5.09 -10.96 -0.06 -13.62 16 10 C 0.45 9.81 7.81 -10.98 -0.09 9.72 16 11 O -0.56 -14.77 15.73 5.55 0.09 -14.68 16 12 C 0.04 0.58 5.40 -4.97 -0.03 0.55 16 13 N -0.64 -9.81 5.39 -102.31 -0.55 -10.37 16 14 C 0.16 2.07 0.38 -132.68 -0.05 2.02 16 15 C 0.05 0.54 4.74 37.16 0.18 0.72 16 16 O -0.56 -5.80 12.42 -35.23 -0.44 -6.24 16 17 C -0.14 -1.73 4.94 -26.48 -0.13 -1.86 16 18 C 0.06 0.81 7.00 37.37 0.26 1.07 16 19 O -0.32 -4.51 10.27 -19.26 -0.20 -4.71 16 20 C 0.15 2.15 6.47 -39.20 -0.25 1.90 16 21 C -0.16 -1.95 9.94 -39.34 -0.39 -2.34 16 22 C -0.09 -0.95 10.04 -39.66 -0.40 -1.35 16 23 C -0.16 -1.77 10.04 -39.61 -0.40 -2.16 16 24 C -0.07 -0.90 8.81 -39.53 -0.35 -1.25 16 25 C -0.13 -1.74 4.46 -104.44 -0.47 -2.20 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.37 7.43 5.76 -40.82 -0.24 7.20 16 28 H 0.09 1.25 6.33 -51.93 -0.33 0.93 16 29 H 0.05 0.65 6.21 -51.93 -0.32 0.32 16 30 H 0.36 5.81 8.10 -39.29 -0.32 5.49 16 31 H 0.05 0.54 6.62 -51.93 -0.34 0.20 16 32 H 0.05 0.50 6.78 -51.93 -0.35 0.15 16 33 H 0.38 2.24 9.12 45.56 0.42 2.66 16 34 H 0.09 0.93 6.12 -51.93 -0.32 0.61 16 35 H 0.09 1.04 7.59 -51.93 -0.39 0.64 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.17 7.81 -51.93 -0.41 0.76 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.31 6.59 -52.49 -0.35 0.96 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -33.80 332.05 -6.65 -40.44 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -4.20 Total: 17.36 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.36 Total: -2.79 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.17 Total: -48.56 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.55 Total: -25.63 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.80 -6.65 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440492645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.201 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds