Wall clock time and date at job start Fri Apr 10 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48504 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47058 * 299.99877 * 3 2 1 6 6 H 1.48496 * 109.47243 * 60.00318 * 3 2 1 7 7 C 1.38953 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99443 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00394 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00240 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.46908 * 111.00061 * 177.08807 * 13 12 10 15 15 C 1.52996 * 109.43487 * 304.23134 * 14 13 12 16 16 O 1.42901 * 109.46967 * 185.35337 * 15 14 13 17 17 C 1.53074 * 109.43319 * 64.14384 * 14 13 12 18 18 C 1.53405 * 108.33513 * 71.87655 * 17 14 13 19 19 O 1.42912 * 108.32000 * 64.72236 * 18 17 14 20 20 C 1.35853 * 117.87458 * 310.84019 * 19 18 17 21 21 C 1.39142 * 118.48979 * 197.03008 * 20 19 18 22 22 C 1.37969 * 120.21016 * 180.24525 * 21 20 19 23 23 C 1.38291 * 119.96035 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.98234 * 359.92363 * 23 22 21 25 25 C 1.38365 * 121.80877 * 17.13438 * 20 19 18 26 26 H 0.96999 * 119.99962 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99999 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47645 * 59.99817 * 12 10 9 29 29 H 1.08999 * 109.47300 * 299.99294 * 12 10 9 30 30 H 1.00894 * 111.00495 * 301.04492 * 13 12 10 31 31 H 1.09000 * 109.46970 * 305.35066 * 15 14 13 32 32 H 1.08994 * 109.47333 * 65.35248 * 15 14 13 33 33 H 0.96706 * 114.00258 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.69595 * 191.60399 * 17 14 13 35 35 H 1.09009 * 109.69520 * 312.15844 * 17 14 13 36 36 H 1.09000 * 109.67926 * 184.47512 * 18 17 14 37 37 H 1.08997 * 109.68571 * 305.03856 * 18 17 14 38 38 H 1.08000 * 119.89847 * 0.27077 * 21 20 19 39 39 H 1.08006 * 120.02209 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00980 * 179.89960 * 23 22 21 41 41 H 1.08001 * 119.84171 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4995 -7.2698 0.0675 15 6 0.5901 -7.2909 1.2977 16 8 0.0057 -8.5876 1.4357 17 6 0.6538 -7.4591 -1.1943 18 6 1.5985 -7.7304 -2.3722 19 8 2.2649 -8.9725 -2.1367 20 6 2.8394 -9.1646 -0.9207 21 6 3.7811 -10.1798 -0.7845 22 6 4.3830 -10.4092 0.4356 23 6 4.0507 -9.6282 1.5274 24 6 3.1180 -8.6183 1.3952 25 6 2.5107 -8.3831 0.1728 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6174 -4.9206 -0.8913 29 1 0.6169 -4.9210 0.8887 30 1 2.8026 -5.9383 -0.8086 31 1 1.1767 -7.0603 2.1870 32 1 -0.1983 -6.5477 1.1796 33 1 -0.5841 -8.6742 2.1972 34 1 -0.0201 -8.3054 -1.0613 35 1 0.0753 -6.5557 -1.3879 36 1 1.0245 -7.7900 -3.2969 37 1 2.3327 -6.9282 -2.4462 38 1 4.0421 -10.7899 -1.6366 39 1 5.1133 -11.1984 0.5380 40 1 4.5201 -9.8081 2.4832 41 1 2.8604 -8.0094 2.2493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440492646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:57 Heat of formation + Delta-G solvation = -84.266858 kcal Electronic energy + Delta-G solvation = -25580.922685 eV Core-core repulsion = 21847.316015 eV Total energy + Delta-G solvation = -3733.606670 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11502 -38.48257 -37.51730 -37.42520 -35.59834 -33.95682 -31.76923 -31.19179 -30.71530 -29.99516 -27.61342 -26.57022 -24.38157 -24.12360 -22.85264 -21.68075 -19.50494 -18.97204 -18.08862 -17.86970 -17.63726 -16.61006 -16.32083 -15.86906 -15.53728 -14.92968 -14.60027 -14.55909 -14.40990 -14.07558 -13.89079 -13.64840 -13.60236 -13.43525 -13.06513 -12.51648 -12.30526 -12.16565 -12.07560 -11.57288 -11.52903 -11.31540 -11.10008 -11.07194 -10.90178 -10.37317 -10.28615 -10.22905 -9.98748 -9.56155 -8.78832 -8.57204 -8.23718 -8.05402 -8.00507 -6.46121 -3.86928 1.37779 1.51227 3.13458 3.24574 3.26486 3.31767 3.69710 3.84344 3.89767 4.13293 4.32068 4.50571 4.67326 4.74655 4.83310 5.05789 5.08140 5.12829 5.17395 5.25271 5.27128 5.36156 5.40589 5.50237 5.54745 5.62019 5.66612 5.81660 5.91709 5.96669 6.05722 6.18895 6.32466 6.53199 6.62081 6.81575 7.05484 7.42598 7.46278 7.51610 7.54565 8.01772 8.56275 9.13751 9.49027 10.00345 10.71599 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.003323 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.898135 B = 8423.209436 C = 8556.461171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.041 3.959 13 N -0.648 5.648 14 C 0.163 3.837 15 C 0.088 3.912 16 O -0.566 6.566 17 C -0.193 4.193 18 C 0.061 3.939 19 O -0.317 6.317 20 C 0.136 3.864 21 C -0.157 4.157 22 C -0.087 4.087 23 C -0.159 4.159 24 C -0.051 4.051 25 C -0.126 4.126 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.354 0.646 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.379 0.621 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -18.484 0.644 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.463 6.463 12 C -0.091 4.091 13 N -0.282 5.282 14 C 0.072 3.928 15 C 0.010 3.990 16 O -0.370 6.370 17 C -0.232 4.232 18 C -0.014 4.014 19 O -0.231 6.231 20 C 0.090 3.910 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.178 4.178 24 C -0.069 4.069 25 C -0.127 4.127 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.176 0.824 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.002 -18.496 0.612 18.506 hybrid contribution -1.088 1.272 -0.272 1.696 sum -1.086 -17.223 0.340 17.261 Atomic orbital electron populations 1.69617 1.05948 1.28102 1.50633 1.25263 0.95637 0.99741 0.97267 0.85800 0.79749 0.81086 0.77729 1.19184 1.20748 1.20714 1.19758 0.93421 0.82166 1.47506 0.87832 1.41856 1.09158 1.04578 1.64381 1.19720 0.88382 0.84556 0.84746 1.90543 1.13671 1.86968 1.55166 1.21857 0.94711 0.91132 1.01417 1.60235 1.19932 0.98559 1.49512 1.19562 0.90914 0.88597 0.93749 1.22129 0.95254 0.84453 0.97147 1.86471 1.65988 1.32045 1.52503 1.23011 0.99730 1.04487 0.95991 1.22980 0.94864 0.84721 0.98832 1.85977 1.68562 1.37699 1.30876 1.18716 0.92684 0.95519 0.84040 1.20490 0.98151 1.00107 0.98819 1.20868 0.98682 0.98899 0.92084 1.20991 1.00254 0.97562 0.98967 1.20849 0.94037 0.95666 0.96385 1.19334 1.00793 0.98907 0.93710 0.91900 0.77518 0.93411 0.89321 0.82406 0.92062 0.92926 0.77474 0.89059 0.89405 0.87324 0.91796 0.85598 0.85770 0.86120 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 10 C 0.44 10.13 7.83 -10.99 -0.09 10.04 16 11 O -0.58 -15.56 15.84 5.55 0.09 -15.47 16 12 C 0.04 0.69 5.40 -4.98 -0.03 0.66 16 13 N -0.65 -10.44 5.64 -102.32 -0.58 -11.02 16 14 C 0.16 2.21 0.41 -132.68 -0.05 2.15 16 15 C 0.09 1.05 4.81 37.16 0.18 1.23 16 16 O -0.57 -6.22 12.43 -35.23 -0.44 -6.65 16 17 C -0.19 -2.36 4.91 -26.48 -0.13 -2.49 16 18 C 0.06 0.74 6.98 37.37 0.26 1.00 16 19 O -0.32 -4.44 10.27 -19.28 -0.20 -4.64 16 20 C 0.14 1.95 6.47 -39.20 -0.25 1.70 16 21 C -0.16 -1.99 9.94 -39.34 -0.39 -2.39 16 22 C -0.09 -0.99 10.04 -39.66 -0.40 -1.38 16 23 C -0.16 -1.90 10.04 -39.61 -0.40 -2.30 16 24 C -0.05 -0.69 9.01 -39.53 -0.36 -1.04 16 25 C -0.13 -1.80 4.51 -104.44 -0.47 -2.27 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 28 H 0.05 0.71 6.32 -51.93 -0.33 0.39 16 29 H 0.09 1.35 6.18 -51.93 -0.32 1.03 16 30 H 0.35 6.09 7.04 -39.30 -0.28 5.82 16 31 H 0.06 0.74 6.77 -51.93 -0.35 0.39 16 32 H 0.05 0.59 6.60 -51.93 -0.34 0.24 16 33 H 0.38 2.44 9.12 45.56 0.42 2.86 16 34 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 35 H 0.09 1.00 6.07 -51.92 -0.32 0.69 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.80 6.73 -51.93 -0.35 0.45 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.59 6.59 -52.49 -0.35 1.25 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -32.70 333.60 -6.95 -39.66 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -4.13 Total: 17.62 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.37 Total: -2.95 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.09 Total: -48.39 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.55 Total: -26.76 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.70 -6.95 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440492646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.612 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds