Wall clock time and date at job start Fri Apr 10 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99836 * 2 1 4 4 H 1.48504 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47058 * 299.99877 * 3 2 1 6 6 H 1.48496 * 109.47243 * 60.00318 * 3 2 1 7 7 C 1.38953 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99443 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00394 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00240 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.46908 * 111.00061 * 177.08807 * 13 12 10 15 15 C 1.52996 * 109.43487 * 304.23134 * 14 13 12 16 16 O 1.42901 * 109.46967 * 185.35337 * 15 14 13 17 17 C 1.53074 * 109.43319 * 64.14384 * 14 13 12 18 18 C 1.53405 * 108.33513 * 71.87655 * 17 14 13 19 19 O 1.42912 * 108.32000 * 64.72236 * 18 17 14 20 20 C 1.35853 * 117.87458 * 310.84019 * 19 18 17 21 21 C 1.39142 * 118.48979 * 197.03008 * 20 19 18 22 22 C 1.37969 * 120.21016 * 180.24525 * 21 20 19 23 23 C 1.38291 * 119.96035 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.98234 * 359.92363 * 23 22 21 25 25 C 1.38365 * 121.80877 * 17.13438 * 20 19 18 26 26 H 0.96999 * 119.99962 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99999 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47645 * 59.99817 * 12 10 9 29 29 H 1.08999 * 109.47300 * 299.99294 * 12 10 9 30 30 H 1.00894 * 111.00495 * 301.04492 * 13 12 10 31 31 H 1.09000 * 109.46970 * 305.35066 * 15 14 13 32 32 H 1.08994 * 109.47333 * 65.35248 * 15 14 13 33 33 H 0.96706 * 114.00258 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.69595 * 191.60399 * 17 14 13 35 35 H 1.09009 * 109.69520 * 312.15844 * 17 14 13 36 36 H 1.09000 * 109.67926 * 184.47512 * 18 17 14 37 37 H 1.08997 * 109.68571 * 305.03856 * 18 17 14 38 38 H 1.08000 * 119.89847 * 0.27077 * 21 20 19 39 39 H 1.08006 * 120.02209 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00980 * 179.89960 * 23 22 21 41 41 H 1.08001 * 119.84171 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2438 -4.8630 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4995 -7.2698 0.0675 15 6 0.5901 -7.2909 1.2977 16 8 0.0057 -8.5876 1.4357 17 6 0.6538 -7.4591 -1.1943 18 6 1.5985 -7.7304 -2.3722 19 8 2.2649 -8.9725 -2.1367 20 6 2.8394 -9.1646 -0.9207 21 6 3.7811 -10.1798 -0.7845 22 6 4.3830 -10.4092 0.4356 23 6 4.0507 -9.6282 1.5274 24 6 3.1180 -8.6183 1.3952 25 6 2.5107 -8.3831 0.1728 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3907 -0.0005 28 1 0.6174 -4.9206 -0.8913 29 1 0.6169 -4.9210 0.8887 30 1 2.8026 -5.9383 -0.8086 31 1 1.1767 -7.0603 2.1870 32 1 -0.1983 -6.5477 1.1796 33 1 -0.5841 -8.6742 2.1972 34 1 -0.0201 -8.3054 -1.0613 35 1 0.0753 -6.5557 -1.3879 36 1 1.0245 -7.7900 -3.2969 37 1 2.3327 -6.9282 -2.4462 38 1 4.0421 -10.7899 -1.6366 39 1 5.1133 -11.1984 0.5380 40 1 4.5201 -9.8081 2.4832 41 1 2.8604 -8.0094 2.2493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440492646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:56 Heat of formation + Delta-G solvation = -110.533418 kcal Electronic energy + Delta-G solvation = -25582.061689 eV Core-core repulsion = 21847.316015 eV Total energy + Delta-G solvation = -3734.745674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11980 -40.15948 -38.63497 -38.41515 -36.66258 -35.90791 -33.34941 -32.79379 -31.65670 -30.98889 -28.71133 -28.02051 -26.09245 -25.07202 -23.93447 -22.66391 -21.18229 -20.12769 -19.87225 -18.93755 -18.74504 -17.71172 -17.46649 -17.13775 -16.90008 -16.39211 -15.98420 -15.86811 -15.50997 -15.47603 -15.19833 -14.84849 -14.71485 -14.54906 -14.14778 -13.95548 -13.52692 -13.49778 -13.31146 -13.13803 -12.91997 -12.47204 -12.41168 -12.35398 -12.12772 -12.04890 -11.86432 -11.52449 -11.21684 -10.87554 -10.38709 -10.02257 -9.75694 -9.48190 -9.09164 -8.47738 -5.96111 0.41453 0.53216 1.35944 1.42028 1.55679 2.03044 2.27415 2.32432 2.62717 2.94874 3.18944 3.19263 3.40308 3.59884 3.72368 3.83530 3.90479 4.12098 4.21497 4.23792 4.26648 4.32528 4.41225 4.49387 4.51363 4.55853 4.60492 4.63620 4.76499 4.94688 4.96501 5.11825 5.37909 5.40861 5.57386 5.65391 5.80810 5.90115 6.04164 6.16739 6.47297 6.59009 6.88747 7.12130 7.54859 8.10494 8.69673 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.003323 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.898135 B = 8423.209436 C = 8556.461171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.057 3.943 13 N -0.659 5.659 14 C 0.162 3.838 15 C 0.092 3.908 16 O -0.575 6.575 17 C -0.185 4.185 18 C 0.057 3.943 19 O -0.328 6.328 20 C 0.112 3.888 21 C -0.168 4.168 22 C -0.084 4.084 23 C -0.163 4.163 24 C -0.068 4.068 25 C -0.143 4.143 26 H 0.278 0.722 27 H 0.397 0.603 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.345 0.655 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.054 0.946 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -19.209 0.869 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.208 5.208 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.074 4.074 13 N -0.293 5.293 14 C 0.071 3.929 15 C 0.014 3.986 16 O -0.383 6.383 17 C -0.225 4.225 18 C -0.018 4.018 19 O -0.242 6.242 20 C 0.067 3.933 21 C -0.186 4.186 22 C -0.102 4.102 23 C -0.181 4.181 24 C -0.087 4.087 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.231 0.769 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.165 0.835 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.248 0.752 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.151 0.849 37 H 0.072 0.928 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.619 -19.241 0.855 19.270 hybrid contribution -0.877 1.394 -0.317 1.677 sum -1.496 -17.847 0.538 17.918 Atomic orbital electron populations 1.69667 1.06740 1.29237 1.50317 1.25994 0.96521 1.02272 0.96263 0.84902 0.78035 0.77262 0.78342 1.19927 1.19600 1.19596 1.19682 0.92668 0.84019 1.49873 0.90440 1.41896 1.09319 1.04590 1.65001 1.20765 0.88190 0.86012 0.82381 1.90512 1.15925 1.87905 1.56521 1.21708 0.94220 0.87941 1.03573 1.60208 1.20257 0.99520 1.49267 1.19628 0.91145 0.86940 0.95170 1.22018 0.95212 0.85183 0.96174 1.86431 1.66521 1.31445 1.53859 1.22942 0.99414 1.04750 0.95353 1.23143 0.94754 0.84004 0.99922 1.85958 1.68869 1.38429 1.30937 1.19034 0.93620 0.96465 0.84230 1.20829 0.97889 0.99920 0.99993 1.21258 0.98554 0.99154 0.91228 1.21335 0.99590 0.96856 1.00274 1.21024 0.94868 0.96516 0.96267 1.19482 1.01466 0.99349 0.94094 0.91284 0.76904 0.90882 0.87173 0.83462 0.92550 0.91919 0.75220 0.89215 0.88459 0.84906 0.92782 0.84287 0.82611 0.83832 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.05 21.66 0.28 -48.28 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.46 29.55 68.60 2.03 44.48 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -28.53 5.29 -306.99 -1.62 -30.15 16 10 C 0.44 20.38 7.83 87.66 0.69 21.07 16 11 O -0.62 -34.31 15.84 -3.07 -0.05 -34.35 16 12 C 0.06 1.87 5.40 85.56 0.46 2.33 16 13 N -0.66 -21.02 5.64 -477.64 -2.69 -23.71 16 14 C 0.16 4.24 0.41 2.83 0.00 4.24 16 15 C 0.09 2.08 4.81 71.98 0.35 2.42 16 16 O -0.58 -11.71 12.43 -148.98 -1.85 -13.56 16 17 C -0.19 -4.29 4.91 30.75 0.15 -4.14 16 18 C 0.06 1.32 6.98 72.12 0.50 1.82 16 19 O -0.33 -9.01 10.27 -91.90 -0.94 -9.95 16 20 C 0.11 3.16 6.47 22.52 0.15 3.30 16 21 C -0.17 -4.07 9.94 22.42 0.22 -3.85 16 22 C -0.08 -1.74 10.04 22.22 0.22 -1.51 16 23 C -0.16 -3.61 10.04 22.25 0.22 -3.38 16 24 C -0.07 -1.80 9.01 22.30 0.20 -1.60 16 25 C -0.14 -4.01 4.51 -19.75 -0.09 -4.10 16 26 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.40 18.66 7.90 -92.71 -0.73 17.92 16 28 H 0.07 2.04 6.32 -2.39 -0.02 2.03 16 29 H 0.11 3.15 6.18 -2.39 -0.01 3.14 16 30 H 0.34 12.03 7.04 -89.70 -0.63 11.40 16 31 H 0.06 1.31 6.77 -2.39 -0.02 1.29 16 32 H 0.06 1.26 6.60 -2.39 -0.02 1.24 16 33 H 0.40 4.38 9.12 -74.05 -0.68 3.70 16 34 H 0.09 2.13 7.58 -2.39 -0.02 2.11 16 35 H 0.10 2.02 6.07 -2.38 -0.01 2.01 16 36 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.36 6.73 -2.39 -0.02 1.34 16 38 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.12 3.13 6.59 -2.91 -0.02 3.11 16 Total: -1.00 -70.88 333.60 -1.42 -72.30 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -0.93 Total: 44.55 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.36 Total: -1.31 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.03 Total: -102.15 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -2.84 Total: -57.87 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.88 -1.42 -72.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440492646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.232 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds