Wall clock time and date at job start Fri Apr 10 2020 17:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46913 * 2 1 4 4 N 1.46505 * 115.55015 * 303.58244 * 3 2 1 5 5 S 1.65599 * 119.99969 * 203.62821 * 4 3 2 6 6 O 1.42097 * 106.39848 * 190.51025 * 5 4 3 7 7 O 1.42098 * 106.40409 * 323.42793 * 5 4 3 8 8 N 1.65599 * 107.21888 * 76.97361 * 5 4 3 9 9 C 1.46502 * 119.99690 * 259.71696 * 8 5 4 10 10 C 1.50695 * 109.47460 * 109.41582 * 9 8 5 11 11 H 1.08002 * 119.99987 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00302 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99763 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00276 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46982 * 60.00058 * 14 12 10 16 16 H 1.48500 * 109.47051 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46840 * 299.99685 * 14 12 10 18 18 C 1.46499 * 120.00202 * 79.70846 * 8 5 4 19 19 C 1.53008 * 109.46725 * 95.00209 * 18 8 5 20 20 O 1.42899 * 109.46873 * 65.00373 * 19 18 8 21 21 C 1.42897 * 113.99643 * 179.97438 * 20 19 18 22 22 C 1.52997 * 117.50151 * 89.26010 * 3 2 1 23 23 C 1.53003 * 117.50029 * 157.92000 * 3 2 1 24 24 H 1.08997 * 109.47267 * 305.52122 * 1 2 3 25 25 H 1.09003 * 109.47015 * 65.52749 * 1 2 3 26 26 H 1.09005 * 109.46664 * 185.52243 * 1 2 3 27 27 H 1.09000 * 109.47189 * 239.99620 * 2 1 3 28 28 H 1.09000 * 109.46805 * 120.00091 * 2 1 3 29 29 H 0.97006 * 119.99746 * 23.63242 * 4 3 2 30 30 H 1.09008 * 109.46733 * 229.41618 * 9 8 5 31 31 H 1.08995 * 109.47184 * 349.41278 * 9 8 5 32 32 H 0.97004 * 119.99626 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47271 * 214.99860 * 18 8 5 34 34 H 1.09003 * 109.47394 * 335.00621 * 18 8 5 35 35 H 1.08994 * 109.46740 * 184.99831 * 19 18 8 36 36 H 1.08997 * 109.46930 * 304.99788 * 19 18 8 37 37 H 1.09001 * 109.47192 * 60.00283 * 21 20 19 38 38 H 1.09005 * 109.46829 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47347 * 299.99515 * 21 20 19 40 40 H 1.09001 * 117.50063 * 215.00227 * 22 3 2 41 41 H 1.09002 * 117.49924 * 0.02562 * 22 3 2 42 42 H 1.09007 * 117.49294 * 359.97123 * 23 3 2 43 43 H 1.08997 * 117.50135 * 144.96964 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5613 2.2819 -1.1012 5 16 2.4328 3.6099 -1.5693 6 8 1.6044 4.3379 -2.4654 7 8 2.9764 4.1719 -0.3828 8 7 3.7180 3.0638 -2.4596 9 6 5.0420 2.9526 -1.8424 10 6 5.3948 1.4978 -1.6689 11 1 4.7019 0.7326 -1.9862 12 6 6.6021 1.1437 -1.1052 13 7 7.4462 2.0756 -0.7193 14 14 7.0398 -0.6596 -0.8908 15 1 7.0540 -1.3266 -2.2174 16 1 8.3818 -0.7723 -0.2651 17 1 6.0312 -1.3134 -0.0187 18 6 3.5309 2.6919 -3.8642 19 6 3.8859 3.8816 -4.7584 20 8 5.2779 4.1770 -4.6277 21 6 5.7158 5.2781 -5.4264 22 6 2.2589 2.1144 1.3570 23 6 3.4612 1.6894 0.5102 24 1 -0.3633 0.5971 0.8364 25 1 -0.3633 0.4257 -0.9354 26 1 -0.3633 -1.0230 0.0989 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.7337 2.0598 -1.5560 30 1 5.7826 3.4323 -2.4825 31 1 5.0314 3.4425 -0.8688 32 1 8.2958 1.8264 -0.3229 33 1 4.1787 1.8494 -4.1063 34 1 2.4910 2.4102 -4.0301 35 1 3.6626 3.6352 -5.7964 36 1 3.3002 4.7501 -4.4570 37 1 5.1682 6.1757 -5.1393 38 1 6.7827 5.4383 -5.2706 39 1 5.5306 5.0603 -6.4783 40 1 2.0467 3.1810 1.4305 41 1 2.0401 1.5287 2.2498 42 1 4.0326 0.8241 0.8462 43 1 4.0400 2.4761 0.0263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451685929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:09 Heat of formation + Delta-G solvation = -88.896755 kcal Electronic energy + Delta-G solvation = -25868.096035 eV Core-core repulsion = 22269.732549 eV Total energy + Delta-G solvation = -3598.363486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.37784 -37.67798 -36.50802 -35.37512 -35.20909 -32.52594 -31.68208 -31.51461 -29.45939 -26.74261 -25.63885 -23.80323 -22.85557 -21.86291 -21.44034 -20.05945 -18.49266 -17.33034 -17.08388 -16.36216 -15.91834 -15.63924 -15.54654 -14.80041 -14.48973 -14.39614 -14.03007 -13.79136 -13.55762 -13.41271 -12.58638 -12.38094 -12.28610 -12.00815 -11.90620 -11.77563 -11.76466 -11.43617 -11.35936 -11.14482 -11.06434 -10.84644 -10.80888 -10.67528 -10.65466 -10.53690 -10.05308 -9.87164 -9.65777 -9.54206 -9.20138 -8.47608 -8.39269 -7.94702 -6.00101 -4.02936 1.25539 3.30257 3.36664 3.36986 3.49466 4.10886 4.23193 4.42726 4.44853 4.97307 5.00889 5.12535 5.29844 5.34130 5.41164 5.48323 5.50690 5.59323 5.68045 5.70280 5.75230 5.80428 5.84032 5.99025 6.01518 6.04562 6.21406 6.34893 6.35911 6.43016 6.57179 6.66057 6.91808 7.09956 7.33569 7.56725 7.61914 7.63837 7.79143 7.98306 8.28603 8.98990 9.59261 11.08194 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.008946 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.012941 B = 3129.067266 C = 4965.120068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C 0.109 3.891 4 N -1.095 6.095 5 S 2.779 3.221 6 O -1.003 7.003 7 O -0.974 6.974 8 N -0.984 5.984 9 C 0.240 3.760 10 C -0.522 4.522 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.138 3.862 19 C 0.042 3.958 20 O -0.366 6.366 21 C 0.031 3.969 22 C -0.204 4.204 23 C -0.166 4.166 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.406 0.594 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 -1.231 -3.675 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C 0.019 3.981 4 N -0.850 5.850 5 S 2.787 3.213 6 O -0.987 6.987 7 O -0.958 6.958 8 N -0.825 5.825 9 C 0.118 3.882 10 C -0.562 4.562 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.202 1.202 18 C 0.011 3.989 19 C -0.037 4.037 20 O -0.284 6.284 21 C -0.067 4.067 22 C -0.243 4.243 23 C -0.204 4.204 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.239 0.761 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.086 -0.335 -3.168 10.577 hybrid contribution -0.082 -1.376 -0.406 1.437 sum -10.168 -1.711 -3.574 10.913 Atomic orbital electron populations 1.21726 0.95946 1.01192 1.01773 1.21112 0.95400 0.92832 1.02928 1.20236 1.00499 0.90756 0.86631 1.55539 1.36810 1.47346 1.45310 1.02002 0.72549 0.73421 0.73288 1.93539 1.69122 1.69798 1.66250 1.93578 1.78620 1.76704 1.46888 1.57633 1.24441 1.81874 1.18590 1.19421 0.77195 0.97488 0.94073 1.21360 1.02279 0.92106 1.40449 0.92148 1.24870 0.96254 0.96907 0.95698 1.69930 1.09236 1.32270 1.41308 0.86743 0.77583 0.85841 0.78267 1.20448 1.21469 1.20246 1.21021 1.00259 0.96891 0.80744 1.23117 0.83223 0.98924 0.98387 1.88128 1.23897 1.50148 1.66241 1.22699 1.00563 0.89456 0.93936 1.23729 1.04969 1.01724 0.93893 1.24218 0.89501 1.05494 1.01142 0.92514 0.93006 0.92871 0.90977 0.90746 0.76121 0.92848 0.92870 0.92758 0.88728 0.90956 0.93362 0.93083 0.94689 0.89877 0.94861 0.87939 0.89470 0.88155 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.66 37.16 0.36 -1.27 16 2 C -0.08 -1.13 6.01 -26.73 -0.16 -1.29 16 3 C 0.11 1.80 2.76 -131.82 -0.36 1.43 16 4 N -1.10 -17.72 6.03 0.54 0.00 -17.72 16 5 S 2.78 54.23 5.67 -107.50 -0.61 53.62 16 6 O -1.00 -20.25 17.20 -57.17 -0.98 -21.23 16 7 O -0.97 -21.83 12.35 -57.17 -0.71 -22.53 16 8 N -0.98 -19.95 2.88 -115.66 -0.33 -20.28 16 9 C 0.24 5.83 4.56 -5.19 -0.02 5.81 16 10 C -0.52 -13.07 6.50 -34.44 -0.22 -13.29 16 11 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 12 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 14 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.14 2.39 5.70 -4.04 -0.02 2.37 16 19 C 0.04 0.70 6.28 37.16 0.23 0.93 16 20 O -0.37 -6.87 9.00 -35.23 -0.32 -7.19 16 21 C 0.03 0.44 11.01 101.05 1.11 1.55 16 22 C -0.20 -3.51 9.55 -26.70 -0.25 -3.76 16 23 C -0.17 -3.31 7.55 -26.69 -0.20 -3.51 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.53 7.09 -51.93 -0.37 0.16 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 29 H 0.41 5.42 7.63 -34.47 -0.26 5.16 16 30 H 0.05 1.42 6.59 -51.92 -0.34 1.08 16 31 H 0.05 1.42 5.37 -51.93 -0.28 1.15 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 34 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 1.90 6.83 -51.93 -0.35 1.54 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 43 H 0.14 3.29 1.99 -51.93 -0.10 3.18 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -30.88 348.77 -8.32 -39.20 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.70 Total: 9.17 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 0.36 Total: -9.41 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.41 Total: -62.25 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -2.01 Total: -50.95 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 54.23 SS G_CDS: -0.61 Total: 53.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.88 -8.32 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451685929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.698 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds