Wall clock time and date at job start Fri Apr 10 2020 17:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46913 * 2 1 4 4 N 1.46505 * 115.55015 * 303.58244 * 3 2 1 5 5 S 1.65599 * 119.99969 * 203.62821 * 4 3 2 6 6 O 1.42097 * 106.39848 * 190.51025 * 5 4 3 7 7 O 1.42098 * 106.40409 * 323.42793 * 5 4 3 8 8 N 1.65599 * 107.21888 * 76.97361 * 5 4 3 9 9 C 1.46502 * 119.99690 * 259.71696 * 8 5 4 10 10 C 1.50695 * 109.47460 * 109.41582 * 9 8 5 11 11 H 1.08002 * 119.99987 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00302 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99763 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00276 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46982 * 60.00058 * 14 12 10 16 16 H 1.48500 * 109.47051 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46840 * 299.99685 * 14 12 10 18 18 C 1.46499 * 120.00202 * 79.70846 * 8 5 4 19 19 C 1.53008 * 109.46725 * 95.00209 * 18 8 5 20 20 O 1.42899 * 109.46873 * 65.00373 * 19 18 8 21 21 C 1.42897 * 113.99643 * 179.97438 * 20 19 18 22 22 C 1.52997 * 117.50151 * 89.26010 * 3 2 1 23 23 C 1.53003 * 117.50029 * 157.92000 * 3 2 1 24 24 H 1.08997 * 109.47267 * 305.52122 * 1 2 3 25 25 H 1.09003 * 109.47015 * 65.52749 * 1 2 3 26 26 H 1.09005 * 109.46664 * 185.52243 * 1 2 3 27 27 H 1.09000 * 109.47189 * 239.99620 * 2 1 3 28 28 H 1.09000 * 109.46805 * 120.00091 * 2 1 3 29 29 H 0.97006 * 119.99746 * 23.63242 * 4 3 2 30 30 H 1.09008 * 109.46733 * 229.41618 * 9 8 5 31 31 H 1.08995 * 109.47184 * 349.41278 * 9 8 5 32 32 H 0.97004 * 119.99626 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.47271 * 214.99860 * 18 8 5 34 34 H 1.09003 * 109.47394 * 335.00621 * 18 8 5 35 35 H 1.08994 * 109.46740 * 184.99831 * 19 18 8 36 36 H 1.08997 * 109.46930 * 304.99788 * 19 18 8 37 37 H 1.09001 * 109.47192 * 60.00283 * 21 20 19 38 38 H 1.09005 * 109.46829 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47347 * 299.99515 * 21 20 19 40 40 H 1.09001 * 117.50063 * 215.00227 * 22 3 2 41 41 H 1.09002 * 117.49924 * 0.02562 * 22 3 2 42 42 H 1.09007 * 117.49294 * 359.97123 * 23 3 2 43 43 H 1.08997 * 117.50135 * 144.96964 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5613 2.2819 -1.1012 5 16 2.4328 3.6099 -1.5693 6 8 1.6044 4.3379 -2.4654 7 8 2.9764 4.1719 -0.3828 8 7 3.7180 3.0638 -2.4596 9 6 5.0420 2.9526 -1.8424 10 6 5.3948 1.4978 -1.6689 11 1 4.7019 0.7326 -1.9862 12 6 6.6021 1.1437 -1.1052 13 7 7.4462 2.0756 -0.7193 14 14 7.0398 -0.6596 -0.8908 15 1 7.0540 -1.3266 -2.2174 16 1 8.3818 -0.7723 -0.2651 17 1 6.0312 -1.3134 -0.0187 18 6 3.5309 2.6919 -3.8642 19 6 3.8859 3.8816 -4.7584 20 8 5.2779 4.1770 -4.6277 21 6 5.7158 5.2781 -5.4264 22 6 2.2589 2.1144 1.3570 23 6 3.4612 1.6894 0.5102 24 1 -0.3633 0.5971 0.8364 25 1 -0.3633 0.4257 -0.9354 26 1 -0.3633 -1.0230 0.0989 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.7337 2.0598 -1.5560 30 1 5.7826 3.4323 -2.4825 31 1 5.0314 3.4425 -0.8688 32 1 8.2958 1.8264 -0.3229 33 1 4.1787 1.8494 -4.1063 34 1 2.4910 2.4102 -4.0301 35 1 3.6626 3.6352 -5.7964 36 1 3.3002 4.7501 -4.4570 37 1 5.1682 6.1757 -5.1393 38 1 6.7827 5.4383 -5.2706 39 1 5.5306 5.0603 -6.4783 40 1 2.0467 3.1810 1.4305 41 1 2.0401 1.5287 2.2498 42 1 4.0326 0.8241 0.8462 43 1 4.0400 2.4761 0.0263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451685929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:08 Heat of formation + Delta-G solvation = -111.585248 kcal Electronic energy + Delta-G solvation = -25869.079882 eV Core-core repulsion = 22269.732549 eV Total energy + Delta-G solvation = -3599.347333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78315 -39.04761 -38.09799 -36.98872 -36.85904 -34.44499 -32.95744 -32.71792 -31.00284 -28.45063 -26.99482 -24.84782 -24.58905 -23.39412 -22.94611 -21.39656 -20.00485 -18.86600 -18.62283 -18.30570 -17.40218 -17.04704 -16.93605 -16.36933 -16.08692 -15.81894 -15.21231 -15.10303 -14.90705 -14.88313 -14.36371 -13.88472 -13.51603 -13.45937 -13.40119 -13.30010 -13.19023 -12.94045 -12.80380 -12.69442 -12.51456 -12.44164 -12.30292 -12.13353 -11.99034 -11.80487 -11.76337 -11.63231 -11.37367 -10.94570 -10.52807 -10.40105 -9.88368 -9.64282 -8.01923 -6.09998 -0.32093 1.48584 1.49349 1.56162 1.98266 2.51340 2.56640 3.01080 3.03741 3.31532 3.42075 3.71907 3.86863 4.00277 4.18896 4.23152 4.30337 4.40284 4.51153 4.56081 4.59104 4.60305 4.70343 4.84910 4.89592 4.94886 4.95694 5.10655 5.14386 5.19015 5.36740 5.41883 5.42234 5.51976 5.66927 5.71782 5.85049 5.98795 6.25914 6.28396 6.42535 6.98162 7.55592 9.06777 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010135 B = 0.008946 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.012941 B = 3129.067266 C = 4965.120068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C 0.126 3.874 4 N -1.081 6.081 5 S 2.791 3.209 6 O -1.008 7.008 7 O -1.006 7.006 8 N -0.988 5.988 9 C 0.261 3.739 10 C -0.508 4.508 11 H 0.069 0.931 12 C 0.014 3.986 13 N -0.931 5.931 14 Si 0.947 3.053 15 H -0.272 1.272 16 H -0.296 1.296 17 H -0.262 1.262 18 C 0.127 3.873 19 C 0.040 3.960 20 O -0.406 6.406 21 C 0.025 3.975 22 C -0.196 4.196 23 C -0.202 4.202 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.424 0.576 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -3.267 -4.509 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C 0.036 3.964 4 N -0.840 5.840 5 S 2.800 3.200 6 O -0.992 6.992 7 O -0.990 6.990 8 N -0.829 5.829 9 C 0.138 3.862 10 C -0.547 4.547 11 H 0.087 0.913 12 C -0.185 4.185 13 N -0.572 5.572 14 Si 0.773 3.227 15 H -0.197 1.197 16 H -0.222 1.222 17 H -0.187 1.187 18 C 0.001 3.999 19 C -0.039 4.039 20 O -0.325 6.325 21 C -0.072 4.072 22 C -0.235 4.235 23 C -0.241 4.241 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.260 0.740 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.112 0.888 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.426 -2.372 -4.043 13.280 hybrid contribution 0.588 -0.670 -0.176 0.909 sum -11.838 -3.041 -4.220 12.930 Atomic orbital electron populations 1.21720 0.93631 1.02688 1.02295 1.21194 0.97353 0.90083 1.03510 1.20458 0.97588 0.92414 0.85894 1.55178 1.37079 1.46503 1.45270 1.01468 0.72283 0.73682 0.72557 1.93525 1.68980 1.70352 1.66348 1.93544 1.79318 1.77794 1.48365 1.57514 1.23070 1.82234 1.20063 1.18860 0.78483 0.96691 0.92159 1.21535 1.01913 0.92430 1.38849 0.91276 1.25627 0.96409 1.00691 0.95747 1.70083 1.09702 1.34380 1.43004 0.85779 0.77141 0.81247 0.78512 1.19723 1.22203 1.18685 1.21348 1.02234 0.97144 0.79144 1.23206 0.82278 0.98182 1.00197 1.88077 1.25091 1.51619 1.67708 1.22872 1.00668 0.88628 0.94986 1.23751 1.02909 1.01368 0.95483 1.24033 0.91054 1.04857 1.04115 0.92367 0.92254 0.90868 0.90820 0.89853 0.74011 0.95902 0.95899 0.93144 0.89472 0.87457 0.89732 0.93937 0.94161 0.89825 0.92152 0.89598 0.86570 0.88809 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.66 71.98 0.70 -1.91 16 2 C -0.08 -1.95 6.01 30.59 0.18 -1.77 16 3 C 0.13 3.95 2.76 3.60 0.01 3.96 16 4 N -1.08 -32.99 6.03 -152.21 -0.92 -33.91 16 5 S 2.79 108.22 5.67 -56.49 -0.32 107.90 16 6 O -1.01 -39.52 17.20 -128.00 -2.20 -41.72 16 7 O -1.01 -46.44 12.35 -128.00 -1.58 -48.02 16 8 N -0.99 -40.28 2.88 -519.82 -1.50 -41.78 16 9 C 0.26 13.19 4.56 85.63 0.39 13.58 16 10 C -0.51 -25.75 6.50 25.60 0.17 -25.58 16 11 H 0.07 3.32 7.81 -2.91 -0.02 3.29 16 12 C 0.01 0.73 5.46 84.65 0.46 1.20 16 13 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 14 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 18 C 0.13 4.26 5.70 86.38 0.49 4.76 16 19 C 0.04 1.27 6.28 71.98 0.45 1.72 16 20 O -0.41 -15.31 9.00 -148.98 -1.34 -16.66 16 21 C 0.02 0.70 11.01 113.37 1.25 1.95 16 22 C -0.20 -6.55 9.55 30.62 0.29 -6.25 16 23 C -0.20 -8.09 7.55 30.62 0.23 -7.86 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 0.97 7.09 -2.39 -0.02 0.95 16 26 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.42 10.01 7.63 -96.74 -0.74 9.27 16 30 H 0.02 1.29 6.59 -2.38 -0.02 1.28 16 31 H 0.02 1.32 5.37 -2.39 -0.01 1.30 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.09 3.05 7.72 -2.39 -0.02 3.03 16 34 H 0.11 2.78 7.88 -2.39 -0.02 2.76 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.42 7.84 -2.39 -0.02 1.40 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 3.18 6.83 -2.39 -0.02 3.16 16 41 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 3.78 8.14 -2.38 -0.02 3.76 16 43 H 0.11 5.28 1.99 -2.39 0.00 5.27 16 Total: -1.00 -68.87 348.77 -0.65 -69.52 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.27 Total: 30.96 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.62 Total: -16.21 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -2.13 Total: -129.67 kcal Atomic # 8 Polarization: -101.27 SS G_CDS: -5.12 Total: -106.39 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 108.22 SS G_CDS: -0.32 Total: 107.90 kcal Total: -68.87 -0.65 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451685929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.067 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds