Wall clock time and date at job start Fri Apr 10 2020 17:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46564 * 180.02562 * 8 6 5 10 10 C 1.36602 * 127.11456 * 264.67882 * 9 8 6 11 11 N 1.30332 * 107.27757 * 179.89682 * 10 9 8 12 12 N 1.28532 * 109.99907 * 0.38293 * 11 10 9 13 13 C 1.31037 * 109.85737 * 359.75514 * 12 11 10 14 14 O 1.35532 * 126.45013 * 179.97438 * 13 12 11 15 15 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 16 16 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 17 17 C 1.46509 * 125.97450 * 359.96761 * 16 2 1 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 2 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.46840 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 299.99717 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 30 30 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 31 31 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 32 32 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 33 33 H 1.07991 * 126.36402 * 0.04035 * 10 9 8 34 34 H 0.96702 * 114.00374 * 270.00045 * 14 13 12 35 35 H 1.08994 * 109.46750 * 210.00045 * 17 16 2 36 36 H 1.09004 * 109.46474 * 329.99737 * 17 16 2 37 37 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 7 5.4461 5.1034 0.0256 10 6 5.3097 5.9286 -1.0544 11 7 4.9235 7.0904 -0.6075 12 7 4.8159 7.0553 0.6728 13 6 5.1247 5.8603 1.1128 14 8 5.1251 5.4534 2.4057 15 7 3.6337 -0.6577 -0.0036 16 7 2.3017 -1.0909 -0.0059 17 6 1.8500 -2.4847 -0.0128 18 6 1.6945 -2.9553 -1.4359 19 1 1.9108 -2.2836 -2.2535 20 6 1.2770 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6985 22 14 1.0848 -4.8273 -3.4582 23 1 2.3906 -4.7263 -4.1580 24 1 0.6269 -6.2400 -3.4651 25 1 0.0835 -3.9795 -4.1538 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9719 2.1210 -0.0004 30 1 5.6584 1.0776 0.0049 31 1 6.4547 3.4893 0.9060 32 1 6.4532 3.4983 -0.8739 33 1 5.4866 5.6664 -2.0870 34 1 5.9699 5.5822 2.8583 35 1 2.5849 -3.1072 0.4976 36 1 0.8916 -2.5584 0.5012 37 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548047655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:33 Heat of formation + Delta-G solvation = 100.389858 kcal Electronic energy + Delta-G solvation = -24143.356850 eV Core-core repulsion = 20346.509904 eV Total energy + Delta-G solvation = -3796.846946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.32652 -40.92688 -39.58316 -37.98587 -35.37326 -34.97094 -33.49750 -31.65044 -31.01014 -30.13230 -29.00263 -26.67673 -26.44562 -23.58237 -22.82483 -22.66442 -21.66231 -20.06566 -19.62751 -19.16805 -17.60350 -17.23292 -16.77309 -16.25540 -16.17568 -15.89772 -15.53744 -15.29444 -14.75157 -14.47129 -14.20847 -14.08043 -13.14889 -13.12219 -12.73609 -12.54833 -12.44016 -12.23622 -11.94332 -11.81316 -11.50678 -11.22994 -11.04093 -10.87930 -10.63049 -10.55499 -10.32107 -10.10935 -9.79408 -9.66504 -9.47098 -8.71241 -8.10142 -7.62591 -6.32783 -4.41098 1.23516 1.62433 1.93954 2.50800 2.54934 2.72880 3.18071 3.22418 3.25838 3.36003 3.49574 3.61247 4.02306 4.18388 4.24367 4.31392 4.34233 4.91447 5.00913 5.26971 5.29925 5.53930 5.56243 5.80971 6.01609 6.05381 6.11392 6.36113 6.36716 6.55352 6.82894 6.95247 6.97574 7.22211 7.42091 7.58893 7.80176 7.87895 7.92960 8.35879 8.49171 8.65761 9.25692 10.74587 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.029657 B = 0.002740 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.886853 B =10214.770461 C =10364.489841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.289 4.289 4 C 0.259 3.741 5 N -0.623 5.623 6 C 0.500 3.500 7 O -0.493 6.493 8 C 0.096 3.904 9 N -0.474 5.474 10 C 0.176 3.824 11 N -0.280 5.280 12 N -0.286 5.286 13 C 0.364 3.636 14 O -0.432 6.432 15 N -0.316 5.316 16 N -0.313 5.313 17 C 0.258 3.742 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.891 5.891 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.412 0.588 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.227 0.773 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.888 15.270 2.477 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.320 4.320 4 C 0.006 3.994 5 N -0.271 5.271 6 C 0.282 3.718 7 O -0.365 6.365 8 C -0.032 4.032 9 N -0.178 5.178 10 C -0.111 4.111 11 N -0.121 5.121 12 N -0.136 5.136 13 C 0.060 3.940 14 O -0.231 6.231 15 N -0.147 5.147 16 N -0.096 5.096 17 C 0.141 3.859 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.734 3.266 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.175 0.825 30 H 0.248 0.752 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.243 0.757 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.696 15.528 2.599 19.034 hybrid contribution 0.841 -1.565 -0.752 1.930 sum 11.537 13.963 1.847 18.207 Atomic orbital electron populations 1.20401 0.87758 1.03998 1.02685 1.21081 0.95039 0.87033 1.00523 1.21220 0.89710 0.99814 1.21243 1.18897 0.86890 0.89608 1.03957 1.42225 1.07965 1.04544 1.72416 1.20484 0.91187 0.82120 0.77997 1.90776 1.25974 1.73533 1.46203 1.21603 0.95760 0.77801 1.08027 1.46456 1.51979 1.10912 1.08434 1.26419 1.03094 0.87163 0.94377 1.74229 1.16471 1.19177 1.02183 1.74632 1.20423 1.14380 1.04143 1.22123 1.01978 0.87234 0.82708 1.85006 1.38946 1.83710 1.15447 1.77247 1.00187 1.08267 1.28967 1.49042 1.00835 1.07914 1.51802 1.19727 0.96057 0.71119 0.99027 1.21267 1.47249 0.98034 0.91249 0.91783 1.24928 0.94565 0.96000 0.98206 1.69901 1.44600 1.07068 1.31271 0.86403 0.78835 0.77736 0.83652 1.19969 1.20895 1.19879 0.90945 0.89766 0.90546 0.82506 0.75218 0.85365 0.84576 0.75723 0.73859 0.92925 0.92689 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.71 9.52 -39.83 -0.38 -6.09 16 4 C 0.26 4.84 8.11 -154.38 -1.25 3.59 16 5 N -0.62 -7.86 5.45 -11.13 -0.06 -7.92 16 6 C 0.50 5.77 7.87 -10.98 -0.09 5.69 16 7 O -0.49 -8.15 13.56 5.55 0.08 -8.08 16 8 C 0.10 0.54 6.69 -5.19 -0.03 0.50 16 9 N -0.47 -4.21 2.29 -121.04 -0.28 -4.49 16 10 C 0.18 1.61 12.80 -89.07 -1.14 0.47 16 11 N -0.28 -3.65 12.18 29.87 0.36 -3.29 16 12 N -0.29 -4.00 12.22 29.65 0.36 -3.63 16 13 C 0.36 4.10 9.22 -88.75 -0.82 3.28 16 14 O -0.43 -3.92 13.62 -18.29 -0.25 -4.17 16 15 N -0.32 -6.85 12.59 31.44 0.40 -6.46 16 16 N -0.31 -7.15 3.59 -58.32 -0.21 -7.36 16 17 C 0.26 6.42 5.81 -5.19 -0.03 6.39 16 18 C -0.54 -14.45 9.39 -34.44 -0.32 -14.78 16 19 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.49 13.29 55.43 0.74 -23.76 16 22 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 30 H 0.41 3.60 8.82 -40.82 -0.36 3.24 16 31 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.14 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.23 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.40 1.07 9.06 45.56 0.41 1.49 16 35 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -38.50 335.37 -6.34 -44.84 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.14 Total: 2.75 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -4.37 Total: 0.94 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 1.31 Total: -56.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.17 Total: -12.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -38.50 -6.34 -44.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548047655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.230 kcal (2) G-P(sol) polarization free energy of solvation -38.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds