Wall clock time and date at job start Fri Apr 10 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47101 * 2 1 4 4 C 1.38287 * 119.97319 * 270.02248 * 3 2 1 5 5 C 1.38247 * 120.11084 * 180.02562 * 4 3 2 6 6 C 1.38168 * 120.05649 * 359.67852 * 5 4 3 7 7 C 1.38708 * 119.94125 * 0.57375 * 6 5 4 8 8 O 1.35904 * 120.05570 * 179.72127 * 7 6 5 9 9 C 1.42903 * 116.99628 * 359.72917 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 O 1.21286 * 120.00016 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.37091 * 119.99890 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00358 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99923 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00057 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47061 * 60.00683 * 21 19 17 23 23 H 1.48505 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47452 * 300.00255 * 21 19 17 25 25 C 1.38123 * 119.97441 * 90.00342 * 3 2 1 26 26 H 1.08994 * 109.47069 * 59.99586 * 1 2 3 27 27 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46460 * 299.99993 * 1 2 3 29 29 H 1.09001 * 109.46820 * 239.99604 * 2 1 3 30 30 H 1.08999 * 109.46607 * 120.00323 * 2 1 3 31 31 H 1.08000 * 119.94054 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.96942 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.02385 * 180.29699 * 6 5 4 34 34 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 35 35 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 36 36 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 38 38 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 39 39 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 40 40 H 0.96998 * 120.00134 * 179.97438 * 20 19 17 41 41 H 1.08006 * 120.02399 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7235 3.3755 -1.2012 6 6 2.9498 4.0326 -0.0070 7 6 2.7250 3.3795 1.1959 8 8 2.9522 4.0217 2.3719 9 6 3.4279 5.3670 2.2949 10 6 3.6201 5.9121 3.6867 11 8 3.3744 5.2168 4.6495 12 7 4.0660 7.1720 3.8613 13 6 4.2534 7.7017 5.2143 14 6 4.7549 9.1205 5.1332 15 8 4.9374 9.6383 4.0517 16 7 5.0007 9.8139 6.2625 17 6 5.4574 11.1044 6.1887 18 1 5.6199 11.5656 5.2258 19 6 5.7103 11.8195 7.3530 20 7 5.5121 11.2586 8.5247 21 14 6.3333 13.5777 7.2525 22 1 5.3431 14.4130 6.5265 23 1 6.5236 14.1145 8.6240 24 1 7.6289 13.6031 6.5273 25 6 2.2625 2.0713 1.1965 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0818 1.5618 -2.1324 32 1 2.9027 3.8820 -2.1382 33 1 3.3056 5.0523 -0.0103 34 1 2.7005 5.9797 1.7624 35 1 4.3787 5.3863 1.7622 36 1 4.2628 7.7279 3.0912 37 1 3.3025 7.6827 5.7469 38 1 4.9805 7.0888 5.7469 39 1 4.8544 9.3998 7.1274 40 1 5.6890 11.7576 9.3375 41 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553423448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:41 Heat of formation + Delta-G solvation = -96.165490 kcal Electronic energy + Delta-G solvation = -23252.865553 eV Core-core repulsion = 19518.742919 eV Total energy + Delta-G solvation = -3734.122634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.58797 -39.52268 -38.30978 -37.62903 -34.54350 -34.11375 -33.75918 -31.45634 -31.04185 -29.47864 -29.11395 -26.89290 -24.56521 -24.09904 -22.74666 -21.32176 -20.28825 -19.63740 -18.24863 -18.15448 -17.28280 -16.52441 -16.37936 -16.09592 -15.48438 -15.33438 -15.05361 -14.83448 -14.54979 -14.25010 -13.96217 -13.81670 -13.75134 -13.39315 -13.32906 -12.90050 -12.41631 -12.26484 -12.16826 -11.92922 -11.71304 -11.66783 -11.32753 -11.18530 -11.13018 -10.99902 -10.53747 -10.35280 -9.82472 -9.67068 -9.07084 -8.94396 -8.69914 -8.42073 -8.14904 -6.55355 -3.97780 1.05491 1.21041 2.46981 2.61578 3.10863 3.19347 3.22771 3.49516 3.62128 3.68405 4.07782 4.42627 4.49407 4.65255 4.75550 4.80328 4.82206 4.88323 4.90294 4.99846 5.04696 5.12954 5.16767 5.28827 5.34312 5.57184 5.63289 5.79269 5.82708 5.87961 5.88468 6.00010 6.06285 6.17450 6.34076 6.48544 6.53706 7.15161 7.41959 7.63273 7.86826 8.26850 8.40226 8.99975 9.34079 9.81562 10.61250 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.045675 B = 0.001925 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.882389 B =14540.797890 C =15039.206171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.216 4.216 7 C 0.135 3.865 8 O -0.289 6.289 9 C 0.043 3.957 10 C 0.514 3.486 11 O -0.526 6.526 12 N -0.703 5.703 13 C 0.111 3.889 14 C 0.427 3.573 15 O -0.598 6.598 16 N -0.547 5.547 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.893 5.893 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.148 4.148 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 -18.219 -16.514 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.177 4.177 5 C -0.094 4.094 6 C -0.235 4.235 7 C 0.090 3.910 8 O -0.201 6.201 9 C -0.036 4.036 10 C 0.298 3.702 11 O -0.402 6.402 12 N -0.359 5.359 13 C -0.017 4.017 14 C 0.212 3.788 15 O -0.485 6.485 16 N -0.181 5.181 17 C -0.437 4.437 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.167 4.167 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.250 0.750 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.938 -18.341 -16.089 25.365 hybrid contribution 0.435 1.214 0.066 1.291 sum -6.503 -17.127 -16.023 24.338 Atomic orbital electron populations 1.21751 0.94479 1.01810 1.02432 1.20566 0.96371 0.92246 1.03094 1.19680 0.96627 0.95956 0.92211 1.20922 1.03893 0.95417 0.97490 1.20924 0.96678 0.94445 0.97390 1.21302 1.08557 1.01377 0.92248 1.19052 0.95239 0.92271 0.84487 1.86158 1.80514 1.25817 1.27579 1.22460 1.01463 0.83018 0.96616 1.19886 0.78143 0.81994 0.90214 1.90743 1.49743 1.57936 1.41732 1.45503 1.66756 1.13450 1.10171 1.20983 1.02406 0.94535 0.83727 1.19687 0.86083 0.87475 0.85539 1.90493 1.59248 1.70826 1.27972 1.41785 1.56189 1.13211 1.06926 1.19686 1.40985 0.88141 0.94847 0.87675 1.25341 0.97153 1.00623 0.94542 1.69604 1.47636 1.38410 0.97662 0.85857 0.79431 0.81273 0.77310 1.19754 1.20820 1.19757 1.20296 1.04962 0.92605 0.98792 0.92508 0.92296 0.92323 0.90804 0.90734 0.86060 0.85718 0.85281 0.88770 0.88755 0.74970 0.89597 0.89589 0.76978 0.91464 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 37.16 0.37 -0.54 16 2 C -0.09 -0.57 6.06 -27.88 -0.17 -0.74 16 3 C -0.04 -0.40 5.13 -104.65 -0.54 -0.94 16 4 C -0.16 -1.33 9.70 -39.56 -0.38 -1.71 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.22 -2.12 9.04 -39.43 -0.36 -2.48 16 7 C 0.14 1.60 6.69 -39.22 -0.26 1.34 16 8 O -0.29 -3.98 9.67 -39.35 -0.38 -4.36 16 9 C 0.04 0.50 5.22 36.01 0.19 0.69 16 10 C 0.51 7.96 7.91 -10.98 -0.09 7.88 16 11 O -0.53 -10.19 16.50 -14.35 -0.24 -10.43 16 12 N -0.70 -11.08 5.53 -61.47 -0.34 -11.42 16 13 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 14 C 0.43 9.52 7.85 -10.98 -0.09 9.44 16 15 O -0.60 -14.86 15.24 5.55 0.08 -14.77 16 16 N -0.55 -13.31 5.29 -10.96 -0.06 -13.37 16 17 C -0.31 -8.22 9.68 -14.94 -0.14 -8.37 16 18 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.57 13.05 55.50 0.72 -22.85 16 21 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.15 -1.60 9.64 -39.43 -0.38 -1.98 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 34 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 35 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 36 H 0.41 6.13 7.44 -40.82 -0.30 5.83 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 40 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -32.25 358.13 -7.69 -39.94 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.48 Total: 12.55 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.38 Total: 4.07 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.33 Total: -47.64 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.53 Total: -29.57 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.25 -7.69 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553423448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.224 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds