Wall clock time and date at job start Fri Apr 10 2020 17:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50693 * 109.47101 * 2 1 4 4 C 1.38287 * 119.97319 * 270.02248 * 3 2 1 5 5 C 1.38247 * 120.11084 * 180.02562 * 4 3 2 6 6 C 1.38168 * 120.05649 * 359.67852 * 5 4 3 7 7 C 1.38708 * 119.94125 * 0.57375 * 6 5 4 8 8 O 1.35904 * 120.05570 * 179.72127 * 7 6 5 9 9 C 1.42903 * 116.99628 * 359.72917 * 8 7 6 10 10 C 1.50701 * 109.46878 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 O 1.21286 * 120.00016 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.37091 * 119.99890 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00358 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99923 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00057 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47061 * 60.00683 * 21 19 17 23 23 H 1.48505 * 109.46988 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47452 * 300.00255 * 21 19 17 25 25 C 1.38123 * 119.97441 * 90.00342 * 3 2 1 26 26 H 1.08994 * 109.47069 * 59.99586 * 1 2 3 27 27 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46460 * 299.99993 * 1 2 3 29 29 H 1.09001 * 109.46820 * 239.99604 * 2 1 3 30 30 H 1.08999 * 109.46607 * 120.00323 * 2 1 3 31 31 H 1.08000 * 119.94054 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.96942 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.02385 * 180.29699 * 6 5 4 34 34 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 35 35 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 36 36 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 38 38 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 39 39 H 0.97000 * 119.99708 * 359.97438 * 16 14 13 40 40 H 0.96998 * 120.00134 * 179.97438 * 20 19 17 41 41 H 1.08006 * 120.02399 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7235 3.3755 -1.2012 6 6 2.9498 4.0326 -0.0070 7 6 2.7250 3.3795 1.1959 8 8 2.9522 4.0217 2.3719 9 6 3.4279 5.3670 2.2949 10 6 3.6201 5.9121 3.6867 11 8 3.3744 5.2168 4.6495 12 7 4.0660 7.1720 3.8613 13 6 4.2534 7.7017 5.2143 14 6 4.7549 9.1205 5.1332 15 8 4.9374 9.6383 4.0517 16 7 5.0007 9.8139 6.2625 17 6 5.4574 11.1044 6.1887 18 1 5.6199 11.5656 5.2258 19 6 5.7103 11.8195 7.3530 20 7 5.5121 11.2586 8.5247 21 14 6.3333 13.5777 7.2525 22 1 5.3431 14.4130 6.5265 23 1 6.5236 14.1145 8.6240 24 1 7.6289 13.6031 6.5273 25 6 2.2625 2.0713 1.1965 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0818 1.5618 -2.1324 32 1 2.9027 3.8820 -2.1382 33 1 3.3056 5.0523 -0.0103 34 1 2.7005 5.9797 1.7624 35 1 4.3787 5.3863 1.7622 36 1 4.2628 7.7279 3.0912 37 1 3.3025 7.6827 5.7469 38 1 4.9805 7.0888 5.7469 39 1 4.8544 9.3998 7.1274 40 1 5.6890 11.7576 9.3375 41 1 2.0829 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553423448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:40 Heat of formation + Delta-G solvation = -117.225107 kcal Electronic energy + Delta-G solvation = -23253.778766 eV Core-core repulsion = 19518.742919 eV Total energy + Delta-G solvation = -3735.035847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53062 -40.76664 -39.89353 -38.58452 -36.28122 -35.38387 -34.70532 -33.39621 -31.88282 -30.39861 -29.99010 -28.27494 -26.27106 -24.79997 -23.45557 -22.23440 -21.47243 -21.26510 -20.08935 -19.13253 -18.50696 -17.53766 -17.52188 -17.07936 -16.78852 -16.66839 -16.44781 -16.23140 -15.67763 -15.48068 -15.29916 -15.00577 -14.54198 -14.36015 -14.07508 -13.99848 -13.76230 -13.59360 -13.54212 -13.02759 -12.89773 -12.73225 -12.47555 -12.35713 -12.14013 -11.95911 -11.84269 -11.63513 -11.56814 -11.10656 -10.58355 -10.31675 -10.10334 -9.76009 -9.17731 -8.51625 -6.02135 0.36646 0.48308 1.36952 1.38914 1.40437 1.44825 1.54763 1.89477 2.26755 2.58416 2.79734 3.09829 3.15498 3.51038 3.82757 3.89440 4.00522 4.05129 4.15677 4.18690 4.26794 4.39711 4.40424 4.40630 4.50001 4.53974 4.66602 4.76727 5.09591 5.10158 5.14102 5.15391 5.34486 5.37511 5.39623 5.50599 5.67943 5.83173 5.90362 6.29834 6.43563 6.47697 7.01440 7.03142 7.42719 7.92319 8.64866 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.045675 B = 0.001925 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.882389 B =14540.797890 C =15039.206171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.048 4.048 4 C -0.160 4.160 5 C -0.078 4.078 6 C -0.222 4.222 7 C 0.110 3.890 8 O -0.319 6.319 9 C 0.048 3.952 10 C 0.515 3.485 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.122 3.878 14 C 0.433 3.567 15 O -0.622 6.622 16 N -0.559 5.559 17 C -0.339 4.339 18 H 0.088 0.912 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.170 4.170 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.419 0.581 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 -18.438 -18.517 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.178 4.178 5 C -0.096 4.096 6 C -0.240 4.240 7 C 0.065 3.935 8 O -0.232 6.232 9 C -0.030 4.030 10 C 0.302 3.698 11 O -0.448 6.448 12 N -0.355 5.355 13 C -0.006 4.006 14 C 0.220 3.780 15 O -0.510 6.510 16 N -0.194 5.194 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.188 4.188 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.258 0.742 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.985 -18.573 -18.114 26.868 hybrid contribution 0.414 1.186 0.608 1.396 sum -6.571 -17.387 -17.506 25.533 Atomic orbital electron populations 1.21736 0.94099 1.02559 1.01879 1.20625 0.96619 0.91060 1.03918 1.19963 0.96074 0.96940 0.91836 1.21290 1.02782 0.95559 0.98127 1.21304 0.95701 0.94604 0.98006 1.21547 1.08360 1.02221 0.91878 1.19290 0.96865 0.92754 0.84585 1.86094 1.81286 1.26670 1.29191 1.22517 1.03725 0.82799 0.93916 1.20544 0.76619 0.81156 0.91487 1.90724 1.51591 1.58884 1.43565 1.45461 1.66776 1.13828 1.09403 1.20798 1.02850 0.91587 0.85360 1.20343 0.84337 0.88721 0.84579 1.90470 1.59821 1.71966 1.28787 1.41843 1.56991 1.12974 1.07595 1.19719 1.42897 0.89531 0.94633 0.89381 1.26145 0.96801 1.04265 0.93945 1.69674 1.47954 1.39800 0.98133 0.84915 0.78793 0.76526 0.77676 1.19449 1.19740 1.19455 1.20457 1.06102 0.92894 0.99383 0.92257 0.90918 0.93658 0.89078 0.90820 0.83624 0.83071 0.83570 0.85999 0.85973 0.74221 0.88655 0.88643 0.76707 0.91062 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 71.98 0.71 -0.90 16 2 C -0.09 -1.02 6.06 29.85 0.18 -0.83 16 3 C -0.05 -0.81 5.13 -19.88 -0.10 -0.91 16 4 C -0.16 -2.28 9.70 22.28 0.22 -2.06 16 5 C -0.08 -1.13 10.04 22.26 0.22 -0.91 16 6 C -0.22 -3.93 9.04 22.37 0.20 -3.72 16 7 C 0.11 2.55 6.69 22.50 0.15 2.70 16 8 O -0.32 -8.77 9.67 -73.43 -0.71 -9.48 16 9 C 0.05 1.06 5.22 71.24 0.37 1.43 16 10 C 0.52 15.64 7.91 87.66 0.69 16.33 16 11 O -0.57 -22.21 16.50 16.01 0.26 -21.94 16 12 N -0.70 -21.40 5.53 -466.78 -2.58 -23.98 16 13 C 0.12 4.30 6.15 85.63 0.53 4.82 16 14 C 0.43 19.38 7.85 87.66 0.69 20.07 16 15 O -0.62 -30.92 15.24 -3.05 -0.05 -30.97 16 16 N -0.56 -27.56 5.29 -306.99 -1.62 -29.18 16 17 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 18 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.26 13.05 21.66 0.28 -47.98 16 21 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 C -0.17 -3.72 9.64 22.36 0.22 -3.50 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.15 1.94 6.30 -2.91 -0.02 1.93 16 34 H 0.12 1.97 7.65 -2.39 -0.02 1.95 16 35 H 0.12 1.97 7.67 -2.39 -0.02 1.95 16 36 H 0.42 11.93 7.44 -92.71 -0.69 11.25 16 37 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 40 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -70.00 358.13 2.62 -67.38 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.35 Total: 38.03 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.36 Total: 14.89 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.92 Total: -101.14 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -0.49 Total: -62.39 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -70.00 2.62 -67.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553423448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.843 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds