Wall clock time and date at job start Fri Apr 10 2020 17:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46807 * 2 1 4 4 H 1.09002 * 109.46458 * 303.95373 * 3 2 1 5 5 C 1.53001 * 109.47042 * 183.95780 * 3 2 1 6 6 O 1.42904 * 109.46779 * 304.99596 * 5 3 2 7 7 N 1.46898 * 109.47346 * 63.95132 * 3 2 1 8 8 C 1.46902 * 110.99726 * 63.83131 * 7 3 2 9 9 C 1.53229 * 109.33958 * 187.25176 * 8 7 3 10 10 N 1.47077 * 108.52233 * 306.16929 * 9 8 7 11 11 S 1.65606 * 120.88375 * 231.20735 * 10 9 8 12 12 O 1.42105 * 104.27490 * 26.04670 * 11 10 9 13 13 O 1.42098 * 104.27851 * 153.90467 * 11 10 9 14 14 C 1.81400 * 104.45069 * 269.97858 * 11 10 9 15 15 C 1.50698 * 109.47418 * 179.97438 * 14 11 10 16 16 H 1.07996 * 119.99793 * 359.97438 * 15 14 11 17 17 C 1.37868 * 120.00209 * 180.02562 * 15 14 11 18 18 N 1.31523 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46833 * 119.99673 * 19 17 15 22 22 H 1.48503 * 109.46909 * 239.99846 * 19 17 15 23 23 C 1.47080 * 118.23799 * 51.18531 * 10 9 8 24 24 C 1.46903 * 110.99772 * 188.12857 * 7 3 2 25 25 H 1.08997 * 109.47154 * 64.54794 * 1 2 3 26 26 H 1.09003 * 109.46773 * 184.54630 * 1 2 3 27 27 H 1.08994 * 109.47155 * 304.54853 * 1 2 3 28 28 H 1.08991 * 109.47458 * 240.00092 * 2 1 3 29 29 H 1.08999 * 109.47204 * 119.99146 * 2 1 3 30 30 H 1.08998 * 109.46802 * 64.99595 * 5 3 2 31 31 H 1.08997 * 109.46995 * 184.99289 * 5 3 2 32 32 H 0.96699 * 113.99727 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.49169 * 307.21497 * 8 7 3 34 34 H 1.09004 * 109.49208 * 67.28830 * 8 7 3 35 35 H 1.09006 * 109.63136 * 65.87821 * 9 8 7 36 36 H 1.09002 * 109.63090 * 186.45783 * 9 8 7 37 37 H 1.09008 * 109.46773 * 300.00284 * 14 11 10 38 38 H 1.09000 * 109.47154 * 59.99224 * 14 11 10 39 39 H 0.96999 * 119.99804 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.62931 * 189.10717 * 23 10 9 41 41 H 1.08996 * 109.62865 * 68.52618 * 23 10 9 42 42 H 1.08994 * 109.49176 * 292.70692 * 24 7 3 43 43 H 1.08999 * 109.48851 * 52.76728 * 24 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6198 1.9764 -0.8525 5 6 3.5667 1.4438 -0.0996 6 8 4.1133 0.6463 0.9528 7 7 1.6298 2.1070 1.2443 8 6 2.2519 1.4684 2.4118 9 6 1.6624 2.0685 3.6926 10 7 1.8071 3.5309 3.6330 11 16 2.4896 4.3694 4.8874 12 8 3.3424 3.4237 5.5181 13 8 3.0169 5.5408 4.2801 14 6 1.0924 4.7858 5.9668 15 6 1.5922 5.5595 7.1596 16 1 2.6451 5.7784 7.2586 17 6 0.7055 5.9869 8.1249 18 7 -0.5767 5.7199 8.0046 19 14 1.3251 6.9453 9.6038 20 1 2.7973 7.1122 9.5039 21 1 0.6761 8.2806 9.6356 22 1 0.9946 6.2044 10.8476 23 6 1.3299 4.2289 2.4295 24 6 1.9325 3.5438 1.1983 25 1 -0.3633 0.4416 -0.9279 26 1 -0.3633 -1.0245 0.0815 27 1 -0.3633 0.5828 0.8464 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8683 1.0313 -1.0623 31 1 3.9358 2.4655 -0.0104 32 1 5.0792 0.6021 0.9517 33 1 2.0550 0.3966 2.3881 34 1 3.3279 1.6414 2.3907 35 1 0.6066 1.8077 3.7670 36 1 2.1997 1.6824 4.5589 37 1 0.3748 5.3925 5.4144 38 1 0.6089 3.8694 6.3051 39 1 -1.2005 6.0204 8.6839 40 1 1.6474 5.2712 2.4606 41 1 0.2423 4.1758 2.3824 42 1 3.0129 3.6878 1.1943 43 1 1.5043 3.9769 0.2944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584850493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:58 Heat of formation + Delta-G solvation = -114.219306 kcal Electronic energy + Delta-G solvation = -24915.800273 eV Core-core repulsion = 21316.338719 eV Total energy + Delta-G solvation = -3599.461555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72782 -36.84915 -36.17380 -35.07441 -34.86789 -33.32114 -32.30773 -30.84521 -28.99149 -28.75070 -25.53536 -23.97081 -23.44306 -23.12371 -21.03415 -19.75403 -18.03795 -17.75701 -17.25459 -16.44310 -15.86838 -15.49405 -15.40626 -15.30854 -14.79543 -14.62962 -14.25465 -14.04732 -13.80190 -13.45423 -12.88980 -12.68315 -12.53824 -12.43438 -12.06962 -11.98980 -11.70221 -11.50652 -11.39876 -11.36705 -11.28777 -11.12919 -10.92066 -10.91169 -10.75305 -10.61623 -10.53291 -10.32273 -9.97412 -9.77824 -9.34898 -8.70324 -8.54168 -8.00778 -6.31391 -4.42168 1.33440 3.20775 3.27626 3.34782 3.49555 3.82774 4.15458 4.25614 4.62321 4.78688 4.86036 4.94917 4.98100 5.08190 5.11585 5.15763 5.25745 5.34461 5.43631 5.49674 5.56213 5.64051 5.67592 5.74216 5.84790 5.86537 5.94383 6.06382 6.13260 6.22080 6.35077 6.41406 6.46195 6.66528 6.83703 7.09634 7.16057 7.18125 7.38131 7.46375 7.77408 8.60388 9.25498 10.80305 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.003708 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.856655 B = 7550.020612 C = 7838.309669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.086 3.914 4 H 0.091 0.909 5 C 0.040 3.960 6 O -0.558 6.558 7 N -0.524 5.524 8 C 0.045 3.955 9 C 0.121 3.879 10 N -1.010 6.010 11 S 2.582 3.418 12 O -0.979 6.979 13 O -0.982 6.982 14 C -0.418 4.418 15 C -0.535 4.535 16 H 0.069 0.931 17 C 0.076 3.924 18 N -0.878 5.878 19 Si 0.904 3.096 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.126 3.874 24 C 0.043 3.957 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.372 0.628 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.267 0.733 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -9.795 -17.444 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.024 4.024 4 H 0.109 0.891 5 C -0.039 4.039 6 O -0.363 6.363 7 N -0.249 5.249 8 C -0.083 4.083 9 C -0.005 4.005 10 N -0.846 5.846 11 S 2.684 3.316 12 O -0.970 6.970 13 O -0.972 6.972 14 C -0.554 4.554 15 C -0.574 4.574 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.514 5.514 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.203 1.203 23 C 0.000 4.000 24 C -0.086 4.086 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.537 -9.723 -17.119 19.851 hybrid contribution 0.960 0.652 0.509 1.267 sum 3.497 -9.071 -16.611 19.247 Atomic orbital electron populations 1.21690 0.95266 1.01000 1.02368 1.21482 0.96406 0.94754 1.02174 1.21938 0.90437 0.96521 0.93458 0.89114 1.22976 0.96461 0.94393 0.90091 1.86706 1.25349 1.72791 1.51499 1.62042 1.58579 1.02231 1.02002 1.22662 0.98360 0.98489 0.88828 1.21525 1.01237 0.79279 0.98453 1.58020 1.79499 1.15372 1.31719 1.05945 0.78283 0.73220 0.74196 1.93454 1.64959 1.62160 1.76416 1.93445 1.78478 1.49662 1.75635 1.27763 1.12106 1.06763 1.08794 1.20381 0.94651 1.37252 1.05108 0.91318 1.24932 0.94651 0.95196 0.98239 1.69971 1.01972 1.44556 1.34925 0.86327 0.79635 0.79528 0.81527 1.19003 1.20325 1.20316 1.21389 0.99143 0.96158 0.83294 1.22445 0.98879 0.88532 0.98755 0.93527 0.93578 0.91061 0.92439 0.90792 0.93672 0.93616 0.78094 0.89844 0.91569 0.91562 0.88847 0.89835 0.89797 0.92291 0.88748 0.91120 0.94476 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.85 37.16 0.37 -0.96 16 2 C -0.11 -1.02 5.02 -26.73 -0.13 -1.15 16 3 C 0.09 0.83 2.31 -67.71 -0.16 0.67 16 4 H 0.09 0.78 8.01 -51.93 -0.42 0.36 16 5 C 0.04 0.36 6.35 37.16 0.24 0.60 16 6 O -0.56 -5.44 9.27 -35.23 -0.33 -5.77 16 7 N -0.52 -6.28 3.92 -226.34 -0.89 -7.17 16 8 C 0.05 0.61 4.07 -3.70 -0.02 0.59 16 9 C 0.12 1.88 6.62 -3.61 -0.02 1.85 16 10 N -1.01 -17.57 3.26 -113.24 -0.37 -17.94 16 11 S 2.58 56.60 5.39 -107.50 -0.58 56.02 16 12 O -0.98 -23.56 16.61 -57.54 -0.96 -24.52 16 13 O -0.98 -23.43 16.61 -57.54 -0.96 -24.39 16 14 C -0.42 -10.33 5.93 36.00 0.21 -10.12 16 15 C -0.53 -15.02 9.13 -34.44 -0.31 -15.34 16 16 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 17 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 18 N -0.88 -25.08 13.29 55.43 0.74 -24.35 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.13 1.88 6.62 -3.60 -0.02 1.85 16 24 C 0.04 0.54 5.22 -3.70 -0.02 0.52 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.78 5.73 -51.93 -0.30 0.49 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 32 H 0.37 2.34 9.12 45.56 0.42 2.76 16 33 H 0.08 1.06 5.96 -51.93 -0.31 0.75 16 34 H 0.07 0.98 5.74 -51.93 -0.30 0.68 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.53 6.87 -51.93 -0.36 1.17 16 37 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 38 H 0.08 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.09 1.45 6.87 -51.93 -0.36 1.10 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 43 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -33.84 344.17 -9.18 -43.03 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.04 Total: 3.20 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 0.03 Total: -19.46 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.52 Total: -49.46 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -2.24 Total: -54.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 56.60 SS G_CDS: -0.58 Total: 56.02 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.84 -9.18 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584850493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.191 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds