Wall clock time and date at job start Fri Apr 10 2020 17:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42895 * 110.88476 * 59.01801 * 9 7 2 11 11 C 1.55153 * 111.00367 * 182.90010 * 9 7 2 12 12 C 1.54320 * 102.94383 * 153.57571 * 11 9 7 13 13 N 1.47028 * 107.26701 * 337.80525 * 12 11 9 14 14 C 1.34783 * 125.64488 * 178.99212 * 13 12 11 15 15 O 1.21587 * 119.99779 * 179.97438 * 14 13 12 16 16 N 1.34778 * 120.00138 * 359.97438 * 14 13 12 17 17 C 1.46502 * 120.00094 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46998 * 180.02562 * 17 16 14 19 19 C 1.38284 * 119.97437 * 90.00262 * 18 17 16 20 20 C 1.38236 * 120.11137 * 179.97438 * 19 18 17 21 21 C 1.38168 * 120.06072 * 0.04711 * 20 19 18 22 22 C 1.38713 * 119.93803 * 359.97386 * 21 20 19 23 23 O 1.35899 * 120.05469 * 180.02562 * 22 21 20 24 24 C 1.38129 * 119.96916 * 269.72138 * 18 17 16 25 25 C 1.47463 * 108.72566 * 358.97795 * 13 12 11 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 0.96695 * 114.00567 * 300.69748 * 10 9 7 28 28 H 1.09004 * 110.72306 * 271.93908 * 11 9 7 29 29 H 1.09006 * 110.71876 * 35.20834 * 11 9 7 30 30 H 1.09000 * 109.88397 * 97.21902 * 12 11 9 31 31 H 1.09003 * 109.88321 * 218.39347 * 12 11 9 32 32 H 0.96998 * 119.99692 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.47020 * 300.00347 * 17 16 14 34 34 H 1.08998 * 109.46874 * 59.99975 * 17 16 14 35 35 H 1.08006 * 119.94351 * 359.97438 * 19 18 17 36 36 H 1.08004 * 119.97419 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.03464 * 180.02562 * 21 20 19 38 38 H 0.96707 * 113.99671 * 89.99773 * 23 22 21 39 39 H 1.08004 * 120.02557 * 0.02562 * 24 18 17 40 40 H 1.08998 * 110.34826 * 265.25052 * 25 13 12 41 41 H 1.09002 * 110.40574 * 142.91269 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4060 -2.5944 -1.1538 11 6 2.2253 -3.7043 0.0697 12 6 1.3640 -4.8050 0.7241 13 7 0.2765 -4.1337 1.4510 14 6 -0.7038 -4.7492 2.1416 15 8 -1.5548 -4.0903 2.7072 16 7 -0.7406 -6.0949 2.2052 17 6 -1.8058 -6.7639 2.9563 18 6 -1.6190 -8.2569 2.8712 19 6 -0.8553 -8.9128 3.8192 20 6 -0.6826 -10.2822 3.7442 21 6 -1.2720 -10.9991 2.7206 22 6 -2.0382 -10.3434 1.7681 23 8 -2.6194 -11.0463 0.7607 24 6 -2.2156 -8.9697 1.8495 25 6 0.4356 -2.6754 1.3000 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2526 -1.8892 -1.2171 28 1 2.5433 -4.0059 -0.9284 29 1 3.0862 -3.4659 0.6943 30 1 0.9489 -5.4569 -0.0445 31 1 1.9704 -5.3864 1.4186 32 1 -0.0618 -6.6205 1.7536 33 1 -1.7655 -6.4519 3.9999 34 1 -2.7733 -6.4937 2.5334 35 1 -0.3931 -8.3541 4.6197 36 1 -0.0860 -10.7923 4.4861 37 1 -1.1371 -12.0691 2.6626 38 1 -3.5078 -11.3679 0.9671 39 1 -2.8153 -8.4575 1.1116 40 1 0.9834 -2.2641 2.1478 41 1 -0.5381 -2.1945 1.2070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591925309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:08 Heat of formation + Delta-G solvation = -117.598493 kcal Electronic energy + Delta-G solvation = -24760.832970 eV Core-core repulsion = 21025.780932 eV Total energy + Delta-G solvation = -3735.052038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35763 -40.65242 -39.14384 -37.88508 -36.05400 -35.71143 -34.18334 -32.58025 -31.51364 -30.74304 -29.56363 -27.67109 -26.30692 -24.13333 -23.55315 -22.46681 -21.45713 -21.04057 -19.50093 -19.07020 -18.61118 -17.49495 -17.20695 -17.10202 -16.85764 -16.58760 -16.26167 -16.05609 -15.42830 -15.22835 -14.82974 -14.72140 -14.61485 -14.08163 -13.90892 -13.67557 -13.49536 -13.25020 -13.21679 -12.86347 -12.79144 -12.51631 -12.47568 -12.31164 -12.19184 -12.09177 -11.47770 -11.35622 -11.21011 -10.65702 -10.34869 -10.22838 -9.93339 -9.61579 -9.33431 -8.24274 -6.41293 0.14903 0.31150 1.41754 1.45032 1.56053 1.72954 2.13573 2.39025 2.64792 3.01912 3.14304 3.28143 3.63047 3.80599 3.91279 4.10042 4.17416 4.19928 4.30602 4.33523 4.35089 4.57750 4.62497 4.67073 4.76808 4.90471 5.00446 5.06265 5.10059 5.28875 5.37282 5.39737 5.43500 5.43675 5.46567 5.55568 5.77225 5.85634 6.04046 6.16179 6.66318 6.85351 7.04044 7.30137 7.37059 7.54456 8.81435 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.030433 B = 0.002803 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.830419 B = 9988.556619 C =10124.207133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.589 6.589 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.711 3.289 15 O -0.643 6.643 16 N -0.726 5.726 17 C 0.182 3.818 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.100 4.100 21 C -0.140 4.140 22 C 0.096 3.904 23 O -0.512 6.512 24 C -0.138 4.138 25 C 0.127 3.873 26 H 0.269 0.731 27 H 0.375 0.625 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.410 0.590 39 H 0.124 0.876 40 H 0.042 0.958 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -22.517 6.349 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.397 6.397 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.413 3.587 15 O -0.526 6.526 16 N -0.383 5.383 17 C 0.059 3.941 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.158 4.158 22 C 0.052 3.948 23 O -0.325 6.325 24 C -0.157 4.157 25 C 0.004 3.996 26 H 0.079 0.921 27 H 0.224 0.776 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.243 0.757 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.269 0.731 39 H 0.142 0.858 40 H 0.060 0.940 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.681 -22.402 6.396 23.307 hybrid contribution -0.635 1.563 0.000 1.687 sum -1.315 -20.839 6.396 21.838 Atomic orbital electron populations 1.69791 1.07243 1.28364 1.50272 1.25864 0.95760 1.02964 0.93109 0.85378 0.79176 0.78845 0.77437 1.18651 1.20635 1.20902 1.21844 0.94013 0.91134 1.52212 0.91125 1.19884 0.86741 0.93297 0.81020 1.86069 1.51477 1.54717 1.47475 1.22598 0.97316 0.93476 1.01390 1.22104 0.88111 0.95685 0.95562 1.47870 1.27729 1.08393 1.52924 1.15727 0.81029 0.82510 0.79480 1.90848 1.42341 1.65904 1.53510 1.44990 1.32554 1.03186 1.57583 1.20008 0.89956 0.87589 0.96587 1.19597 0.99623 0.93604 0.96466 1.21345 0.97609 0.95290 0.98769 1.21357 0.98788 0.93463 0.98187 1.21753 0.98603 1.01705 0.93748 1.18561 0.97501 0.89746 0.89034 1.84794 1.36519 1.72632 1.38566 1.21450 1.01557 0.94326 0.98414 1.22691 0.99865 0.77532 0.99545 0.92137 0.77597 0.89716 0.89081 0.91297 0.89175 0.75736 0.90834 0.92060 0.84362 0.82599 0.83431 0.73086 0.85826 0.93962 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.71 10.69 21.45 0.23 -50.48 16 2 C 0.02 1.25 5.29 84.66 0.45 1.69 16 3 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.55 -28.90 8.25 25.60 0.21 -28.69 16 8 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 9 C 0.23 11.30 0.88 -10.15 -0.01 11.29 16 10 O -0.59 -30.93 13.17 -148.98 -1.96 -32.89 16 11 C -0.11 -4.17 6.13 31.78 0.19 -3.98 16 12 C 0.11 3.56 6.15 86.73 0.53 4.09 16 13 N -0.63 -26.52 3.33 -829.64 -2.76 -29.28 16 14 C 0.71 29.48 8.49 179.05 1.52 31.00 16 15 O -0.64 -32.47 16.60 -3.99 -0.07 -32.53 16 16 N -0.73 -21.79 5.51 -482.29 -2.66 -24.45 16 17 C 0.18 4.67 5.80 85.63 0.50 5.17 16 18 C -0.09 -1.83 5.25 -19.88 -0.10 -1.93 16 19 C -0.11 -1.77 9.70 22.28 0.22 -1.56 16 20 C -0.10 -1.26 10.04 22.25 0.22 -1.04 16 21 C -0.14 -1.91 9.99 22.37 0.22 -1.69 16 22 C 0.10 1.65 6.70 22.51 0.15 1.80 16 23 O -0.51 -7.99 13.50 -92.41 -1.25 -9.24 16 24 C -0.14 -2.72 9.64 22.37 0.22 -2.51 16 25 C 0.13 6.39 5.51 86.85 0.48 6.87 16 26 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 27 H 0.37 20.77 7.24 -74.06 -0.54 20.24 16 28 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 29 H 0.09 3.18 8.03 -2.38 -0.02 3.16 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.41 10.24 7.45 -92.71 -0.69 9.55 16 33 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 34 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.41 2.34 9.06 -74.05 -0.67 1.67 16 39 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 41 H 0.04 2.37 7.48 -2.39 -0.02 2.35 16 Total: -1.00 -71.03 347.68 -2.46 -73.49 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.82 Total: 40.81 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 4.80 Total: 20.52 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -5.19 Total: -104.21 kcal Atomic # 8 Polarization: -71.38 SS G_CDS: -3.28 Total: -74.66 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -71.03 -2.46 -73.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591925309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.110 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds