Wall clock time and date at job start Fri Apr 10 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35423 * 117.00150 * 2 1 4 4 N 1.32239 * 119.80265 * 0.31135 * 3 2 1 5 5 C 1.31878 * 121.80158 * 180.31185 * 4 3 2 6 6 C 1.50704 * 119.40644 * 179.67875 * 5 4 3 7 7 C 1.38355 * 121.18408 * 359.65660 * 5 4 3 8 8 C 1.38333 * 119.45894 * 0.02562 * 7 5 4 9 9 C 1.39981 * 118.35157 * 0.02562 * 8 7 5 10 10 C 1.47521 * 120.60059 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00179 * 173.52943 * 10 9 8 12 12 N 1.34777 * 119.99773 * 353.53714 * 10 9 8 13 13 C 1.47431 * 125.64647 * 185.80717 * 12 10 9 14 14 C 1.55388 * 104.86990 * 204.16347 * 13 12 10 15 15 C 1.55152 * 101.36951 * 323.01488 * 14 13 12 16 16 O 1.42901 * 110.72329 * 277.04409 * 15 14 13 17 17 C 1.50696 * 110.72320 * 153.94814 * 15 14 13 18 18 H 1.08005 * 119.99750 * 268.84320 * 17 15 14 19 19 C 1.37874 * 120.00109 * 88.83673 * 17 15 14 20 20 N 1.31520 * 119.99924 * 172.98479 * 19 17 15 21 21 Si 1.86802 * 120.00085 * 352.99016 * 19 17 15 22 22 H 1.48496 * 109.47285 * 84.21477 * 21 19 17 23 23 H 1.48500 * 109.46964 * 204.21362 * 21 19 17 24 24 H 1.48498 * 109.46973 * 324.21608 * 21 19 17 25 25 C 1.47022 * 125.65122 * 5.84020 * 12 10 9 26 26 H 1.09006 * 109.46509 * 59.99832 * 1 2 3 27 27 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47478 * 300.00361 * 1 2 3 29 29 H 1.09000 * 109.46933 * 269.97587 * 6 5 4 30 30 H 1.09003 * 109.46948 * 29.98178 * 6 5 4 31 31 H 1.09003 * 109.46474 * 149.97871 * 6 5 4 32 32 H 1.08008 * 120.27182 * 180.02562 * 7 5 4 33 33 H 1.08003 * 120.82692 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.36923 * 322.99505 * 13 12 10 35 35 H 1.08995 * 110.36761 * 85.21067 * 13 12 10 36 36 H 1.09000 * 111.18523 * 204.97681 * 14 13 12 37 37 H 1.09000 * 111.02078 * 80.98664 * 14 13 12 38 38 H 0.96701 * 114.00426 * 172.22432 * 16 15 14 39 39 H 0.97007 * 119.99563 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.87895 * 59.49173 * 25 12 10 41 41 H 1.08999 * 110.01111 * 298.40431 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0062 5 6 1.8772 3.5084 0.0004 6 6 1.0000 4.7339 0.0006 7 6 3.2527 3.6574 -0.0055 8 6 4.0588 2.5332 -0.0058 9 6 3.4450 1.2751 -0.0006 10 6 4.2569 0.0434 -0.0013 11 8 3.7184 -1.0398 0.1219 12 7 5.5956 0.1189 -0.1383 13 6 6.5111 -1.0284 -0.2766 14 6 7.8871 -0.5024 0.2178 15 6 7.8673 0.9544 -0.3156 16 8 8.2742 0.9971 -1.6849 17 6 8.7454 1.8429 0.5273 18 1 8.3278 2.3692 1.3729 19 6 10.0818 1.9839 0.2191 20 7 10.8168 2.8620 0.8659 21 14 10.8486 0.9276 -1.1173 22 1 10.6064 1.5528 -2.4423 23 1 12.3107 0.8164 -0.8824 24 1 10.2383 -0.4258 -1.0896 25 6 6.3848 1.3588 -0.1737 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7845 5.0266 -1.0270 30 1 0.0670 4.5127 0.5189 31 1 1.5145 5.5486 0.5103 32 1 3.6935 4.6434 -0.0099 33 1 5.1350 2.6238 -0.0100 34 1 6.1766 -1.8580 0.3462 35 1 6.5747 -1.3393 -1.3194 36 1 8.7071 -1.0690 -0.2234 37 1 7.9440 -0.5192 1.3062 38 1 8.1663 1.8635 -2.1005 39 1 11.7572 2.9609 0.6493 40 1 6.2397 1.9171 0.7511 41 1 6.0836 1.9684 -1.0256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:22 Heat of formation + Delta-G solvation = -53.731825 kcal Electronic energy + Delta-G solvation = -25814.906534 eV Core-core repulsion = 22082.623962 eV Total energy + Delta-G solvation = -3732.282572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00668 -39.42794 -38.05673 -37.50300 -34.77836 -33.34579 -32.44989 -31.84671 -30.31334 -28.62303 -28.50440 -26.87581 -25.46468 -23.50217 -22.91930 -21.96073 -20.09389 -19.69194 -18.10105 -17.80749 -17.07475 -16.52222 -16.14762 -15.73106 -15.17217 -15.09704 -14.77900 -14.55966 -14.22183 -14.20406 -13.59866 -13.37618 -13.04757 -12.91028 -12.71948 -12.54578 -12.42564 -12.20812 -12.07024 -11.78630 -11.69512 -11.47721 -11.10561 -11.05565 -10.46526 -10.42564 -10.17520 -9.94586 -9.87318 -9.43580 -9.30307 -8.72046 -8.57556 -8.51679 -8.14824 -6.28101 -4.41085 0.68869 1.24299 3.01147 3.05900 3.32438 3.40528 3.47593 3.61643 3.84530 4.01920 4.41671 4.62962 4.74012 4.90003 4.93158 5.07392 5.13941 5.18502 5.24171 5.25324 5.33848 5.35059 5.47988 5.53039 5.54355 5.73919 5.78736 5.81433 5.89759 6.01613 6.08688 6.13820 6.32984 6.47358 6.66278 6.77583 7.00582 7.21206 7.34070 7.70397 7.90700 8.02838 8.49823 8.54310 8.71416 9.33258 10.80490 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.004272 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.550785 B = 6552.674268 C = 7565.746983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.272 6.272 3 C 0.373 3.627 4 N -0.550 5.550 5 C 0.184 3.816 6 C -0.106 4.106 7 C -0.219 4.219 8 C -0.040 4.040 9 C -0.208 4.208 10 C 0.576 3.424 11 O -0.532 6.532 12 N -0.607 5.607 13 C 0.107 3.893 14 C -0.123 4.123 15 C 0.218 3.782 16 O -0.561 6.561 17 C -0.558 4.558 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.885 5.885 21 Si 0.944 3.056 22 H -0.289 1.289 23 H -0.324 1.324 24 H -0.268 1.268 25 C 0.071 3.929 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.346 2.085 -3.005 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.176 6.176 3 C 0.192 3.808 4 N -0.276 5.276 5 C 0.047 3.953 6 C -0.164 4.164 7 C -0.239 4.239 8 C -0.064 4.064 9 C -0.214 4.214 10 C 0.365 3.635 11 O -0.410 6.410 12 N -0.341 5.341 13 C -0.015 4.015 14 C -0.161 4.161 15 C 0.178 3.822 16 O -0.369 6.369 17 C -0.595 4.595 18 H 0.099 0.901 19 C -0.127 4.127 20 N -0.520 5.520 21 Si 0.778 3.222 22 H -0.216 1.216 23 H -0.255 1.255 24 H -0.194 1.194 25 C -0.051 4.051 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.200 0.800 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.239 0.585 -2.762 17.468 hybrid contribution 0.958 0.470 -0.712 1.282 sum -16.281 1.054 -3.474 16.681 Atomic orbital electron populations 1.22907 0.77957 1.03012 1.02082 1.86540 1.21986 1.23123 1.85917 1.19772 0.88057 0.84829 0.88135 1.67230 1.40259 0.98203 1.21872 1.21170 0.92319 0.91851 0.89966 1.20798 0.99261 0.92919 1.03378 1.21833 0.93654 1.00264 1.08175 1.23339 1.04094 0.90296 0.88696 1.19967 0.91244 0.95239 1.14904 1.17430 0.80544 0.88159 0.77404 1.90782 1.71034 1.28956 1.50272 1.48377 1.04945 1.09408 1.71336 1.22400 0.89530 0.88733 1.00789 1.23250 0.94668 0.96842 1.01380 1.20149 0.88271 0.93632 0.80147 1.86159 1.86156 1.37421 1.27173 1.21156 0.94160 1.29096 1.15084 0.90079 1.25078 0.96976 0.94219 0.96451 1.69961 1.07818 1.32784 1.41404 0.85817 0.74288 0.81574 0.80472 1.21625 1.25473 1.19390 1.23414 0.94308 0.86477 1.00932 0.92485 0.88577 0.92400 0.89961 0.90399 0.90082 0.83871 0.79966 0.91151 0.91709 0.89664 0.89613 0.78011 0.92280 0.89847 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.46 16 2 O -0.27 -4.51 8.60 -39.62 -0.34 -4.85 16 3 C 0.37 6.12 7.50 -16.61 -0.12 6.00 16 4 N -0.55 -7.84 9.11 -9.21 -0.08 -7.92 16 5 C 0.18 2.21 6.78 -82.53 -0.56 1.65 16 6 C -0.11 -0.83 10.16 36.01 0.37 -0.47 16 7 C -0.22 -2.61 9.71 -39.50 -0.38 -2.99 16 8 C -0.04 -0.57 8.70 -38.89 -0.34 -0.91 16 9 C -0.21 -3.51 5.90 -104.69 -0.62 -4.13 16 10 C 0.58 11.10 7.80 -12.48 -0.10 11.00 16 11 O -0.53 -11.61 15.45 -16.38 -0.25 -11.87 16 12 N -0.61 -11.20 3.33 -172.59 -0.57 -11.77 16 13 C 0.11 1.96 6.94 -2.27 -0.02 1.95 16 14 C -0.12 -2.42 5.90 -24.32 -0.14 -2.56 16 15 C 0.22 4.46 0.67 -89.94 -0.06 4.40 16 16 O -0.56 -11.22 8.80 -35.23 -0.31 -11.53 16 17 C -0.56 -13.69 8.81 -34.44 -0.30 -13.99 16 18 H 0.08 2.15 7.80 -52.48 -0.41 1.74 16 19 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 20 N -0.89 -24.93 13.96 55.43 0.77 -24.16 16 21 Si 0.94 22.11 24.82 -169.99 -4.22 17.89 16 22 H -0.29 -6.63 7.10 56.52 0.40 -6.23 16 23 H -0.32 -7.87 7.11 56.52 0.40 -7.47 16 24 H -0.27 -6.15 5.28 56.52 0.30 -5.85 16 25 C 0.07 1.25 4.21 -3.06 -0.01 1.24 16 26 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.18 2.54 2.90 -53.98 -0.16 2.38 16 34 H 0.07 1.25 7.98 -51.93 -0.41 0.83 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.71 6.21 -51.93 -0.32 1.39 16 37 H 0.09 1.68 8.04 -51.93 -0.42 1.27 16 38 H 0.37 6.34 9.00 45.56 0.41 6.75 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 1.45 6.29 -51.93 -0.33 1.13 16 41 H 0.07 1.06 6.56 -51.93 -0.34 0.72 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -32.34 330.49 -5.96 -38.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.59 Total: 6.33 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.34 Total: 4.59 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.12 Total: -43.85 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.90 Total: -28.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.22 Total: 17.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.34 -5.96 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.439 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds