Wall clock time and date at job start Fri Apr 10 2020 17:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35423 * 117.00150 * 2 1 4 4 N 1.32239 * 119.80265 * 0.31135 * 3 2 1 5 5 C 1.31878 * 121.80158 * 180.31185 * 4 3 2 6 6 C 1.50704 * 119.40644 * 179.67875 * 5 4 3 7 7 C 1.38355 * 121.18408 * 359.65660 * 5 4 3 8 8 C 1.38333 * 119.45894 * 0.02562 * 7 5 4 9 9 C 1.39981 * 118.35157 * 0.02562 * 8 7 5 10 10 C 1.47521 * 120.60059 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00179 * 173.52943 * 10 9 8 12 12 N 1.34777 * 119.99773 * 353.53714 * 10 9 8 13 13 C 1.47431 * 125.64647 * 185.80717 * 12 10 9 14 14 C 1.55388 * 104.86990 * 204.16347 * 13 12 10 15 15 C 1.55152 * 101.36951 * 323.01488 * 14 13 12 16 16 O 1.42901 * 110.72329 * 277.04409 * 15 14 13 17 17 C 1.50696 * 110.72320 * 153.94814 * 15 14 13 18 18 H 1.08005 * 119.99750 * 268.84320 * 17 15 14 19 19 C 1.37874 * 120.00109 * 88.83673 * 17 15 14 20 20 N 1.31520 * 119.99924 * 172.98479 * 19 17 15 21 21 Si 1.86802 * 120.00085 * 352.99016 * 19 17 15 22 22 H 1.48496 * 109.47285 * 84.21477 * 21 19 17 23 23 H 1.48500 * 109.46964 * 204.21362 * 21 19 17 24 24 H 1.48498 * 109.46973 * 324.21608 * 21 19 17 25 25 C 1.47022 * 125.65122 * 5.84020 * 12 10 9 26 26 H 1.09006 * 109.46509 * 59.99832 * 1 2 3 27 27 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47478 * 300.00361 * 1 2 3 29 29 H 1.09000 * 109.46933 * 269.97587 * 6 5 4 30 30 H 1.09003 * 109.46948 * 29.98178 * 6 5 4 31 31 H 1.09003 * 109.46474 * 149.97871 * 6 5 4 32 32 H 1.08008 * 120.27182 * 180.02562 * 7 5 4 33 33 H 1.08003 * 120.82692 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.36923 * 322.99505 * 13 12 10 35 35 H 1.08995 * 110.36761 * 85.21067 * 13 12 10 36 36 H 1.09000 * 111.18523 * 204.97681 * 14 13 12 37 37 H 1.09000 * 111.02078 * 80.98664 * 14 13 12 38 38 H 0.96701 * 114.00426 * 172.22432 * 16 15 14 39 39 H 0.97007 * 119.99563 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.87895 * 59.49173 * 25 12 10 41 41 H 1.08999 * 110.01111 * 298.40431 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0062 5 6 1.8772 3.5084 0.0004 6 6 1.0000 4.7339 0.0006 7 6 3.2527 3.6574 -0.0055 8 6 4.0588 2.5332 -0.0058 9 6 3.4450 1.2751 -0.0006 10 6 4.2569 0.0434 -0.0013 11 8 3.7184 -1.0398 0.1219 12 7 5.5956 0.1189 -0.1383 13 6 6.5111 -1.0284 -0.2766 14 6 7.8871 -0.5024 0.2178 15 6 7.8673 0.9544 -0.3156 16 8 8.2742 0.9971 -1.6849 17 6 8.7454 1.8429 0.5273 18 1 8.3278 2.3692 1.3729 19 6 10.0818 1.9839 0.2191 20 7 10.8168 2.8620 0.8659 21 14 10.8486 0.9276 -1.1173 22 1 10.6064 1.5528 -2.4423 23 1 12.3107 0.8164 -0.8824 24 1 10.2383 -0.4258 -1.0896 25 6 6.3848 1.3588 -0.1737 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7845 5.0266 -1.0270 30 1 0.0670 4.5127 0.5189 31 1 1.5145 5.5486 0.5103 32 1 3.6935 4.6434 -0.0099 33 1 5.1350 2.6238 -0.0100 34 1 6.1766 -1.8580 0.3462 35 1 6.5747 -1.3393 -1.3194 36 1 8.7071 -1.0690 -0.2234 37 1 7.9440 -0.5192 1.3062 38 1 8.1663 1.8635 -2.1005 39 1 11.7572 2.9609 0.6493 40 1 6.2397 1.9171 0.7511 41 1 6.0836 1.9684 -1.0256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:21 Heat of formation + Delta-G solvation = -78.508373 kcal Electronic energy + Delta-G solvation = -25815.980926 eV Core-core repulsion = 22082.623962 eV Total energy + Delta-G solvation = -3733.356964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.16912 -40.82289 -39.17096 -39.00972 -36.34035 -34.48208 -34.40777 -32.81013 -31.82562 -30.15318 -29.43458 -27.92761 -27.13963 -24.79480 -24.06464 -23.19180 -21.64635 -21.13950 -19.61130 -19.11764 -18.33689 -17.85250 -17.30663 -17.16110 -16.90103 -16.57177 -16.26101 -15.70055 -15.24375 -15.19524 -15.07314 -14.73659 -14.59887 -14.22155 -14.02639 -13.92072 -13.50173 -13.31563 -13.29379 -13.15175 -12.98259 -12.78128 -12.69991 -12.23295 -12.12280 -12.04208 -11.78163 -11.29100 -11.15911 -10.96800 -10.75448 -10.57523 -10.27981 -9.78912 -9.43143 -8.31112 -6.44236 -0.41214 0.18683 1.53858 1.57613 1.74003 1.75270 1.87159 2.06272 2.47456 2.69203 2.99773 3.05885 3.45926 3.53141 3.65140 3.85050 3.90543 3.99991 4.18107 4.27236 4.30769 4.36059 4.37386 4.37708 4.59324 4.66001 4.68696 4.71206 4.81214 4.91616 4.93200 5.00409 5.11046 5.15409 5.21765 5.38686 5.45519 5.52178 6.09273 6.16609 6.42818 6.62966 6.69574 7.01366 7.06730 7.34849 8.81020 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.004272 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.550785 B = 6552.674268 C = 7565.746983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.301 6.301 3 C 0.359 3.641 4 N -0.555 5.555 5 C 0.186 3.814 6 C -0.104 4.104 7 C -0.212 4.212 8 C -0.041 4.041 9 C -0.239 4.239 10 C 0.573 3.427 11 O -0.567 6.567 12 N -0.609 5.609 13 C 0.113 3.887 14 C -0.122 4.122 15 C 0.217 3.783 16 O -0.564 6.564 17 C -0.546 4.546 18 H 0.054 0.946 19 C 0.035 3.965 20 N -0.932 5.932 21 Si 0.994 3.006 22 H -0.277 1.277 23 H -0.339 1.339 24 H -0.261 1.261 25 C 0.082 3.918 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.386 0.614 39 H 0.267 0.733 40 H 0.085 0.915 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.947 3.334 -4.168 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.206 6.206 3 C 0.179 3.821 4 N -0.281 5.281 5 C 0.048 3.952 6 C -0.161 4.161 7 C -0.232 4.232 8 C -0.065 4.065 9 C -0.245 4.245 10 C 0.364 3.636 11 O -0.448 6.448 12 N -0.342 5.342 13 C -0.009 4.009 14 C -0.160 4.160 15 C 0.177 3.823 16 O -0.373 6.373 17 C -0.584 4.584 18 H 0.072 0.928 19 C -0.166 4.166 20 N -0.569 5.569 21 Si 0.827 3.173 22 H -0.204 1.204 23 H -0.272 1.272 24 H -0.186 1.186 25 C -0.040 4.040 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.196 0.804 33 H 0.201 0.799 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.236 0.764 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.862 1.845 -3.941 19.357 hybrid contribution 1.333 0.179 -0.302 1.378 sum -17.529 2.024 -4.243 18.148 Atomic orbital electron populations 1.23134 0.75896 1.04523 1.02641 1.86492 1.24263 1.23886 1.85985 1.19933 0.88159 0.85434 0.88615 1.67353 1.40094 0.98439 1.22192 1.21985 0.93274 0.92353 0.87552 1.20955 0.98823 0.91441 1.04833 1.22230 0.93527 1.00963 1.06440 1.23344 1.04300 0.90129 0.88736 1.19907 0.91508 0.95083 1.18029 1.17840 0.80586 0.88684 0.76526 1.90745 1.71594 1.30437 1.52048 1.48397 1.04967 1.09551 1.71248 1.22333 0.88612 0.88888 1.01116 1.23158 0.95479 0.96356 1.01038 1.19991 0.89230 0.93268 0.79837 1.86107 1.86140 1.38655 1.26410 1.21367 0.94355 1.28306 1.14326 0.92826 1.25713 0.97653 0.95029 0.98229 1.70068 1.08115 1.35054 1.43707 0.84992 0.72625 0.80723 0.78914 1.20363 1.27188 1.18599 1.23289 0.92165 0.86379 1.02202 0.91756 0.86697 0.91881 0.88198 0.90132 0.87593 0.80410 0.79938 0.90958 0.91069 0.89920 0.90209 0.76376 0.92452 0.89769 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.38 113.37 1.18 1.91 16 2 O -0.30 -10.02 8.60 -66.47 -0.57 -10.59 16 3 C 0.36 11.57 7.50 85.13 0.64 12.21 16 4 N -0.55 -14.83 9.11 -296.05 -2.70 -17.53 16 5 C 0.19 3.88 6.78 42.58 0.29 4.17 16 6 C -0.10 -1.20 10.16 71.24 0.72 -0.47 16 7 C -0.21 -4.35 9.71 22.32 0.22 -4.13 16 8 C -0.04 -1.08 8.70 22.72 0.20 -0.89 16 9 C -0.24 -7.94 5.90 -19.91 -0.12 -8.06 16 10 C 0.57 22.03 7.80 86.69 0.68 22.70 16 11 O -0.57 -25.12 15.45 16.70 0.26 -24.86 16 12 N -0.61 -21.95 3.33 -818.21 -2.72 -24.68 16 13 C 0.11 4.01 6.94 87.02 0.60 4.61 16 14 C -0.12 -4.67 5.90 32.15 0.19 -4.48 16 15 C 0.22 8.58 0.67 -10.35 -0.01 8.57 16 16 O -0.56 -21.15 8.80 -148.98 -1.31 -22.46 16 17 C -0.55 -26.64 8.81 25.60 0.23 -26.41 16 18 H 0.05 2.88 7.80 -2.91 -0.02 2.86 16 19 C 0.03 1.80 5.46 84.65 0.46 2.26 16 20 N -0.93 -53.23 13.96 21.45 0.30 -52.93 16 21 Si 0.99 44.92 24.82 68.60 1.70 46.63 16 22 H -0.28 -11.88 7.10 99.48 0.71 -11.17 16 23 H -0.34 -16.16 7.11 99.48 0.71 -15.46 16 24 H -0.26 -11.34 5.28 99.48 0.52 -10.82 16 25 C 0.08 2.75 4.21 86.73 0.36 3.11 16 26 H 0.06 1.31 8.11 -2.38 -0.02 1.29 16 27 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.75 8.07 -2.39 -0.02 0.73 16 32 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.18 4.71 2.90 -4.32 -0.01 4.69 16 34 H 0.07 2.54 7.98 -2.39 -0.02 2.52 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.08 3.21 6.21 -2.39 -0.01 3.19 16 37 H 0.08 3.12 8.04 -2.39 -0.02 3.10 16 38 H 0.39 12.05 9.00 -74.06 -0.67 11.38 16 39 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 40 H 0.08 2.84 6.29 -2.39 -0.02 2.83 16 41 H 0.09 2.70 6.56 -2.39 -0.02 2.68 16 Total: -1.00 -70.66 330.49 0.82 -69.84 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.22 Total: 21.48 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.64 Total: 15.10 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -5.12 Total: -95.13 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.63 Total: -57.91 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.70 Total: 46.63 kcal Total: -70.66 0.82 -69.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.667 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds