Wall clock time and date at job start Fri Apr 10 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47149 * 2 1 4 4 H 1.08998 * 109.47291 * 302.38988 * 3 2 1 5 5 C 1.50708 * 109.47121 * 182.39311 * 3 2 1 6 6 H 1.07994 * 119.99629 * 245.41131 * 5 3 2 7 7 C 1.37873 * 119.99977 * 65.40787 * 5 3 2 8 8 N 1.31516 * 120.00089 * 190.92150 * 7 5 3 9 9 Si 1.86802 * 120.00018 * 10.91910 * 7 5 3 10 10 H 1.48505 * 109.47157 * 88.94656 * 9 7 5 11 11 H 1.48491 * 109.47408 * 208.94480 * 9 7 5 12 12 H 1.48496 * 109.47208 * 328.94875 * 9 7 5 13 13 N 1.46499 * 109.47151 * 62.39254 * 3 2 1 14 14 S 1.65603 * 120.00098 * 215.10873 * 13 3 2 15 15 O 1.42099 * 106.40073 * 178.55459 * 14 13 3 16 16 O 1.42098 * 106.40618 * 311.47747 * 14 13 3 17 17 N 1.65607 * 107.21240 * 65.01577 * 14 13 3 18 18 C 1.46924 * 120.63007 * 272.39368 * 17 14 13 19 19 C 1.52763 * 109.00984 * 233.58492 * 18 17 14 20 20 C 1.53041 * 109.38266 * 305.59230 * 19 18 17 21 21 O 1.42903 * 109.44659 * 181.25317 * 20 19 18 22 22 C 1.42895 * 114.00062 * 89.93842 * 21 20 19 23 23 C 1.53040 * 109.53725 * 61.23978 * 20 19 18 24 24 C 1.46927 * 120.62733 * 92.68217 * 17 14 13 25 25 H 1.09000 * 109.47065 * 304.45131 * 1 2 3 26 26 H 1.09002 * 109.46875 * 64.44629 * 1 2 3 27 27 H 1.08996 * 109.47049 * 184.44278 * 1 2 3 28 28 H 1.08996 * 109.47008 * 239.99712 * 2 1 3 29 29 H 1.09001 * 109.46951 * 120.00369 * 2 1 3 30 30 H 0.97002 * 119.99620 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00148 * 35.11795 * 13 3 2 32 32 H 1.08999 * 109.58562 * 353.42395 * 18 17 14 33 33 H 1.09005 * 109.58285 * 113.84518 * 18 17 14 34 34 H 1.08997 * 109.56489 * 185.55327 * 19 18 17 35 35 H 1.09007 * 109.35431 * 65.50191 * 19 18 17 36 36 H 1.09002 * 109.45936 * 301.21532 * 20 19 18 37 37 H 1.08999 * 109.47460 * 59.99641 * 22 21 20 38 38 H 1.09003 * 109.47177 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.47184 * 300.00013 * 22 21 20 40 40 H 1.09003 * 109.49155 * 178.67957 * 23 20 19 41 41 H 1.08997 * 109.52857 * 58.60356 * 23 20 19 42 42 H 1.09010 * 109.58171 * 246.15111 * 24 17 14 43 43 H 1.08992 * 109.59259 * 6.43290 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6422 1.9685 -0.8678 5 6 3.5459 1.4428 -0.0593 6 1 4.1190 1.8203 0.7746 7 6 4.1919 0.9613 -1.1781 8 7 5.4913 0.7600 -1.1517 9 14 3.2214 0.5946 -2.7316 10 1 3.1547 1.8162 -3.5735 11 1 3.8918 -0.4924 -3.4891 12 1 1.8463 0.1689 -2.3673 13 7 1.5994 2.1162 1.2239 14 16 1.2007 3.7231 1.1870 15 8 0.7876 4.0644 2.5030 16 8 2.2604 4.3840 0.5090 17 7 -0.1373 3.8740 0.2228 18 6 0.0024 4.0516 -1.2289 19 6 -0.7770 5.2942 -1.6555 20 6 -2.2244 5.1766 -1.1726 21 8 -2.9621 6.3249 -1.5960 22 6 -3.5805 6.1790 -2.8760 23 6 -2.2488 5.0899 0.3552 24 6 -1.4863 3.8393 0.8039 25 1 -0.3633 0.5814 0.8474 26 1 -0.3633 0.4433 -0.9272 27 1 -0.3633 -1.0245 0.0796 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.9457 0.4216 -1.9390 31 1 1.5412 1.6211 2.0561 32 1 1.0551 4.1773 -1.4821 33 1 -0.3976 3.1781 -1.7440 34 1 -0.7618 5.3795 -2.7420 35 1 -0.3169 6.1784 -1.2142 36 1 -2.6762 4.2789 -1.5946 37 1 -4.2770 5.3410 -2.8496 38 1 -4.1200 7.0928 -3.1251 39 1 -2.8157 5.9920 -3.6298 40 1 -3.2812 5.0297 0.6997 41 1 -1.7753 5.9759 0.7780 42 1 -2.0102 2.9481 0.4580 43 1 -1.4155 3.8225 1.8914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594768065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:46 Heat of formation + Delta-G solvation = -124.206482 kcal Electronic energy + Delta-G solvation = -25468.484324 eV Core-core repulsion = 21868.589693 eV Total energy + Delta-G solvation = -3599.894631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.26178 -36.84277 -36.76680 -36.17863 -35.23026 -32.20381 -31.50601 -31.17948 -31.00879 -27.22803 -26.91498 -23.80344 -23.43094 -22.77803 -20.66497 -20.48616 -19.04630 -17.68267 -17.24204 -16.69784 -16.39338 -15.84392 -15.35191 -15.22579 -15.05024 -14.60646 -14.34027 -13.86916 -13.56036 -13.38522 -13.12551 -12.83805 -12.80241 -12.44834 -12.26820 -12.01149 -11.72298 -11.63566 -11.59167 -11.45093 -11.34989 -11.12037 -10.99456 -10.94068 -10.85801 -10.72765 -10.55656 -10.10986 -9.80366 -9.65640 -9.37132 -8.99248 -8.60510 -8.32191 -6.13672 -4.11091 1.12578 3.19142 3.24097 3.30874 3.35080 3.57769 4.08898 4.33129 4.58270 4.66787 4.86303 4.93740 5.09851 5.11560 5.14805 5.17226 5.21815 5.29086 5.39244 5.48129 5.57981 5.64557 5.73204 5.79230 5.80121 5.84331 5.94050 6.02742 6.13348 6.18503 6.25039 6.44185 6.47453 6.62469 6.73745 6.98479 7.03447 7.20961 7.55849 7.83643 8.46372 8.96889 9.47544 10.99988 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.005569 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.791854 B = 5026.597114 C = 5616.805928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.260 3.740 4 H 0.030 0.970 5 C -0.527 4.527 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.850 3.150 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.245 1.245 13 N -1.105 6.105 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.960 6.960 17 N -1.009 6.009 18 C 0.120 3.880 19 C -0.153 4.153 20 C 0.091 3.909 21 O -0.387 6.387 22 C 0.031 3.969 23 C -0.127 4.127 24 C 0.124 3.876 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.643 4.304 -1.781 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.154 3.846 4 H 0.048 0.952 5 C -0.566 4.566 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.677 3.323 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.169 1.169 13 N -0.866 5.866 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.943 6.943 17 N -0.849 5.849 18 C -0.006 4.006 19 C -0.192 4.192 20 C 0.034 3.966 21 O -0.305 6.305 22 C -0.066 4.066 23 C -0.166 4.166 24 C -0.002 4.002 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.000 5.214 -1.512 18.801 hybrid contribution -0.522 -1.001 -1.116 1.587 sum -18.523 4.214 -2.627 19.177 Atomic orbital electron populations 1.21839 0.97997 1.00167 1.00809 1.22334 0.93273 0.99380 1.02636 1.18721 0.95471 0.89368 0.81076 0.95245 1.21321 0.88929 1.42029 1.04295 0.90136 1.24880 0.94729 0.94602 0.98348 1.69924 1.08637 1.44554 1.29559 0.87500 0.81807 0.78641 0.84383 1.20141 1.21105 1.16949 1.55649 1.82241 1.30419 1.18309 1.01911 0.72880 0.73725 0.72433 1.93539 1.83293 1.83504 1.37943 1.93643 1.52131 1.73318 1.75239 1.58309 1.20525 1.88366 1.17659 1.21335 1.02431 0.97111 0.79731 1.22306 0.95791 0.99680 1.01429 1.22105 0.91228 0.88101 0.95183 1.87913 1.68490 1.38990 1.35156 1.22765 0.96620 1.01863 0.85305 1.21931 1.01170 0.99449 0.94074 1.21337 0.82280 0.97294 0.99290 0.93172 0.93782 0.93968 0.91038 0.91893 0.92543 0.76072 0.88037 0.91499 0.90727 0.90382 0.91983 0.94183 0.89860 0.94021 0.90296 0.90499 0.91471 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.84 37.16 0.37 -1.89 16 2 C -0.14 -2.59 4.86 -26.73 -0.13 -2.72 16 3 C 0.26 5.55 1.77 -69.08 -0.12 5.43 16 4 H 0.03 0.63 5.75 -51.93 -0.30 0.33 16 5 C -0.53 -14.25 9.30 -34.44 -0.32 -14.57 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.08 2.15 5.39 -17.82 -0.10 2.06 16 8 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 9 Si 0.85 19.61 25.85 -169.99 -4.39 15.21 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.25 -4.99 5.14 56.52 0.29 -4.70 16 13 N -1.11 -20.77 4.77 -5.88 -0.03 -20.80 16 14 S 2.78 52.07 6.09 -107.50 -0.65 51.42 16 15 O -1.00 -19.52 16.66 -57.17 -0.95 -20.47 16 16 O -0.96 -22.07 16.55 -57.17 -0.95 -23.02 16 17 N -1.01 -14.80 3.35 -113.77 -0.38 -15.18 16 18 C 0.12 1.67 5.48 -3.93 -0.02 1.65 16 19 C -0.15 -1.85 5.68 -26.83 -0.15 -2.00 16 20 C 0.09 1.00 2.57 -26.69 -0.07 0.93 16 21 O -0.39 -4.42 10.35 -35.23 -0.36 -4.79 16 22 C 0.03 0.26 10.82 101.05 1.09 1.35 16 23 C -0.13 -1.38 5.73 -26.61 -0.15 -1.53 16 24 C 0.12 1.44 6.49 -3.71 -0.02 1.41 16 25 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.44 4.45 -51.93 -0.23 1.21 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.41 6.79 8.84 -34.47 -0.30 6.49 16 32 H 0.10 1.64 6.93 -51.93 -0.36 1.28 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 35 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.06 0.60 7.79 -51.93 -0.40 0.19 16 37 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.32 7.84 -51.93 -0.41 -0.08 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 43 H 0.10 1.15 6.86 -51.93 -0.36 0.79 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -33.48 346.42 -8.41 -41.89 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.05 Total: 6.21 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 0.37 Total: -9.89 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.36 Total: -61.79 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.26 Total: -48.28 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.39 Total: 15.21 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.65 Total: 51.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.48 -8.41 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594768065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.313 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds