Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46864 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47138 * 59.99890 * 16 15 14 18 18 O 1.42898 * 109.47391 * 299.99868 * 16 15 14 19 19 C 1.50699 * 109.46839 * 179.97438 * 16 15 14 20 20 N 1.34775 * 120.00414 * 295.00090 * 19 16 15 21 21 O 1.21283 * 119.99636 * 115.00420 * 19 16 15 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 33 33 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 34 34 H 0.96705 * 113.99248 * 300.00367 * 18 16 15 35 35 H 0.96996 * 119.99779 * 359.97438 * 20 19 16 36 36 H 0.96998 * 119.99860 * 180.02562 * 20 19 16 37 37 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 38 38 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 39 39 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 40 40 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 41 41 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5855 -4.5846 4.9115 17 1 5.5006 -4.6558 4.3235 18 8 3.9263 -5.8524 4.9222 19 6 4.9263 -4.1832 6.3235 20 7 5.6448 -3.0660 6.5518 21 8 4.5540 -4.8656 7.2545 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 4.1640 -2.5672 4.2836 33 1 2.7465 -3.4636 4.8799 34 1 3.1023 -5.8629 5.4282 35 1 5.9428 -2.5205 5.8072 36 1 5.8644 -2.8079 7.4607 37 1 2.7574 -2.8893 -2.0718 38 1 2.0097 -3.6688 -4.2846 39 1 -0.3693 -4.1709 -4.6739 40 1 -1.9993 -3.9013 -2.8481 41 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597586791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -112.897580 kcal Electronic energy + Delta-G solvation = -24729.356056 eV Core-core repulsion = 20994.507865 eV Total energy + Delta-G solvation = -3734.848192 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31207 -39.16863 -38.32504 -36.85097 -34.60373 -34.20299 -33.64925 -31.39225 -30.13150 -29.90188 -28.60930 -25.42262 -23.95638 -22.73131 -21.68163 -21.23078 -20.31052 -19.54320 -18.40134 -17.42365 -17.19141 -16.61870 -16.16961 -15.96940 -15.61107 -15.09780 -14.92249 -14.35681 -14.25099 -13.99506 -13.95780 -13.68396 -13.11255 -12.98576 -12.61027 -12.38701 -12.23899 -12.07907 -11.87591 -11.48957 -11.11800 -10.94370 -10.75358 -10.45391 -10.17772 -10.08812 -10.07645 -10.05970 -9.71381 -9.13116 -8.79483 -8.64404 -8.31374 -8.15466 -7.65985 -6.25064 -3.94381 2.13917 2.17494 2.23121 3.00056 3.37016 3.46782 3.49956 3.51271 3.67802 4.07215 4.36810 4.54000 4.58585 4.65616 4.66369 5.32696 5.45460 5.50957 5.58408 5.61798 5.73552 5.75779 5.97403 6.04662 6.14691 6.30075 6.37382 6.40123 6.63580 6.68652 6.76959 6.85436 6.90924 7.18441 7.20164 7.21079 7.35904 7.70335 7.81753 7.83992 7.91847 8.19588 8.48312 8.89622 8.94871 9.74739 11.14318 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003799 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.125874 B = 7368.468704 C = 8780.543415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.032 3.968 3 Si 1.060 2.940 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.568 4.568 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.049 0.951 11 C -0.115 4.115 12 C 0.514 3.486 13 O -0.498 6.498 14 N -0.743 5.743 15 C 0.097 3.903 16 C 0.081 3.919 17 H 0.132 0.868 18 O -0.534 6.534 19 C 0.495 3.505 20 N -0.849 5.849 21 O -0.535 6.535 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.271 0.729 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.399 0.601 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.387 0.613 35 H 0.406 0.594 36 H 0.403 0.597 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -9.083 4.432 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.890 3.110 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.605 4.605 8 H 0.063 0.937 9 C 0.053 3.947 10 H 0.068 0.932 11 C -0.156 4.156 12 C 0.301 3.699 13 O -0.369 6.369 14 N -0.400 5.400 15 C -0.029 4.029 16 C 0.018 3.982 17 H 0.149 0.851 18 O -0.339 6.339 19 C 0.279 3.721 20 N -0.414 5.414 21 O -0.411 6.411 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.235 0.765 36 H 0.234 0.766 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.887 -7.385 4.950 12.570 hybrid contribution 0.277 -1.292 0.029 1.322 sum 9.164 -8.677 4.979 13.567 Atomic orbital electron populations 1.70730 1.06959 1.31051 1.45349 1.25572 0.96400 1.02201 0.93219 0.83682 0.75120 0.76075 0.76167 1.20943 1.21595 1.21721 1.21519 0.93698 0.90665 1.54636 0.93683 1.17871 0.95627 0.92944 0.88244 0.93249 1.21658 1.01877 1.00077 0.91938 1.20928 0.77622 0.83313 0.88070 1.90762 1.50531 1.23285 1.72353 1.46038 1.53390 1.27590 1.13024 1.21736 0.99056 0.96992 0.85086 1.22112 0.97981 0.85723 0.92383 0.85084 1.86581 1.42158 1.29437 1.75720 1.21398 0.77692 0.80688 0.92362 1.43918 1.57430 1.27108 1.12965 1.90777 1.52962 1.52373 1.45014 1.20836 0.92504 0.91247 0.98790 1.20923 0.99905 0.99149 0.92473 1.21019 0.95592 1.01148 0.97071 1.20830 0.93760 1.04063 0.98360 1.20970 0.98535 1.00987 0.93792 1.21077 0.96162 1.00748 0.96841 0.91750 0.91455 0.90133 0.76624 0.90399 0.91063 0.76304 0.76540 0.76553 0.86678 0.87440 0.87574 0.87439 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 13.56 55.43 0.75 -26.55 16 2 C 0.03 0.90 5.45 -17.83 -0.10 0.80 16 3 Si 1.06 25.61 29.91 -169.99 -5.08 20.53 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.57 -15.01 6.35 -34.44 -0.22 -15.23 16 8 H 0.04 1.19 7.82 -52.48 -0.41 0.78 16 9 C 0.07 1.68 1.23 -92.92 -0.11 1.57 16 10 H 0.05 1.31 6.59 -51.93 -0.34 0.97 16 11 C -0.12 -2.14 4.95 -27.88 -0.14 -2.27 16 12 C 0.51 9.60 7.58 -10.99 -0.08 9.51 16 13 O -0.50 -11.85 15.02 5.55 0.08 -11.76 16 14 N -0.74 -9.84 5.45 -60.29 -0.33 -10.17 16 15 C 0.10 1.10 5.29 -4.04 -0.02 1.08 16 16 C 0.08 0.73 3.46 -27.88 -0.10 0.64 16 17 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 18 O -0.53 -5.53 12.74 -55.08 -0.70 -6.23 16 19 C 0.50 4.95 7.44 -10.99 -0.08 4.87 16 20 N -0.85 -5.52 8.84 31.22 0.28 -5.25 16 21 O -0.54 -7.55 17.16 -14.30 -0.25 -7.79 16 22 C -0.03 -0.72 4.53 -104.62 -0.47 -1.19 16 23 C -0.11 -2.13 8.90 -39.58 -0.35 -2.48 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16 26 C -0.12 -2.26 10.05 -39.58 -0.40 -2.66 16 27 C -0.13 -2.68 9.18 -39.58 -0.36 -3.04 16 28 H 0.27 8.06 6.24 -40.82 -0.25 7.80 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.38 7.97 -51.93 -0.41 0.96 16 31 H 0.40 4.30 8.35 -40.82 -0.34 3.96 16 32 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.39 3.48 8.79 45.56 0.40 3.88 16 35 H 0.41 1.73 8.61 -40.82 -0.35 1.38 16 36 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 37 H 0.12 2.23 7.85 -52.48 -0.41 1.82 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 2.24 7.95 -52.49 -0.42 1.82 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -36.52 354.12 -7.80 -44.32 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -4.65 Total: 11.68 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.23 Total: -14.10 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.70 Total: -41.97 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.86 Total: -25.79 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.52 -7.80 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597586791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.582 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds