Wall clock time and date at job start Fri Apr 10 2020 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46864 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47138 * 59.99890 * 16 15 14 18 18 O 1.42898 * 109.47391 * 299.99868 * 16 15 14 19 19 C 1.50699 * 109.46839 * 179.97438 * 16 15 14 20 20 N 1.34775 * 120.00414 * 295.00090 * 19 16 15 21 21 O 1.21283 * 119.99636 * 115.00420 * 19 16 15 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 33 33 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 34 34 H 0.96705 * 113.99248 * 300.00367 * 18 16 15 35 35 H 0.96996 * 119.99779 * 359.97438 * 20 19 16 36 36 H 0.96998 * 119.99860 * 180.02562 * 20 19 16 37 37 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 38 38 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 39 39 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 40 40 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 41 41 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5855 -4.5846 4.9115 17 1 5.5006 -4.6558 4.3235 18 8 3.9263 -5.8524 4.9222 19 6 4.9263 -4.1832 6.3235 20 7 5.6448 -3.0660 6.5518 21 8 4.5540 -4.8656 7.2545 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 4.1640 -2.5672 4.2836 33 1 2.7465 -3.4636 4.8799 34 1 3.1023 -5.8629 5.4282 35 1 5.9428 -2.5205 5.8072 36 1 5.8644 -2.8079 7.4607 37 1 2.7574 -2.8893 -2.0718 38 1 2.0097 -3.6688 -4.2846 39 1 -0.3693 -4.1709 -4.6739 40 1 -1.9993 -3.9013 -2.8481 41 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597586791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:52 Heat of formation + Delta-G solvation = -142.765261 kcal Electronic energy + Delta-G solvation = -24730.651216 eV Core-core repulsion = 20994.507865 eV Total energy + Delta-G solvation = -3736.143351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24115 -40.58170 -39.77484 -37.78576 -36.14982 -35.37133 -34.69065 -33.26801 -31.59749 -31.10160 -29.88790 -27.08702 -25.35872 -24.21587 -23.17358 -22.10553 -21.72916 -21.03599 -19.18961 -18.86888 -18.19412 -18.11680 -17.47172 -16.97026 -16.80872 -16.34200 -16.19781 -15.67474 -15.62932 -15.54344 -15.24294 -14.88604 -14.60973 -14.45810 -14.03359 -13.96472 -13.57568 -13.43019 -13.12727 -13.01692 -12.61331 -12.58516 -12.05889 -11.95772 -11.94011 -11.70410 -11.48749 -11.04235 -10.78612 -10.70430 -10.54938 -10.33591 -10.04164 -9.62907 -9.25472 -8.41535 -6.08841 0.69045 0.75034 1.32741 1.50646 1.60480 1.76315 1.88665 2.12911 2.54987 2.65095 3.12129 3.25621 3.39346 3.50719 3.84461 3.90896 4.13625 4.15161 4.29562 4.31905 4.45816 4.50903 4.53721 4.64672 4.67676 4.84951 4.89063 5.11468 5.25229 5.42084 5.44413 5.49532 5.76011 5.76621 5.83605 5.96799 6.21584 6.25918 6.32978 6.42835 6.47050 6.69042 6.80312 7.15449 7.50300 7.67235 8.98583 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003799 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.125874 B = 7368.468704 C = 8780.543415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.027 4.027 3 Si 1.097 2.903 4 H -0.293 1.293 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.554 4.554 8 H 0.043 0.957 9 C 0.073 3.927 10 H 0.003 0.997 11 C -0.111 4.111 12 C 0.513 3.487 13 O -0.559 6.559 14 N -0.718 5.718 15 C 0.097 3.903 16 C 0.096 3.904 17 H 0.162 0.838 18 O -0.544 6.544 19 C 0.495 3.505 20 N -0.830 5.830 21 O -0.581 6.581 22 C -0.056 4.056 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.154 4.154 28 H 0.260 0.740 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.416 0.584 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.392 0.608 35 H 0.419 0.581 36 H 0.410 0.590 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 -10.347 2.609 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.225 4.225 3 Si 0.922 3.078 4 H -0.219 1.219 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.061 0.939 9 C 0.054 3.946 10 H 0.021 0.979 11 C -0.151 4.151 12 C 0.301 3.699 13 O -0.436 6.436 14 N -0.375 5.375 15 C -0.028 4.028 16 C 0.033 3.967 17 H 0.179 0.821 18 O -0.350 6.350 19 C 0.278 3.722 20 N -0.395 5.395 21 O -0.461 6.461 22 C -0.056 4.056 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.172 4.172 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.251 0.749 36 H 0.242 0.758 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.079 -8.684 3.114 14.417 hybrid contribution -0.357 -1.010 0.580 1.218 sum 10.722 -9.694 3.695 14.919 Atomic orbital electron populations 1.70818 1.08060 1.30444 1.49127 1.26749 0.96541 1.05697 0.93483 0.83205 0.74416 0.72847 0.77347 1.21888 1.20725 1.19223 1.21791 0.93571 0.91936 1.51945 0.93851 1.17709 0.94480 0.93415 0.89027 0.97899 1.21563 1.01913 0.99582 0.92058 1.20956 0.77674 0.82894 0.88383 1.90746 1.53175 1.26101 1.73531 1.45707 1.51328 1.27080 1.13338 1.21829 0.99086 0.98297 0.83598 1.22099 0.98151 0.84380 0.92042 0.82131 1.86559 1.42589 1.29996 1.75820 1.21519 0.77585 0.80971 0.92111 1.43804 1.55779 1.25894 1.14052 1.90765 1.55065 1.54050 1.46190 1.20642 0.93431 0.93374 0.98172 1.21026 0.99680 1.00051 0.93183 1.21418 0.96738 0.99337 0.96810 1.21305 0.93246 1.02237 0.99499 1.21296 1.00351 0.99919 0.92870 1.21134 0.95732 1.02361 0.98005 0.92980 0.89114 0.88137 0.74674 0.89764 0.92682 0.75814 0.74937 0.75756 0.86530 0.83932 0.83666 0.84856 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.56 21.44 0.29 -59.40 16 2 C -0.03 -1.54 5.45 84.65 0.46 -1.08 16 3 Si 1.10 52.36 29.91 68.60 2.05 54.41 16 4 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.55 -29.93 6.35 25.60 0.16 -29.76 16 8 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 9 C 0.07 3.51 1.23 -12.28 -0.02 3.49 16 10 H 0.00 0.16 6.59 -2.39 -0.02 0.14 16 11 C -0.11 -4.10 4.95 29.85 0.15 -3.95 16 12 C 0.51 19.23 7.58 87.66 0.66 19.89 16 13 O -0.56 -27.53 15.02 -3.04 -0.05 -27.58 16 14 N -0.72 -18.06 5.45 -463.05 -2.52 -20.58 16 15 C 0.10 2.09 5.29 86.38 0.46 2.55 16 16 C 0.10 1.54 3.46 29.85 0.10 1.65 16 17 H 0.16 1.65 8.14 -2.38 -0.02 1.63 16 18 O -0.54 -10.42 12.74 -130.00 -1.66 -12.08 16 19 C 0.49 9.23 7.44 87.66 0.65 9.88 16 20 N -0.83 -9.28 8.84 -173.53 -1.53 -10.82 16 21 O -0.58 -16.14 17.16 15.94 0.27 -15.87 16 22 C -0.06 -2.44 4.53 -19.87 -0.09 -2.53 16 23 C -0.12 -4.68 8.90 22.27 0.20 -4.48 16 24 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 25 C -0.15 -4.43 10.05 22.27 0.22 -4.21 16 26 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.46 9.18 22.27 0.20 -6.26 16 28 H 0.26 16.43 6.24 -92.70 -0.58 15.85 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.10 3.28 7.97 -2.39 -0.02 3.26 16 31 H 0.42 7.91 8.35 -92.71 -0.77 7.14 16 32 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.39 6.81 8.79 -74.05 -0.65 6.16 16 35 H 0.42 2.56 8.61 -92.71 -0.80 1.76 16 36 H 0.41 3.92 8.93 -92.71 -0.83 3.09 16 37 H 0.12 4.35 7.85 -2.91 -0.02 4.32 16 38 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.09 4.12 7.95 -2.91 -0.02 4.09 16 Total: -1.00 -83.61 354.12 -1.28 -84.89 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -1.76 Total: 29.73 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.62 Total: -22.72 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.77 Total: -90.79 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.43 Total: -55.52 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -83.61 -1.28 -84.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597586791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.872 kcal (2) G-P(sol) polarization free energy of solvation -83.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds