Wall clock time and date at job start Fri Apr 10 2020 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99559 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46864 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.47028 * 304.99625 * 16 15 14 18 18 O 1.42897 * 109.46969 * 64.99796 * 16 15 14 19 19 C 1.50698 * 109.47167 * 184.99709 * 16 15 14 20 20 N 1.34773 * 120.00009 * 64.99591 * 19 16 15 21 21 O 1.21283 * 120.00230 * 245.00501 * 19 16 15 22 22 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 23 23 C 1.38237 * 120.00118 * 54.45011 * 22 9 7 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 9 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 234.71903 * 22 9 7 28 28 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 29 29 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 30 30 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 31 31 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 32 32 H 1.08998 * 109.46870 * 299.99113 * 15 14 12 33 33 H 1.08995 * 109.47556 * 59.99876 * 15 14 12 34 34 H 0.96705 * 114.00571 * 60.00317 * 18 16 15 35 35 H 0.96998 * 120.00119 * 0.02562 * 20 19 16 36 36 H 0.96997 * 120.00179 * 179.97438 * 20 19 16 37 37 H 1.08005 * 119.99967 * 359.97438 * 23 22 9 38 38 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 39 39 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 40 40 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 41 41 H 1.07999 * 120.00249 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 6 3.6614 -3.5344 4.2917 16 6 4.5855 -4.5846 4.9115 17 1 4.1190 -5.5671 4.8392 18 8 5.8310 -4.5959 4.2111 19 6 4.8271 -4.2487 6.3606 20 7 3.8053 -4.2792 7.2388 21 8 5.9411 -3.9508 6.7365 22 6 0.8003 -2.9670 -1.2150 23 6 1.7146 -3.1134 -2.2414 24 6 1.2947 -3.5503 -3.4839 25 6 -0.0409 -3.8321 -3.7025 26 6 -0.9560 -3.6808 -2.6775 27 6 -0.5353 -3.2480 -1.4338 28 1 -0.4851 -0.8361 -0.0817 29 1 1.6797 -4.5125 0.7692 30 1 3.0976 -3.6172 0.1724 31 1 3.6919 -4.7442 2.5471 32 1 4.1640 -2.5672 4.2836 33 1 2.7465 -3.4636 4.8799 34 1 6.3027 -3.7520 4.2336 35 1 2.9144 -4.5176 6.9383 36 1 3.9608 -4.0633 8.1716 37 1 2.7574 -2.8893 -2.0718 38 1 2.0097 -3.6688 -4.2846 39 1 -0.3693 -4.1709 -4.6739 40 1 -1.9993 -3.9013 -2.8481 41 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597586794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:59 Heat of formation + Delta-G solvation = -142.770375 kcal Electronic energy + Delta-G solvation = -24731.162484 eV Core-core repulsion = 20995.018910 eV Total energy + Delta-G solvation = -3736.143573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24038 -40.58346 -39.77389 -37.77837 -36.15936 -35.39447 -34.69249 -33.27654 -31.59444 -31.09522 -29.87794 -27.09249 -25.36651 -24.22456 -23.16976 -22.11871 -21.72841 -21.03777 -19.19588 -18.88385 -18.23181 -18.06720 -17.47389 -16.92714 -16.82036 -16.53716 -15.87050 -15.79698 -15.65245 -15.60681 -15.21781 -14.89942 -14.57898 -14.49326 -14.03502 -13.95652 -13.57779 -13.43931 -13.13407 -13.01311 -12.64174 -12.59641 -12.06886 -11.95698 -11.94811 -11.70518 -11.48909 -11.04906 -10.78834 -10.70808 -10.55505 -10.34479 -10.04425 -9.62573 -9.25491 -8.42840 -6.09848 0.69390 0.75218 1.32629 1.48716 1.57914 1.73922 1.88094 2.12880 2.56230 2.62381 3.12241 3.23705 3.37613 3.50543 3.85750 3.90330 4.13208 4.15744 4.29881 4.32083 4.45993 4.48633 4.55355 4.62396 4.69887 4.85380 4.89000 5.11804 5.25363 5.42236 5.44486 5.49325 5.76372 5.76591 5.83809 5.96378 6.21512 6.25809 6.32701 6.42334 6.47047 6.68685 6.80423 7.15635 7.50206 7.64847 8.97474 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003735 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.372986 B = 7493.978029 C = 8623.328463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.023 4.023 3 Si 1.094 2.906 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.038 0.962 9 C 0.074 3.926 10 H 0.007 0.993 11 C -0.111 4.111 12 C 0.513 3.487 13 O -0.559 6.559 14 N -0.719 5.719 15 C 0.097 3.903 16 C 0.096 3.904 17 H 0.163 0.837 18 O -0.545 6.545 19 C 0.494 3.506 20 N -0.830 5.830 21 O -0.581 6.581 22 C -0.055 4.055 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.152 4.152 28 H 0.261 0.739 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.416 0.584 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.392 0.608 35 H 0.419 0.581 36 H 0.410 0.590 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -14.739 5.107 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.222 4.222 3 Si 0.919 3.081 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.056 0.944 9 C 0.055 3.945 10 H 0.025 0.975 11 C -0.151 4.151 12 C 0.301 3.699 13 O -0.435 6.435 14 N -0.375 5.375 15 C -0.028 4.028 16 C 0.033 3.967 17 H 0.180 0.820 18 O -0.351 6.351 19 C 0.278 3.722 20 N -0.395 5.395 21 O -0.461 6.461 22 C -0.056 4.056 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.251 0.749 36 H 0.242 0.758 37 H 0.131 0.869 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.626 -12.800 5.456 14.663 hybrid contribution -0.094 -0.884 0.506 1.023 sum 4.531 -13.685 5.961 15.599 Atomic orbital electron populations 1.70815 1.07865 1.30507 1.49020 1.26647 0.96591 1.05429 0.93526 0.83237 0.74466 0.73241 0.77150 1.21483 1.21268 1.19367 1.21796 0.93404 0.92206 1.52023 0.94385 1.17700 0.94532 0.93186 0.89127 0.97454 1.21566 1.01771 0.99840 0.91959 1.20965 0.77740 0.82868 0.88353 1.90746 1.53469 1.25875 1.73458 1.45724 1.50913 1.27219 1.13608 1.21845 0.99410 0.97422 0.84116 1.22110 0.85749 1.02209 0.86614 0.81955 1.86555 1.33418 1.40908 1.74242 1.21523 0.84748 0.76039 0.89914 1.43791 1.12011 1.70934 1.12767 1.90768 1.25175 1.49638 1.80482 1.20628 0.93483 0.93402 0.98076 1.21016 0.99607 1.00156 0.93320 1.21403 0.96807 0.99425 0.96743 1.21303 0.93173 1.02222 0.99559 1.21306 1.00359 0.99845 0.92833 1.21137 0.95609 1.02202 0.98057 0.92813 0.88533 0.88673 0.74693 0.92894 0.89602 0.75804 0.74920 0.75754 0.86892 0.84115 0.83673 0.84699 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.56 21.44 0.29 -59.11 16 2 C -0.02 -1.37 5.45 84.65 0.46 -0.91 16 3 Si 1.09 53.65 29.91 68.60 2.05 55.71 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.56 -30.52 6.35 25.60 0.16 -30.36 16 8 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 9 C 0.07 3.53 1.23 -12.28 -0.02 3.52 16 10 H 0.01 0.40 6.59 -2.39 -0.02 0.39 16 11 C -0.11 -4.09 4.95 29.85 0.15 -3.94 16 12 C 0.51 19.17 7.58 87.66 0.66 19.84 16 13 O -0.56 -27.51 15.02 -3.04 -0.05 -27.55 16 14 N -0.72 -17.97 5.50 -463.05 -2.55 -20.52 16 15 C 0.10 2.10 5.28 86.38 0.46 2.56 16 16 C 0.10 1.55 3.41 29.85 0.10 1.65 16 17 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 18 O -0.55 -10.86 12.94 -129.99 -1.68 -12.55 16 19 C 0.49 9.22 7.44 87.66 0.65 9.87 16 20 N -0.83 -8.96 8.77 -173.54 -1.52 -10.48 16 21 O -0.58 -16.29 17.16 15.95 0.27 -16.02 16 22 C -0.06 -2.41 4.53 -19.87 -0.09 -2.50 16 23 C -0.12 -4.79 8.90 22.27 0.20 -4.59 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.14 -4.39 10.05 22.27 0.22 -4.16 16 26 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 27 C -0.15 -6.23 9.18 22.27 0.20 -6.03 16 28 H 0.26 16.37 6.24 -92.70 -0.58 15.79 16 29 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.10 3.21 7.97 -2.39 -0.02 3.19 16 31 H 0.42 7.77 8.47 -92.71 -0.79 6.98 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.73 7.77 -2.39 -0.02 1.71 16 34 H 0.39 7.24 8.79 -74.05 -0.65 6.59 16 35 H 0.42 2.24 8.53 -92.71 -0.79 1.45 16 36 H 0.41 3.79 8.93 -92.71 -0.83 2.96 16 37 H 0.11 4.34 7.85 -2.91 -0.02 4.32 16 38 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.10 4.12 7.95 -2.91 -0.02 4.10 16 Total: -1.00 -84.13 354.14 -1.33 -85.46 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -1.76 Total: 27.97 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.61 Total: -22.90 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.78 Total: -90.11 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -1.45 Total: -56.12 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 2.05 Total: 55.71 kcal Total: -84.13 -1.33 -85.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597586794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.310 kcal (2) G-P(sol) polarization free energy of solvation -84.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds