Wall clock time and date at job start Fri Apr 10 2020 17:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.47155 * 29.99687 * 3 2 1 6 6 H 1.48492 * 109.47215 * 149.99821 * 3 2 1 7 7 C 1.37874 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00286 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99982 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.86909 * 62.39648 * 9 7 2 11 11 C 1.55139 * 110.99334 * 298.55425 * 9 7 2 12 12 C 1.54316 * 103.01810 * 206.21509 * 11 9 7 13 13 N 1.47446 * 107.23320 * 22.28197 * 12 11 9 14 14 C 1.46900 * 111.00255 * 123.25926 * 13 12 11 15 15 C 1.50702 * 109.46996 * 69.87362 * 14 13 12 16 16 C 1.38187 * 119.54278 * 94.73146 * 15 14 13 17 17 C 1.38953 * 118.91912 * 179.70960 * 16 15 14 18 18 C 1.39318 * 118.56123 * 0.45422 * 17 16 15 19 19 C 1.38397 * 119.04839 * 359.87362 * 18 17 16 20 20 N 1.31904 * 119.53799 * 274.99908 * 15 14 13 21 21 O 1.35948 * 120.72427 * 180.02562 * 18 17 16 22 22 C 1.43259 * 116.56658 * 342.80396 * 21 18 17 23 23 C 1.53462 * 108.36178 * 46.13609 * 22 21 18 24 24 O 1.35633 * 120.39651 * 180.16053 * 17 16 15 25 25 C 1.47843 * 108.56761 * 0.99070 * 13 12 11 26 26 H 0.97001 * 119.99866 * 0.02562 * 1 2 3 27 27 H 0.96702 * 114.00628 * 297.60380 * 10 9 7 28 28 H 1.08999 * 110.70823 * 87.83202 * 11 9 7 29 29 H 1.08996 * 110.85104 * 324.66643 * 11 9 7 30 30 H 1.08997 * 109.89177 * 262.87868 * 12 11 9 31 31 H 1.08994 * 109.89296 * 141.68633 * 12 11 9 32 32 H 1.08991 * 109.47253 * 189.87372 * 14 13 12 33 33 H 1.08999 * 109.46647 * 309.87636 * 14 13 12 34 34 H 1.08007 * 120.53942 * 359.95998 * 16 15 14 35 35 H 1.07996 * 119.72128 * 179.91212 * 19 18 17 36 36 H 1.09001 * 109.70087 * 286.41806 * 22 21 18 37 37 H 1.08993 * 109.67557 * 165.84574 * 22 21 18 38 38 H 1.08998 * 109.69199 * 180.57564 * 23 22 21 39 39 H 1.09002 * 109.72094 * 60.01676 * 23 22 21 40 40 H 1.08998 * 110.37465 * 94.73106 * 25 13 12 41 41 H 1.09003 * 110.37404 * 217.07863 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4603 -2.6304 -1.1835 11 6 0.3741 -2.6346 1.2720 12 6 0.2532 -4.1627 1.4498 13 7 1.3911 -4.7764 0.7408 14 6 2.1849 -5.6167 1.6472 15 6 1.3936 -6.8453 2.0153 16 6 1.5727 -8.0118 1.2965 17 6 0.8409 -9.1386 1.6510 18 6 -0.0543 -9.0441 2.7144 19 6 -0.1817 -7.8375 3.3803 20 7 0.5358 -6.7906 3.0158 21 8 -0.7922 -10.1192 3.0987 22 6 -0.8945 -11.1952 2.1585 23 6 0.5062 -11.4870 1.6035 24 8 0.9955 -10.3002 0.9680 25 6 2.2181 -3.6991 0.1566 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2254 -1.9547 -1.2754 28 1 -0.6067 -2.1862 1.1137 29 1 0.8678 -2.1843 2.1331 30 1 -0.6847 -4.5131 1.0189 31 1 0.2953 -4.4174 2.5087 32 1 3.1085 -5.9146 1.1510 33 1 2.4226 -5.0536 2.5497 34 1 2.2732 -8.0483 0.4752 35 1 -0.8734 -7.7517 4.2052 36 1 -1.5600 -10.9094 1.3439 37 1 -1.2839 -12.0826 2.6573 38 1 0.4517 -12.2974 0.8766 39 1 1.1733 -11.7686 2.4182 40 1 3.0362 -3.4416 0.8292 41 1 2.6062 -4.0034 -0.8155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602696935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:11 Heat of formation + Delta-G solvation = -95.223700 kcal Electronic energy + Delta-G solvation = -25234.739136 eV Core-core repulsion = 21500.657341 eV Total energy + Delta-G solvation = -3734.081795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.55178 -40.49812 -39.51383 -38.40892 -36.52988 -34.15443 -33.22604 -33.03897 -31.02114 -30.01571 -29.70699 -27.58052 -26.18517 -24.93516 -24.61521 -22.17242 -21.37904 -21.34510 -19.74426 -19.05201 -18.79157 -18.30900 -17.03171 -16.85866 -16.73749 -16.37864 -16.17861 -15.88076 -15.70535 -15.53426 -15.43484 -15.12423 -14.55465 -14.35494 -14.14220 -13.88751 -13.65037 -13.26128 -13.06249 -12.86972 -12.77133 -12.69608 -12.47485 -12.22220 -12.16619 -12.06307 -11.73927 -11.62158 -11.08352 -10.65556 -10.56738 -10.08305 -10.05010 -9.44498 -9.14833 -8.18700 -6.34713 -0.01719 0.14688 1.42309 1.43969 1.53397 1.87790 2.13341 2.39872 2.57934 3.05653 3.09708 3.23684 3.43808 3.54518 3.80209 3.91446 3.97034 4.04130 4.10810 4.18510 4.23795 4.38992 4.48567 4.52412 4.55930 4.65258 4.71593 4.74534 4.83218 4.89058 4.97087 5.11366 5.26684 5.31219 5.50712 5.57090 5.72237 5.82195 5.96921 6.18157 6.23328 6.25821 6.71441 6.96139 7.36571 7.47033 8.86599 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.002915 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.709185 B = 9602.284881 C = 9758.539698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.233 3.767 10 O -0.588 6.588 11 C -0.134 4.134 12 C 0.059 3.941 13 N -0.526 5.526 14 C 0.101 3.899 15 C 0.135 3.865 16 C -0.154 4.154 17 C 0.086 3.914 18 C -0.009 4.009 19 C 0.104 3.896 20 N -0.485 5.485 21 O -0.311 6.311 22 C 0.012 3.988 23 C 0.012 3.988 24 O -0.315 6.315 25 C 0.068 3.932 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -23.119 6.151 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.068 4.068 13 N -0.251 5.251 14 C -0.027 4.027 15 C -0.002 4.002 16 C -0.175 4.175 17 C 0.033 3.967 18 C -0.057 4.057 19 C -0.054 4.054 20 N -0.198 5.198 21 O -0.224 6.224 22 C -0.063 4.063 23 C -0.062 4.062 24 O -0.227 6.227 25 C -0.059 4.059 26 H 0.077 0.923 27 H 0.219 0.781 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.096 0.904 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.156 -23.200 6.092 23.987 hybrid contribution 0.078 1.183 0.150 1.195 sum 0.235 -22.017 6.241 22.885 Atomic orbital electron populations 1.69849 1.06934 1.28022 1.50340 1.25727 0.95813 1.02370 0.93338 0.85517 0.78712 0.78957 0.78165 1.20250 1.20766 1.19338 1.21820 0.93612 0.91969 1.52312 0.92381 1.19808 0.87493 0.91549 0.81804 1.86132 1.51362 1.56473 1.45551 1.23057 1.00820 0.94020 0.99434 1.22649 0.93711 0.93396 0.97071 1.63549 1.08919 1.20862 1.31776 1.21151 0.95124 0.90631 0.95828 1.20887 0.94318 0.94177 0.90847 1.21383 1.02301 0.90903 1.02896 1.19140 0.95408 0.88359 0.93815 1.19974 0.95787 0.91014 0.98902 1.22479 0.98290 0.84613 1.00052 1.67569 1.06656 1.29730 1.15836 1.86285 1.67258 1.25818 1.43076 1.24040 0.97430 0.90640 0.94157 1.24106 0.95124 0.85758 1.01211 1.86242 1.78322 1.13924 1.44259 1.22867 0.94790 0.89541 0.98720 0.92328 0.78128 0.92846 0.93693 0.93518 0.91595 0.87336 0.93014 0.82585 0.79938 0.90374 0.82079 0.82366 0.89444 0.92364 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 10.75 21.45 0.23 -49.81 16 2 C 0.03 1.51 5.29 84.65 0.45 1.95 16 3 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.56 -30.46 8.27 25.60 0.21 -30.24 16 8 H 0.06 3.11 7.79 -2.91 -0.02 3.09 16 9 C 0.23 11.96 0.87 -10.16 -0.01 11.95 16 10 O -0.59 -32.10 13.16 -148.98 -1.96 -34.06 16 11 C -0.13 -6.55 5.37 31.77 0.17 -6.38 16 12 C 0.06 2.53 6.31 86.64 0.55 3.08 16 13 N -0.53 -20.97 5.15 -890.12 -4.58 -25.55 16 14 C 0.10 3.24 4.87 85.56 0.42 3.66 16 15 C 0.13 4.16 5.95 42.54 0.25 4.41 16 16 C -0.15 -4.26 9.68 22.43 0.22 -4.04 16 17 C 0.09 2.21 6.52 22.70 0.15 2.36 16 18 C -0.01 -0.22 6.51 22.57 0.15 -0.07 16 19 C 0.10 2.76 11.14 84.70 0.94 3.70 16 20 N -0.48 -15.21 9.06 -183.61 -1.66 -16.87 16 21 O -0.31 -6.25 10.45 -81.01 -0.85 -7.10 16 22 C 0.01 0.14 7.25 72.14 0.52 0.66 16 23 C 0.01 0.14 7.26 72.14 0.52 0.66 16 24 O -0.31 -6.74 10.44 -77.51 -0.81 -7.54 16 25 C 0.07 2.97 5.86 86.77 0.51 3.48 16 26 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.37 20.58 7.56 -74.06 -0.56 20.02 16 28 H 0.05 2.80 7.53 -2.39 -0.02 2.79 16 29 H 0.04 2.23 8.04 -2.39 -0.02 2.22 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.65 6.44 -2.39 -0.02 2.64 16 32 H 0.11 2.94 7.97 -2.39 -0.02 2.92 16 33 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 34 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 2.40 7.70 -2.39 -0.02 2.38 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -66.22 335.26 -2.06 -68.28 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.50 Total: 32.73 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.05 Total: -4.82 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -6.02 Total: -92.23 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -3.62 Total: -48.70 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.22 -2.06 -68.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.941 kcal (2) G-P(sol) polarization free energy of solvation -66.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds