Wall clock time and date at job start Fri Apr 10 2020 17:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48504 * 109.47150 * 270.00226 * 3 2 1 5 5 H 1.48500 * 109.47118 * 30.00112 * 3 2 1 6 6 H 1.48492 * 109.47410 * 150.00291 * 3 2 1 7 7 C 1.38955 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00280 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00514 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47610 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99701 * 66.04522 * 13 12 10 15 15 C 1.53002 * 109.47050 * 199.98639 * 14 13 12 16 16 C 1.50697 * 109.47320 * 174.93830 * 15 14 13 17 17 O 1.20825 * 120.00053 * 359.97438 * 16 15 14 18 18 O 1.34225 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.46892 * 111.00119 * 190.00183 * 13 12 10 20 20 C 1.50703 * 109.47148 * 75.72622 * 19 13 12 21 21 C 1.38239 * 119.99855 * 84.47510 * 20 19 13 22 22 C 1.38238 * 119.99963 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.00100 * 359.95912 * 22 21 20 24 24 C 1.38236 * 119.99873 * 0.27248 * 23 22 21 25 25 C 1.38232 * 120.00268 * 359.51508 * 24 23 22 26 26 H 0.97008 * 119.99789 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00345 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46993 * 59.99971 * 12 10 9 29 29 H 1.09000 * 109.47221 * 300.00367 * 12 10 9 30 30 H 1.08993 * 109.47545 * 319.98326 * 14 13 12 31 31 H 1.09002 * 109.47280 * 79.99037 * 14 13 12 32 32 H 1.09004 * 109.46799 * 294.93668 * 15 14 13 33 33 H 1.09006 * 109.47295 * 54.93269 * 15 14 13 34 34 H 0.96700 * 116.99893 * 179.97438 * 18 16 15 35 35 H 1.09000 * 109.47591 * 315.72710 * 19 13 12 36 36 H 1.08996 * 109.47145 * 195.72567 * 19 13 12 37 37 H 1.08003 * 119.99706 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.99489 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00421 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.99962 * 179.72710 * 24 23 22 41 41 H 1.08000 * 120.00767 * 180.25289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5579 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1981 -5.9796 -0.0037 14 6 2.9634 -6.0185 1.2495 15 6 4.2440 -6.8291 1.0402 16 6 5.0883 -6.7654 2.2868 17 8 4.7053 -6.1359 3.2444 18 8 6.2663 -7.4073 2.3331 19 6 1.5137 -7.2572 -0.2425 20 6 1.1549 -7.3699 -1.7018 21 6 2.0867 -7.8396 -2.6084 22 6 1.7575 -7.9435 -3.9470 23 6 0.4962 -7.5784 -4.3788 24 6 -0.4341 -7.1041 -3.4730 25 6 -0.1064 -7.0043 -2.1338 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0016 28 1 0.6166 -4.9201 -0.8931 29 1 0.6172 -4.9213 0.8869 30 1 3.2213 -5.0029 1.5495 31 1 2.3611 -6.4856 2.0287 32 1 3.9865 -7.8669 0.8284 33 1 4.8032 -6.4149 0.2011 34 1 6.7725 -7.3370 3.1540 35 1 0.6059 -7.3011 0.3592 36 1 2.1730 -8.0799 0.0341 37 1 3.0720 -8.1255 -2.2709 38 1 2.4857 -8.3101 -4.6553 39 1 0.2388 -7.6598 -5.4245 40 1 -1.4182 -6.8146 -3.8111 41 1 -0.8345 -6.6376 -1.4254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692446166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:47 Heat of formation + Delta-G solvation = -97.052962 kcal Electronic energy + Delta-G solvation = -24838.068786 eV Core-core repulsion = 21103.907669 eV Total energy + Delta-G solvation = -3734.161117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21306 -39.44683 -38.36180 -36.61009 -35.98361 -33.84052 -32.25816 -31.28819 -30.87821 -30.65393 -27.54400 -25.65221 -24.50851 -22.60076 -22.44303 -21.10143 -20.35124 -19.14532 -18.06053 -17.79025 -16.83608 -16.55929 -16.23742 -15.86788 -15.25885 -15.19969 -14.85378 -14.50503 -14.24496 -13.90115 -13.66063 -13.50781 -13.34513 -12.91261 -12.82538 -12.46808 -12.34989 -11.95866 -11.80026 -11.47534 -11.46394 -11.33732 -11.03367 -10.99003 -10.81593 -10.67424 -10.47753 -10.36811 -10.18639 -9.43934 -8.83316 -8.69551 -8.42260 -7.97641 -7.89555 -6.38415 -3.78733 1.40504 1.49407 2.31048 3.03684 3.20352 3.28715 3.34852 3.77318 3.94795 4.15498 4.35002 4.78457 4.87821 4.96221 5.06150 5.10525 5.15885 5.19849 5.26753 5.32987 5.47348 5.53407 5.59758 5.67639 5.70314 5.82380 5.90661 6.05973 6.10609 6.12838 6.27861 6.38128 6.52216 6.54976 6.57631 6.69501 7.06833 7.20761 7.29996 7.58571 7.95846 8.09626 8.65055 9.21558 9.57954 10.09549 10.79436 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004896 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.550953 B = 5717.310911 C = 8365.730280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.510 5.510 14 C 0.066 3.934 15 C -0.103 4.103 16 C 0.481 3.519 17 O -0.514 6.514 18 O -0.522 6.522 19 C 0.087 3.913 20 C -0.071 4.071 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.114 4.114 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.406 0.594 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -18.259 -2.542 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.233 5.233 14 C -0.062 4.062 15 C -0.141 4.141 16 C 0.323 3.677 17 O -0.401 6.401 18 O -0.333 6.333 19 C -0.040 4.040 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.904 -17.858 -3.002 18.208 hybrid contribution -0.498 0.877 1.074 1.473 sum 1.406 -16.981 -1.929 17.148 Atomic orbital electron populations 1.69613 1.05921 1.28075 1.50769 1.25242 0.95615 0.99659 0.97400 0.85872 0.79252 0.80902 0.78357 1.20430 1.20966 1.19447 1.19685 0.93335 0.82204 1.47418 0.87948 1.41850 1.09162 1.04585 1.64468 1.19697 0.88415 0.84517 0.84383 1.90497 1.13628 1.86916 1.55064 1.21900 0.93983 0.90962 1.01702 1.61404 1.25454 1.01282 1.35208 1.21960 0.91949 1.03131 0.89150 1.21257 0.95930 1.02865 0.94017 1.23587 0.79504 0.74711 0.89900 1.90739 1.71602 1.39587 1.38216 1.84542 1.33257 1.69946 1.45600 1.21164 0.97909 0.92633 0.92286 1.19752 0.93644 0.98344 0.95435 1.20981 0.98761 0.98838 0.92886 1.21121 0.96572 1.00575 0.95840 1.21108 0.94031 0.99770 0.99352 1.21097 0.99562 0.99842 0.93372 1.21090 0.96390 0.99774 0.96022 0.91932 0.77540 0.88984 0.93305 0.87282 0.94697 0.88564 0.86287 0.73545 0.93700 0.89959 0.86064 0.86338 0.86477 0.86266 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.43 5.29 -10.97 -0.06 -14.48 16 10 C 0.44 10.52 7.29 -10.99 -0.08 10.44 16 11 O -0.58 -15.40 14.12 5.55 0.08 -15.32 16 12 C 0.05 0.81 5.27 -4.97 -0.03 0.79 16 13 N -0.51 -8.06 4.09 -237.52 -0.97 -9.03 16 14 C 0.07 1.05 3.81 -3.83 -0.01 1.04 16 15 C -0.10 -1.34 5.86 -27.88 -0.16 -1.50 16 16 C 0.48 6.64 8.33 36.00 0.30 6.94 16 17 O -0.51 -8.96 16.68 -18.75 -0.31 -9.28 16 18 O -0.52 -5.52 13.42 -39.24 -0.53 -6.05 16 19 C 0.09 1.07 4.94 -4.98 -0.02 1.04 16 20 C -0.07 -0.90 5.03 -104.62 -0.53 -1.42 16 21 C -0.10 -1.16 9.72 -39.58 -0.38 -1.54 16 22 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.11 -1.40 8.40 -39.58 -0.33 -1.73 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 28 H 0.09 1.55 6.33 -51.93 -0.33 1.22 16 29 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.11 2.24 5.67 -51.93 -0.29 1.95 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 32 H 0.10 0.95 6.91 -51.93 -0.36 0.60 16 33 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.41 2.60 9.10 45.56 0.41 3.01 16 35 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 36 H 0.08 0.84 6.56 -51.93 -0.34 0.50 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.12 1.32 7.99 -52.49 -0.42 0.90 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -34.11 351.82 -8.00 -42.10 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -4.52 Total: 13.77 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.69 Total: 0.70 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.31 Total: -47.56 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.76 Total: -30.65 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.11 -8.00 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692446166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.949 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds