Wall clock time and date at job start Fri Apr 10 2020 17:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00316 * 2 1 4 4 H 1.48504 * 109.47150 * 270.00226 * 3 2 1 5 5 H 1.48500 * 109.47118 * 30.00112 * 3 2 1 6 6 H 1.48492 * 109.47410 * 150.00291 * 3 2 1 7 7 C 1.38955 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00280 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00514 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47610 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99701 * 66.04522 * 13 12 10 15 15 C 1.53002 * 109.47050 * 199.98639 * 14 13 12 16 16 C 1.50697 * 109.47320 * 174.93830 * 15 14 13 17 17 O 1.20825 * 120.00053 * 359.97438 * 16 15 14 18 18 O 1.34225 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.46892 * 111.00119 * 190.00183 * 13 12 10 20 20 C 1.50703 * 109.47148 * 75.72622 * 19 13 12 21 21 C 1.38239 * 119.99855 * 84.47510 * 20 19 13 22 22 C 1.38238 * 119.99963 * 179.97438 * 21 20 19 23 23 C 1.38230 * 120.00100 * 359.95912 * 22 21 20 24 24 C 1.38236 * 119.99873 * 0.27248 * 23 22 21 25 25 C 1.38232 * 120.00268 * 359.51508 * 24 23 22 26 26 H 0.97008 * 119.99789 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00345 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.46993 * 59.99971 * 12 10 9 29 29 H 1.09000 * 109.47221 * 300.00367 * 12 10 9 30 30 H 1.08993 * 109.47545 * 319.98326 * 14 13 12 31 31 H 1.09002 * 109.47280 * 79.99037 * 14 13 12 32 32 H 1.09004 * 109.46799 * 294.93668 * 15 14 13 33 33 H 1.09006 * 109.47295 * 54.93269 * 15 14 13 34 34 H 0.96700 * 116.99893 * 179.97438 * 18 16 15 35 35 H 1.09000 * 109.47591 * 315.72710 * 19 13 12 36 36 H 1.08996 * 109.47145 * 195.72567 * 19 13 12 37 37 H 1.08003 * 119.99706 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.99489 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00421 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.99962 * 179.72710 * 24 23 22 41 41 H 1.08000 * 120.00767 * 180.25289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0887 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5579 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1981 -5.9796 -0.0037 14 6 2.9634 -6.0185 1.2495 15 6 4.2440 -6.8291 1.0402 16 6 5.0883 -6.7654 2.2868 17 8 4.7053 -6.1359 3.2444 18 8 6.2663 -7.4073 2.3331 19 6 1.5137 -7.2572 -0.2425 20 6 1.1549 -7.3699 -1.7018 21 6 2.0867 -7.8396 -2.6084 22 6 1.7575 -7.9435 -3.9470 23 6 0.4962 -7.5784 -4.3788 24 6 -0.4341 -7.1041 -3.4730 25 6 -0.1064 -7.0043 -2.1338 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0016 28 1 0.6166 -4.9201 -0.8931 29 1 0.6172 -4.9213 0.8869 30 1 3.2213 -5.0029 1.5495 31 1 2.3611 -6.4856 2.0287 32 1 3.9865 -7.8669 0.8284 33 1 4.8032 -6.4149 0.2011 34 1 6.7725 -7.3370 3.1540 35 1 0.6059 -7.3011 0.3592 36 1 2.1730 -8.0799 0.0341 37 1 3.0720 -8.1255 -2.2709 38 1 2.4857 -8.3101 -4.6553 39 1 0.2388 -7.6598 -5.4245 40 1 -1.4182 -6.8146 -3.8111 41 1 -0.8345 -6.6376 -1.4254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692446166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:46 Heat of formation + Delta-G solvation = -121.438339 kcal Electronic energy + Delta-G solvation = -24839.126216 eV Core-core repulsion = 21103.907669 eV Total energy + Delta-G solvation = -3735.218547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32546 -40.59428 -39.82969 -37.93396 -37.05575 -35.85991 -33.39945 -33.13967 -31.99367 -31.61679 -28.94964 -26.88088 -26.24752 -23.76489 -23.35125 -22.06153 -21.53191 -20.87330 -19.86720 -19.06953 -17.99597 -17.71561 -17.48811 -17.10199 -16.57096 -16.41719 -16.21747 -15.92668 -15.73174 -15.26889 -15.07191 -14.95841 -14.22230 -14.09951 -13.97804 -13.61243 -13.53417 -13.45957 -13.17109 -12.96443 -12.86708 -12.54393 -12.52819 -12.40833 -12.13054 -12.00246 -11.80772 -11.70544 -11.62493 -11.42245 -10.25898 -9.98065 -9.69363 -9.59483 -9.23993 -8.45464 -5.93514 0.52087 0.62734 1.22969 1.37436 1.40594 1.53356 2.03867 2.08863 2.29623 2.78446 3.13109 3.21629 3.44982 3.80966 3.98231 4.00403 4.10915 4.26101 4.28897 4.32671 4.39140 4.46028 4.51717 4.56041 4.60040 4.72135 4.77299 4.87120 4.99206 5.04792 5.22076 5.27488 5.41648 5.62926 5.65733 5.72657 5.75668 5.90855 6.05072 6.15023 6.25281 6.61911 7.01424 7.14482 7.58130 8.14028 8.72168 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.008474 B = 0.004896 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.550953 B = 5717.310911 C = 8365.730280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.610 6.610 12 C 0.059 3.941 13 N -0.519 5.519 14 C 0.070 3.930 15 C -0.096 4.096 16 C 0.487 3.513 17 O -0.558 6.558 18 O -0.510 6.510 19 C 0.090 3.910 20 C -0.087 4.087 21 C -0.109 4.109 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.129 4.129 26 H 0.277 0.723 27 H 0.395 0.605 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.426 0.574 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -19.630 -3.214 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.072 4.072 13 N -0.243 5.243 14 C -0.058 4.058 15 C -0.134 4.134 16 C 0.331 3.669 17 O -0.449 6.449 18 O -0.323 6.323 19 C -0.036 4.036 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.228 0.772 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.288 0.712 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.820 -19.267 -3.678 19.700 hybrid contribution -0.421 1.203 1.249 1.785 sum 1.399 -18.065 -2.429 18.281 Atomic orbital electron populations 1.69673 1.06782 1.29174 1.50598 1.26000 0.96526 1.02287 0.96427 0.84961 0.77858 0.77072 0.78649 1.19570 1.19524 1.19960 1.19626 0.92600 0.84028 1.49714 0.90456 1.41925 1.09236 1.04739 1.65468 1.20746 0.88378 0.85898 0.82057 1.90469 1.15500 1.87766 1.55881 1.21726 0.93773 0.88631 1.03041 1.61380 1.25596 1.02247 1.35120 1.21779 0.93616 1.00774 0.89609 1.21199 0.94380 1.04538 0.93279 1.23680 0.79996 0.73831 0.89381 1.90733 1.72785 1.41583 1.39817 1.84489 1.32087 1.68774 1.46945 1.21256 0.98741 0.91118 0.92480 1.19866 0.94031 0.99143 0.95672 1.21242 0.99264 0.98896 0.93316 1.21439 0.97161 1.00296 0.96085 1.21443 0.93956 0.99123 1.00436 1.21388 1.00516 0.99814 0.93360 1.21308 0.96698 1.00073 0.96665 0.91373 0.77171 0.87664 0.91626 0.92422 0.93559 0.84530 0.87091 0.71250 0.92451 0.87494 0.84944 0.84422 0.84492 0.84806 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.98 29.55 68.60 2.03 46.00 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -30.33 5.29 -306.99 -1.62 -31.96 16 10 C 0.44 21.46 7.29 87.66 0.64 22.10 16 11 O -0.61 -33.84 14.12 -3.07 -0.04 -33.88 16 12 C 0.06 2.10 5.27 85.56 0.45 2.55 16 13 N -0.52 -15.87 4.09 -905.39 -3.70 -19.57 16 14 C 0.07 2.21 3.81 86.30 0.33 2.54 16 15 C -0.10 -2.38 5.86 29.85 0.17 -2.20 16 16 C 0.49 13.01 8.33 71.24 0.59 13.60 16 17 O -0.56 -19.62 16.68 21.97 0.37 -19.25 16 18 O -0.51 -9.79 13.42 -51.37 -0.69 -10.48 16 19 C 0.09 1.99 4.94 85.56 0.42 2.41 16 20 C -0.09 -2.01 5.03 -19.86 -0.10 -2.11 16 21 C -0.11 -2.40 9.72 22.27 0.22 -2.19 16 22 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 23 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 24 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 25 C -0.13 -2.95 8.40 22.27 0.19 -2.77 16 26 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 27 H 0.39 19.81 7.90 -92.71 -0.73 19.08 16 28 H 0.11 3.46 6.33 -2.38 -0.02 3.44 16 29 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 30 H 0.06 2.45 5.67 -2.39 -0.01 2.44 16 31 H 0.05 1.33 8.00 -2.39 -0.02 1.31 16 32 H 0.14 2.24 6.91 -2.38 -0.02 2.22 16 33 H 0.11 2.98 8.14 -2.38 -0.02 2.97 16 34 H 0.43 4.62 9.10 -74.06 -0.67 3.95 16 35 H 0.06 1.14 7.91 -2.39 -0.02 1.12 16 36 H 0.11 1.81 6.56 -2.39 -0.02 1.80 16 37 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.13 2.59 7.99 -2.91 -0.02 2.57 16 Total: -1.00 -75.70 351.82 1.15 -74.54 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.33 Total: 37.13 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.87 Total: 7.81 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -5.04 Total: -101.87 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.37 Total: -63.62 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.70 1.15 -74.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692446166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.894 kcal (2) G-P(sol) polarization free energy of solvation -75.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds