Wall clock time and date at job start Fri Apr 10 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86797 * 120.00482 * 2 1 4 4 H 1.48503 * 109.47181 * 272.59422 * 3 2 1 5 5 H 1.48506 * 109.46723 * 32.59366 * 3 2 1 6 6 H 1.48499 * 109.47410 * 152.59239 * 3 2 1 7 7 C 1.39898 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00079 * 347.75098 * 7 2 1 9 9 C 1.41152 * 119.99647 * 167.75870 * 7 2 1 10 10 C 1.40872 * 120.16637 * 328.76250 * 9 7 2 11 11 C 1.36369 * 119.82925 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.17200 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83694 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99506 * 35.50777 * 13 12 11 15 15 O 1.21583 * 120.00317 * 355.30925 * 14 13 12 16 16 N 1.34784 * 119.99883 * 175.31623 * 14 13 12 17 17 C 1.47024 * 125.64535 * 0.02562 * 16 14 13 18 18 C 1.54319 * 107.26739 * 178.90813 * 17 16 14 19 19 H 1.09001 * 110.71896 * 219.44130 * 18 17 16 20 20 O 1.42909 * 110.72152 * 96.17410 * 18 17 16 21 21 C 1.55156 * 102.94652 * 337.80654 * 18 17 16 22 22 H 1.09001 * 111.00366 * 277.42983 * 21 18 17 23 23 C 1.52994 * 111.03885 * 153.59163 * 21 18 17 24 24 O 1.42901 * 109.47330 * 181.33094 * 23 21 18 25 25 C 1.47417 * 125.64866 * 179.97438 * 16 14 13 26 26 C 1.39486 * 120.33118 * 0.28067 * 12 11 10 27 27 C 1.36370 * 120.16629 * 359.47638 * 26 12 11 28 28 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.07883 * 359.96405 * 10 9 7 30 30 H 1.08005 * 119.91476 * 180.02562 * 11 10 9 31 31 H 0.96998 * 120.00233 * 215.50643 * 13 12 11 32 32 H 1.08998 * 109.88131 * 298.32524 * 17 16 14 33 33 H 1.08994 * 109.88202 * 59.49380 * 17 16 14 34 34 H 0.96696 * 114.00202 * 61.44683 * 20 18 17 35 35 H 1.09005 * 109.47546 * 301.33451 * 23 21 18 36 36 H 1.09003 * 109.47354 * 61.33385 * 23 21 18 37 37 H 0.96700 * 114.00556 * 179.97438 * 24 23 21 38 38 H 1.09001 * 110.36814 * 322.99224 * 25 16 14 39 39 H 1.08998 * 110.37538 * 85.32213 * 25 16 14 40 40 H 1.07993 * 119.91380 * 179.72505 * 26 12 11 41 41 H 1.08006 * 120.08640 * 180.23658 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4356 2.0780 -1.3987 5 1 1.4689 2.6361 0.7542 6 1 3.5668 1.4248 0.6445 7 6 2.0082 -1.2116 -0.0005 8 1 1.4866 -2.1363 0.1975 9 6 3.3956 -1.2254 -0.2597 10 6 3.9653 -0.2635 -1.1169 11 6 5.3066 -0.2830 -1.3622 12 6 6.1142 -1.2515 -0.7663 13 7 7.4829 -1.2652 -1.0220 14 6 8.1495 -0.1052 -1.1847 15 8 7.5431 0.9485 -1.1933 16 7 9.4886 -0.1134 -1.3380 17 6 10.3426 -1.3101 -1.3479 18 6 11.7930 -0.8359 -1.5779 19 1 12.3207 -1.5181 -2.2444 20 8 12.4854 -0.7051 -0.3346 21 6 11.6033 0.5501 -2.2490 22 1 11.4247 0.4448 -3.3191 23 6 12.8056 1.4582 -1.9834 24 8 12.5826 2.7332 -2.5889 25 6 10.3392 1.0761 -1.5245 26 6 5.5567 -2.2105 0.0794 27 6 4.2178 -2.2008 0.3380 28 1 -0.4850 0.8401 0.0004 29 1 3.3412 0.4872 -1.5788 30 1 5.7448 0.4541 -2.0188 31 1 7.9565 -2.1095 -1.0830 32 1 10.2687 -1.8262 -0.3906 33 1 10.0380 -1.9762 -2.1550 34 1 12.5622 -1.5314 0.1617 35 1 12.9355 1.5842 -0.9084 36 1 13.7027 1.0067 -2.4072 37 1 13.3061 3.3618 -2.4602 38 1 9.8282 1.8150 -2.1417 39 1 10.6068 1.5064 -0.5595 40 1 6.1876 -2.9601 0.5336 41 1 3.7881 -2.9416 0.9961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711335543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:51 Heat of formation + Delta-G solvation = -91.473678 kcal Electronic energy + Delta-G solvation = -24820.354663 eV Core-core repulsion = 21086.435482 eV Total energy + Delta-G solvation = -3733.919181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54899 -39.05842 -37.50143 -36.84148 -35.43170 -34.46550 -33.09227 -31.78461 -29.89610 -29.39172 -28.98531 -26.17487 -24.46929 -23.17162 -21.76808 -21.07986 -20.51186 -19.55488 -18.45018 -17.87803 -17.53631 -17.33162 -16.45660 -15.85995 -15.53991 -15.32149 -14.97728 -14.56824 -14.27251 -13.88186 -13.78764 -13.63170 -13.37439 -13.01884 -12.53526 -12.48726 -12.39291 -12.22619 -12.00974 -11.85907 -11.31030 -11.24961 -10.86105 -10.73791 -10.70471 -10.51288 -10.24238 -10.13974 -9.72429 -9.58663 -9.05701 -8.97816 -8.63490 -7.74033 -7.10935 -6.86550 -4.38863 2.48271 2.73636 2.77730 3.21698 3.31316 3.43940 3.53132 3.58339 3.74215 4.05123 4.08697 4.17678 4.45013 4.58262 4.72961 4.86042 4.89522 5.04446 5.15490 5.25533 5.31666 5.45875 5.56831 5.79274 5.90596 5.93430 6.12364 6.20332 6.47360 6.73527 6.80452 6.94658 7.05167 7.12603 7.22590 7.31482 7.48432 7.63012 7.69844 7.92732 8.13062 8.30289 8.39810 8.66833 8.85173 8.97669 10.15469 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.003137 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.397366 B = 8922.864086 C = 9728.914019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.443 4.443 8 H 0.091 0.909 9 C 0.087 3.913 10 C -0.227 4.227 11 C -0.063 4.063 12 C 0.011 3.989 13 N -0.665 5.665 14 C 0.714 3.286 15 O -0.571 6.571 16 N -0.640 5.640 17 C 0.070 3.930 18 C 0.102 3.898 19 H 0.082 0.918 20 O -0.556 6.556 21 C -0.095 4.095 22 H 0.102 0.898 23 C 0.095 3.905 24 O -0.574 6.574 25 C 0.141 3.859 26 C -0.096 4.096 27 C -0.196 4.196 28 H 0.285 0.715 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.391 0.609 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.383 0.617 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.381 0.619 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.152 -2.328 -3.219 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.165 1.165 7 C -0.472 4.472 8 H 0.109 0.891 9 C 0.083 3.917 10 C -0.247 4.247 11 C -0.083 4.083 12 C -0.081 4.081 13 N -0.311 5.311 14 C 0.417 3.583 15 O -0.448 6.448 16 N -0.380 5.380 17 C -0.055 4.055 18 C 0.042 3.958 19 H 0.100 0.900 20 O -0.362 6.362 21 C -0.114 4.114 22 H 0.120 0.880 23 C 0.017 3.983 24 O -0.380 6.380 25 C 0.018 3.982 26 C -0.117 4.117 27 C -0.216 4.216 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.224 0.776 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.228 0.772 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 24.800 -1.120 -3.545 25.077 hybrid contribution 0.961 -0.178 0.323 1.029 sum 25.761 -1.298 -3.222 25.994 Atomic orbital electron populations 1.69682 1.07954 1.30158 1.36233 1.26151 0.94815 1.01687 0.90914 0.86315 0.81012 0.79536 0.79153 1.19688 1.22149 1.16486 1.19449 0.91347 0.95517 1.40894 0.89139 1.17805 0.93478 0.90977 0.89416 1.20739 0.94576 1.04212 1.05171 1.20498 0.92878 0.97093 0.97838 1.16930 0.80198 1.03926 1.07072 1.42041 1.08092 1.06278 1.74681 1.15518 0.79506 0.84761 0.78563 1.90931 1.65678 1.30455 1.57698 1.47521 1.04368 1.07704 1.78405 1.22751 0.91193 0.89404 1.02109 1.22727 0.90314 0.96600 0.86144 0.90007 1.86509 1.77961 1.38197 1.33555 1.22461 0.95300 0.93045 1.00606 0.87973 1.21851 0.95587 0.83411 0.97493 1.86489 1.47968 1.24490 1.79053 1.21962 0.88525 0.87724 1.00019 1.20148 0.95598 0.98477 0.97454 1.20590 0.92279 1.03790 1.04902 0.90508 0.87982 0.86892 0.77561 0.90937 0.90822 0.76870 0.92116 0.93355 0.77222 0.89893 0.91460 0.88678 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.45 13.93 55.55 0.77 -21.68 16 2 C 0.08 2.24 5.47 -17.34 -0.09 2.15 16 3 Si 0.91 22.48 24.39 -169.99 -4.15 18.33 16 4 H -0.27 -6.55 6.66 56.52 0.38 -6.18 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.24 -6.27 6.67 56.52 0.38 -5.90 16 7 C -0.44 -12.28 9.59 -37.86 -0.36 -12.64 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.09 2.26 5.13 -106.80 -0.55 1.71 16 10 C -0.23 -5.87 6.93 -39.26 -0.27 -6.15 16 11 C -0.06 -1.54 8.61 -39.79 -0.34 -1.88 16 12 C 0.01 0.25 6.30 -83.57 -0.53 -0.28 16 13 N -0.66 -11.66 5.26 -14.10 -0.07 -11.73 16 14 C 0.71 13.26 8.32 -86.91 -0.72 12.54 16 15 O -0.57 -13.30 14.02 5.29 0.07 -13.22 16 16 N -0.64 -8.79 3.33 -176.25 -0.59 -9.37 16 17 C 0.07 0.60 5.92 -3.07 -0.02 0.58 16 18 C 0.10 0.68 4.09 -24.90 -0.10 0.58 16 19 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 20 O -0.56 -3.68 12.11 -35.23 -0.43 -4.10 16 21 C -0.09 -0.85 3.25 -88.48 -0.29 -1.13 16 22 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 23 C 0.09 0.75 6.10 37.15 0.23 0.97 16 24 O -0.57 -5.04 13.51 -35.23 -0.48 -5.52 16 25 C 0.14 1.80 6.23 -2.54 -0.02 1.79 16 26 C -0.10 -2.01 9.90 -39.79 -0.39 -2.40 16 27 C -0.20 -4.56 9.74 -39.26 -0.38 -4.94 16 28 H 0.28 7.14 8.30 -40.82 -0.34 6.81 16 29 H 0.10 2.66 4.40 -52.49 -0.23 2.43 16 30 H 0.11 2.80 6.22 -52.48 -0.33 2.47 16 31 H 0.39 5.26 7.80 -40.82 -0.32 4.95 16 32 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.38 1.00 9.09 45.56 0.41 1.42 16 35 H 0.06 0.51 7.43 -51.93 -0.39 0.12 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.38 1.58 9.12 45.56 0.42 2.00 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 39 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -35.25 335.75 -7.47 -42.72 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -3.83 Total: 8.62 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.84 Total: -9.11 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.11 Total: -42.78 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.83 Total: -22.84 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.15 Total: 18.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.25 -7.47 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711335543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.757 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds