Wall clock time and date at job start Fri Apr 10 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86797 * 120.00482 * 2 1 4 4 H 1.48503 * 109.47181 * 272.59422 * 3 2 1 5 5 H 1.48506 * 109.46723 * 32.59366 * 3 2 1 6 6 H 1.48499 * 109.47410 * 152.59239 * 3 2 1 7 7 C 1.39898 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00079 * 347.75098 * 7 2 1 9 9 C 1.41152 * 119.99647 * 167.75870 * 7 2 1 10 10 C 1.40872 * 120.16637 * 328.76250 * 9 7 2 11 11 C 1.36369 * 119.82925 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.17200 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83694 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99506 * 35.50777 * 13 12 11 15 15 O 1.21583 * 120.00317 * 355.30925 * 14 13 12 16 16 N 1.34784 * 119.99883 * 175.31623 * 14 13 12 17 17 C 1.47024 * 125.64535 * 0.02562 * 16 14 13 18 18 C 1.54319 * 107.26739 * 178.90813 * 17 16 14 19 19 H 1.09001 * 110.71896 * 219.44130 * 18 17 16 20 20 O 1.42909 * 110.72152 * 96.17410 * 18 17 16 21 21 C 1.55156 * 102.94652 * 337.80654 * 18 17 16 22 22 H 1.09001 * 111.00366 * 277.42983 * 21 18 17 23 23 C 1.52994 * 111.03885 * 153.59163 * 21 18 17 24 24 O 1.42901 * 109.47330 * 181.33094 * 23 21 18 25 25 C 1.47417 * 125.64866 * 179.97438 * 16 14 13 26 26 C 1.39486 * 120.33118 * 0.28067 * 12 11 10 27 27 C 1.36370 * 120.16629 * 359.47638 * 26 12 11 28 28 H 0.97007 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.07883 * 359.96405 * 10 9 7 30 30 H 1.08005 * 119.91476 * 180.02562 * 11 10 9 31 31 H 0.96998 * 120.00233 * 215.50643 * 13 12 11 32 32 H 1.08998 * 109.88131 * 298.32524 * 17 16 14 33 33 H 1.08994 * 109.88202 * 59.49380 * 17 16 14 34 34 H 0.96696 * 114.00202 * 61.44683 * 20 18 17 35 35 H 1.09005 * 109.47546 * 301.33451 * 23 21 18 36 36 H 1.09003 * 109.47354 * 61.33385 * 23 21 18 37 37 H 0.96700 * 114.00556 * 179.97438 * 24 23 21 38 38 H 1.09001 * 110.36814 * 322.99224 * 25 16 14 39 39 H 1.08998 * 110.37538 * 85.32213 * 25 16 14 40 40 H 1.07993 * 119.91380 * 179.72505 * 26 12 11 41 41 H 1.08006 * 120.08640 * 180.23658 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4356 2.0780 -1.3987 5 1 1.4689 2.6361 0.7542 6 1 3.5668 1.4248 0.6445 7 6 2.0082 -1.2116 -0.0005 8 1 1.4866 -2.1363 0.1975 9 6 3.3956 -1.2254 -0.2597 10 6 3.9653 -0.2635 -1.1169 11 6 5.3066 -0.2830 -1.3622 12 6 6.1142 -1.2515 -0.7663 13 7 7.4829 -1.2652 -1.0220 14 6 8.1495 -0.1052 -1.1847 15 8 7.5431 0.9485 -1.1933 16 7 9.4886 -0.1134 -1.3380 17 6 10.3426 -1.3101 -1.3479 18 6 11.7930 -0.8359 -1.5779 19 1 12.3207 -1.5181 -2.2444 20 8 12.4854 -0.7051 -0.3346 21 6 11.6033 0.5501 -2.2490 22 1 11.4247 0.4448 -3.3191 23 6 12.8056 1.4582 -1.9834 24 8 12.5826 2.7332 -2.5889 25 6 10.3392 1.0761 -1.5245 26 6 5.5567 -2.2105 0.0794 27 6 4.2178 -2.2008 0.3380 28 1 -0.4850 0.8401 0.0004 29 1 3.3412 0.4872 -1.5788 30 1 5.7448 0.4541 -2.0188 31 1 7.9565 -2.1095 -1.0830 32 1 10.2687 -1.8262 -0.3906 33 1 10.0380 -1.9762 -2.1550 34 1 12.5622 -1.5314 0.1617 35 1 12.9355 1.5842 -0.9084 36 1 13.7027 1.0067 -2.4072 37 1 13.3061 3.3618 -2.4602 38 1 9.8282 1.8150 -2.1417 39 1 10.6068 1.5064 -0.5595 40 1 6.1876 -2.9601 0.5336 41 1 3.7881 -2.9416 0.9961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711335543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:51 Heat of formation + Delta-G solvation = -121.904261 kcal Electronic energy + Delta-G solvation = -24821.674232 eV Core-core repulsion = 21086.435482 eV Total energy + Delta-G solvation = -3735.238751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.77252 -40.24385 -39.09215 -37.45947 -36.34383 -36.14737 -34.93749 -32.79352 -31.75794 -31.13227 -29.74403 -27.41596 -25.97839 -24.08362 -23.61598 -22.67997 -21.29920 -20.95369 -19.69456 -19.30406 -18.81870 -18.14130 -17.84910 -17.26820 -16.87116 -16.40399 -15.96689 -15.75774 -15.57448 -15.33017 -15.13198 -14.75078 -14.50697 -14.43067 -14.31384 -14.04359 -13.84562 -13.69012 -13.22380 -12.77720 -12.71548 -12.70654 -12.38293 -12.11497 -11.96224 -11.86319 -11.71780 -11.41568 -11.05504 -10.98464 -10.83897 -10.72927 -9.79478 -9.61611 -8.93313 -8.89143 -6.44392 0.63533 0.84839 1.22651 1.32618 1.43787 1.51172 2.03941 2.08859 2.62350 2.92312 3.11648 3.22828 3.48852 3.48902 3.67426 4.11116 4.18974 4.21084 4.33417 4.34413 4.44042 4.54847 4.59788 4.63563 4.69089 4.77327 4.91486 4.93442 4.93945 5.05686 5.15328 5.22176 5.31620 5.51482 5.67844 5.85305 5.92054 6.05863 6.21782 6.38103 6.69690 6.83605 6.89873 6.92138 6.94378 7.52989 8.17855 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.003137 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.397366 B = 8922.864086 C = 9728.914019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.053 3.947 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.474 4.474 8 H 0.068 0.932 9 C 0.063 3.937 10 C -0.239 4.239 11 C -0.085 4.085 12 C 0.038 3.962 13 N -0.653 5.653 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.633 5.633 17 C 0.058 3.942 18 C 0.117 3.883 19 H 0.122 0.878 20 O -0.570 6.570 21 C -0.092 4.092 22 H 0.105 0.895 23 C 0.098 3.902 24 O -0.599 6.599 25 C 0.136 3.864 26 C -0.087 4.087 27 C -0.194 4.194 28 H 0.292 0.708 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.416 0.584 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.402 0.598 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.147 0.853 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.382 -4.263 -3.144 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.161 4.161 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.087 0.913 9 C 0.061 3.939 10 C -0.259 4.259 11 C -0.105 4.105 12 C -0.056 4.056 13 N -0.301 5.301 14 C 0.409 3.591 15 O -0.508 6.508 16 N -0.372 5.372 17 C -0.064 4.064 18 C 0.058 3.942 19 H 0.140 0.860 20 O -0.380 6.380 21 C -0.112 4.112 22 H 0.124 0.876 23 C 0.020 3.980 24 O -0.408 6.408 25 C 0.013 3.987 26 C -0.107 4.107 27 C -0.214 4.214 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.165 0.835 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 29.121 -3.105 -3.469 29.490 hybrid contribution 0.005 0.357 0.276 0.451 sum 29.126 -2.747 -3.193 29.429 Atomic orbital electron populations 1.69691 1.08536 1.31075 1.38609 1.26573 0.95286 1.03325 0.90895 0.85611 0.79047 0.77904 0.78923 1.19721 1.20278 1.18907 1.19441 0.92416 0.95020 1.43523 0.91347 1.17952 0.93325 0.92354 0.90307 1.20752 0.95244 1.04276 1.05601 1.20577 0.92746 0.98345 0.98876 1.17103 0.81873 1.02008 1.04614 1.41787 1.06507 1.07425 1.74392 1.15740 0.81005 0.84015 0.78313 1.90902 1.67552 1.32424 1.59933 1.47507 1.03095 1.10194 1.76355 1.23235 0.91472 0.87626 1.04095 1.22700 0.89446 0.95281 0.86795 0.86040 1.86482 1.77626 1.40050 1.33813 1.22497 0.93437 0.94738 1.00481 0.87648 1.21869 0.95851 0.83083 0.97227 1.86451 1.49601 1.25487 1.79277 1.22020 0.89952 0.87291 0.99438 1.20529 0.95091 0.98811 0.96250 1.20897 0.93265 1.02919 1.04304 0.89716 0.89219 0.87828 0.74585 0.89109 0.88526 0.74638 0.92780 0.90856 0.75151 0.93130 0.92586 0.83492 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.57 13.93 21.82 0.30 -48.27 16 2 C 0.05 3.01 5.47 85.24 0.47 3.47 16 3 Si 0.96 48.04 24.39 68.60 1.67 49.71 16 4 H -0.27 -13.37 6.66 99.48 0.66 -12.71 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -14.08 6.67 99.48 0.66 -13.41 16 7 C -0.47 -27.25 9.59 23.39 0.22 -27.03 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 9 C 0.06 3.36 5.13 -21.27 -0.11 3.25 16 10 C -0.24 -12.61 6.93 22.48 0.16 -12.46 16 11 C -0.09 -4.16 8.61 22.13 0.19 -3.97 16 12 C 0.04 1.57 6.30 38.57 0.24 1.81 16 13 N -0.65 -20.84 5.26 -316.78 -1.67 -22.51 16 14 C 0.71 25.25 8.32 179.05 1.49 26.74 16 15 O -0.63 -29.59 14.02 -3.98 -0.06 -29.65 16 16 N -0.63 -16.03 3.33 -829.80 -2.76 -18.79 16 17 C 0.06 0.72 5.92 86.73 0.51 1.24 16 18 C 0.12 1.01 4.09 31.78 0.13 1.14 16 19 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 20 O -0.57 -5.03 12.11 -148.98 -1.80 -6.83 16 21 C -0.09 -1.40 3.25 -9.41 -0.03 -1.43 16 22 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 23 C 0.10 1.29 6.10 71.98 0.44 1.73 16 24 O -0.60 -9.72 13.51 -148.98 -2.01 -11.73 16 25 C 0.14 3.39 6.23 86.85 0.54 3.93 16 26 C -0.09 -3.30 9.90 22.13 0.22 -3.08 16 27 C -0.19 -8.73 9.74 22.48 0.22 -8.51 16 28 H 0.29 15.13 8.30 -92.70 -0.77 14.36 16 29 H 0.09 4.86 4.40 -2.91 -0.01 4.85 16 30 H 0.10 5.26 6.22 -2.91 -0.02 5.24 16 31 H 0.42 9.16 7.80 -92.71 -0.72 8.44 16 32 H 0.09 0.87 8.05 -2.39 -0.02 0.86 16 33 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.40 0.12 9.09 -74.06 -0.67 -0.55 16 35 H 0.05 0.79 7.43 -2.38 -0.02 0.77 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.40 2.74 9.12 -74.06 -0.68 2.07 16 38 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 39 H 0.06 1.50 8.00 -2.39 -0.02 1.48 16 40 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 41 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -81.35 335.75 -2.69 -84.04 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -1.06 Total: 17.19 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.69 Total: -13.16 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -4.12 Total: -89.57 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -3.87 Total: -48.21 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -81.35 -2.69 -84.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711335543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.865 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds