Wall clock time and date at job start Fri Apr 10 2020 17:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47033 * 2 1 4 4 C 1.39021 * 120.00325 * 179.97438 * 3 2 1 5 5 C 1.39055 * 119.96661 * 359.72899 * 4 3 2 6 6 C 1.37667 * 120.16938 * 180.27612 * 5 4 3 7 7 C 1.39939 * 120.10461 * 359.97438 * 6 5 4 8 8 C 1.47411 * 120.03792 * 180.02562 * 7 6 5 9 9 O 1.21515 * 119.99871 * 179.97438 * 8 7 6 10 10 O 1.34761 * 119.99862 * 359.97438 * 8 7 6 11 11 C 1.45198 * 117.00134 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47064 * 179.97438 * 11 10 8 13 13 C 1.39716 * 119.93284 * 0.02562 * 7 6 5 14 14 C 1.38430 * 119.83056 * 359.97438 * 13 7 6 15 15 N 1.39573 * 120.04875 * 179.97438 * 14 13 7 16 16 C 1.34774 * 120.00427 * 24.88476 * 15 14 13 17 17 O 1.21785 * 119.99866 * 5.52363 * 16 15 14 18 18 C 1.41769 * 120.00485 * 185.51783 * 16 15 14 19 19 H 1.08007 * 119.99979 * 0.02562 * 18 16 15 20 20 C 1.40138 * 120.00147 * 180.02562 * 18 16 15 21 21 N 1.30630 * 120.00237 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 120.00017 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47061 * 89.99637 * 22 20 18 24 24 H 1.48498 * 109.47042 * 209.99844 * 22 20 18 25 25 H 1.48502 * 109.46985 * 330.00059 * 22 20 18 26 26 H 1.08995 * 109.47451 * 60.00000 * 1 2 3 27 27 H 1.09007 * 109.46873 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47468 * 299.99531 * 1 2 3 29 29 H 1.09002 * 109.47468 * 240.00469 * 2 1 3 30 30 H 1.08995 * 109.47451 * 120.00000 * 2 1 3 31 31 H 0.97006 * 120.00285 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.91952 * 0.25527 * 5 4 3 33 33 H 1.08004 * 119.95193 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47093 * 299.99810 * 11 10 8 35 35 H 1.08998 * 109.46855 * 59.99673 * 11 10 8 36 36 H 1.08998 * 109.47422 * 60.00179 * 12 11 10 37 37 H 1.09004 * 109.47310 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47585 * 299.99644 * 12 11 10 39 39 H 1.07991 * 120.08394 * 180.02562 * 13 7 6 40 40 H 0.97001 * 120.00038 * 204.88939 * 15 14 13 41 41 H 0.96998 * 120.00135 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3850 1.6354 0.0005 5 6 4.2881 0.5780 0.0068 6 6 5.6425 0.8249 0.0131 7 6 6.1159 2.1417 0.0127 8 6 7.5664 2.4044 0.0188 9 8 7.9767 3.5482 0.0180 10 8 8.4373 1.3761 0.0254 11 6 9.8506 1.7091 0.0306 12 6 10.6778 0.4222 0.0383 13 6 5.2124 3.2074 0.0064 14 6 3.8511 2.9560 0.0001 15 7 2.9444 4.0172 -0.0056 16 6 3.3140 5.2167 -0.4964 17 8 4.4026 5.3487 -1.0262 18 6 2.4355 6.3249 -0.3962 19 1 1.4701 6.2080 0.0739 20 6 2.8196 7.5720 -0.9070 21 7 3.9873 7.7137 -1.4751 22 14 1.6623 9.0324 -0.7743 23 1 1.9185 9.7529 0.4987 24 1 1.8916 9.9513 -1.9180 25 1 0.2567 8.5538 -0.7978 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3879 2.1186 0.0004 32 1 3.9262 -0.4396 0.0070 33 1 6.3408 0.0009 0.0183 34 1 10.0902 2.2902 -0.8599 35 1 10.0824 2.2950 0.9200 36 1 10.4460 -0.1641 -0.8508 37 1 11.7388 0.6722 0.0418 38 1 10.4382 -0.1586 0.9291 39 1 5.5750 4.2246 0.0057 40 1 2.0483 3.8913 0.3437 41 1 4.2530 8.5768 -1.8291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003219672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:21 Heat of formation + Delta-G solvation = -121.377143 kcal Electronic energy + Delta-G solvation = -24769.588049 eV Core-core repulsion = 21034.372156 eV Total energy + Delta-G solvation = -3735.215893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64672 -40.84632 -39.06157 -37.66047 -36.79993 -35.41053 -34.49910 -32.75643 -32.12949 -30.99925 -29.44395 -28.27239 -25.41253 -24.44983 -23.63454 -23.05408 -21.66836 -21.54906 -19.68294 -18.92074 -18.39115 -17.67076 -17.53478 -17.49361 -16.90061 -16.32038 -15.98095 -15.75927 -15.26908 -15.09274 -14.96309 -14.68029 -14.52774 -14.31272 -13.77052 -13.61947 -13.54295 -13.21737 -12.91438 -12.86057 -12.81596 -12.80116 -12.64157 -12.50511 -12.41491 -12.15649 -12.03698 -11.54401 -11.52076 -11.21808 -10.98755 -10.80829 -9.81796 -9.19005 -8.37546 -8.09181 -7.00742 -0.07439 0.58198 1.37478 1.38762 1.55258 1.61610 1.69131 2.18934 2.37540 2.41792 2.91834 3.01086 3.65707 3.83976 3.93970 4.01149 4.12409 4.15652 4.31447 4.32960 4.36386 4.48770 4.56995 4.62737 4.80601 4.95535 4.97402 4.99741 5.11926 5.13908 5.19343 5.24854 5.27951 5.32215 5.46409 5.53051 5.77721 5.86568 6.12999 6.16364 6.48923 6.67932 6.72952 6.81493 7.39381 8.39422 8.57857 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.004760 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.026617 B = 5881.504706 C = 8685.983390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 N -0.736 5.736 4 C 0.218 3.782 5 C -0.186 4.186 6 C -0.030 4.030 7 C -0.194 4.194 8 C 0.513 3.487 9 O -0.559 6.559 10 O -0.348 6.348 11 C 0.049 3.951 12 C -0.139 4.139 13 C -0.066 4.066 14 C 0.075 3.925 15 N -0.687 5.687 16 C 0.527 3.473 17 O -0.612 6.612 18 C -0.565 4.565 19 H 0.094 0.906 20 C 0.029 3.971 21 N -0.804 5.804 22 Si 1.003 2.997 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.243 1.243 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.398 0.602 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.401 0.599 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -19.438 4.581 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.365 5.365 4 C 0.109 3.891 5 C -0.210 4.210 6 C -0.050 4.050 7 C -0.198 4.198 8 C 0.361 3.639 9 O -0.451 6.451 10 O -0.265 6.265 11 C -0.025 4.025 12 C -0.195 4.195 13 C -0.089 4.089 14 C -0.025 4.025 15 N -0.332 5.332 16 C 0.336 3.664 17 O -0.499 6.499 18 C -0.600 4.600 19 H 0.112 0.888 20 C -0.189 4.189 21 N -0.432 5.432 22 Si 0.822 3.178 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.166 1.166 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.188 0.812 33 H 0.181 0.819 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.236 0.764 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.507 -19.088 4.122 19.586 hybrid contribution -0.524 1.841 -0.018 1.914 sum -2.031 -17.248 4.103 17.845 Atomic orbital electron populations 1.21966 0.93230 1.04190 1.02473 1.21595 0.95677 0.81276 1.02315 1.44750 1.02007 1.09175 1.80547 1.17932 0.86235 0.90646 0.94270 1.20692 0.91330 0.98453 1.10483 1.21278 0.96150 0.94039 0.93547 1.18722 0.87807 0.95418 1.17893 1.21419 0.88269 0.82578 0.71592 1.90833 1.80753 1.24868 1.48665 1.86515 1.18998 1.36692 1.84278 1.23334 0.76273 1.00840 1.02051 1.21797 0.99140 0.94502 1.04099 1.21153 0.92161 0.99168 0.96392 1.17469 0.89609 0.87430 1.07997 1.43371 1.14831 1.10021 1.65004 1.17465 0.87700 0.82497 0.78700 1.90628 1.25846 1.83954 1.49450 1.20574 1.04502 0.94194 1.40703 0.88831 1.27092 0.96744 1.03477 0.91563 1.70203 1.20828 1.25689 1.26521 0.84939 0.78673 0.75506 0.78688 1.18686 1.19782 1.16564 0.92577 0.88806 0.91923 0.91308 0.90519 0.76638 0.81174 0.81911 0.92304 0.91861 0.90907 0.88095 0.90632 0.87546 0.76361 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.03 71.98 0.72 -1.18 16 2 C 0.11 1.75 5.62 86.38 0.49 2.23 16 3 N -0.74 -17.79 5.68 -338.88 -1.92 -19.72 16 4 C 0.22 7.01 6.68 38.64 0.26 7.27 16 5 C -0.19 -4.94 9.27 22.33 0.21 -4.74 16 6 C -0.03 -0.91 9.60 22.55 0.22 -0.69 16 7 C -0.19 -8.06 5.87 -20.09 -0.12 -8.18 16 8 C 0.51 21.78 7.89 70.24 0.55 22.33 16 9 O -0.56 -28.82 16.12 19.79 0.32 -28.50 16 10 O -0.35 -11.34 9.45 -56.71 -0.54 -11.87 16 11 C 0.05 1.29 6.20 71.98 0.45 1.73 16 12 C -0.14 -2.24 10.29 71.98 0.74 -1.50 16 13 C -0.07 -3.30 8.25 22.67 0.19 -3.11 16 14 C 0.08 3.30 6.45 38.39 0.25 3.55 16 15 N -0.69 -32.01 5.17 -311.06 -1.61 -33.62 16 16 C 0.53 31.23 7.37 85.11 0.63 31.86 16 17 O -0.61 -42.30 12.03 -4.62 -0.06 -42.35 16 18 C -0.56 -31.76 9.31 23.60 0.22 -31.54 16 19 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 20 C 0.03 1.62 5.50 85.33 0.47 2.09 16 21 N -0.80 -50.02 11.73 21.85 0.26 -49.76 16 22 Si 1.00 40.52 29.56 68.60 2.03 42.55 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.98 7.94 -2.39 -0.02 0.96 16 30 H 0.08 0.98 7.92 -2.39 -0.02 0.96 16 31 H 0.40 9.72 6.86 -92.70 -0.64 9.08 16 32 H 0.17 2.95 6.69 -2.91 -0.02 2.93 16 33 H 0.16 3.70 7.59 -2.91 -0.02 3.68 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 6.69 5.35 -2.92 -0.02 6.67 16 40 H 0.40 15.31 7.26 -92.71 -0.67 14.64 16 41 H 0.28 15.64 8.29 -92.71 -0.77 14.87 16 Total: -1.00 -87.17 350.28 3.51 -83.66 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: -0.23 Total: 39.50 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 5.26 Total: 20.12 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.28 Total: -103.10 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -0.27 Total: -82.73 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -87.17 3.51 -83.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.721 kcal (2) G-P(sol) polarization free energy of solvation -87.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds