Wall clock time and date at job start Fri Apr 10 2020 17:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47115 * 2 1 4 4 C 1.46504 * 119.99867 * 275.00459 * 3 2 1 5 5 C 1.52998 * 109.46593 * 273.68917 * 4 3 2 6 6 H 1.08998 * 109.82758 * 304.14183 * 5 4 3 7 7 C 1.54386 * 109.83066 * 183.25781 * 5 4 3 8 8 C 1.55452 * 102.18718 * 219.18164 * 7 5 4 9 9 C 1.54943 * 100.98774 * 34.03626 * 8 7 5 10 10 O 1.43237 * 109.83669 * 65.03148 * 5 4 3 11 11 S 1.65591 * 119.99890 * 94.99804 * 3 2 1 12 12 O 1.42102 * 106.40082 * 149.12439 * 11 3 2 13 13 O 1.42103 * 106.40574 * 16.20950 * 11 3 2 14 14 N 1.65605 * 107.22235 * 262.66780 * 11 3 2 15 15 C 1.46503 * 119.99897 * 275.99389 * 14 11 3 16 16 C 1.46494 * 119.99903 * 95.99401 * 14 11 3 17 17 C 1.50705 * 109.47024 * 244.76264 * 16 14 11 18 18 H 1.08005 * 119.99965 * 355.40711 * 17 16 14 19 19 C 1.37874 * 119.99896 * 175.40565 * 17 16 14 20 20 N 1.31517 * 119.99556 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00329 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46969 * 270.00120 * 21 19 17 23 23 H 1.48501 * 109.46810 * 29.99887 * 21 19 17 24 24 H 1.48498 * 109.47237 * 149.99963 * 21 19 17 25 25 H 1.09005 * 109.46697 * 300.00112 * 1 2 3 26 26 H 1.09002 * 109.47316 * 60.00142 * 1 2 3 27 27 H 1.08995 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46931 * 240.00343 * 2 1 3 29 29 H 1.08994 * 109.47034 * 119.99870 * 2 1 3 30 30 H 1.08998 * 109.47058 * 33.68212 * 4 3 2 31 31 H 1.08995 * 109.46931 * 153.68824 * 4 3 2 32 32 H 1.08999 * 110.84599 * 337.32173 * 7 5 4 33 33 H 1.09004 * 110.84735 * 100.93571 * 7 5 4 34 34 H 1.08997 * 111.05877 * 276.11771 * 8 7 5 35 35 H 1.08995 * 111.18106 * 152.00507 * 8 7 5 36 36 H 1.09004 * 110.30830 * 204.69035 * 9 8 7 37 37 H 1.09002 * 110.39458 * 82.56739 * 9 8 7 38 38 H 1.09000 * 109.46874 * 269.99799 * 15 14 11 39 39 H 1.08999 * 109.46832 * 29.99792 * 15 14 11 40 40 H 1.08999 * 109.46852 * 149.99432 * 15 14 11 41 41 H 1.08994 * 109.47092 * 124.76610 * 16 14 11 42 42 H 1.09000 * 109.47021 * 4.76186 * 16 14 11 43 43 H 0.97008 * 119.99594 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.5283 1.8095 -1.8756 6 1 4.3138 2.0553 -1.1611 7 6 3.7173 2.6352 -3.1663 8 6 4.4416 1.6246 -4.0994 9 6 3.7951 0.2907 -3.6483 10 8 3.6102 0.4241 -2.2301 11 16 2.4122 2.1202 1.4286 12 8 3.4543 3.0393 1.1311 13 8 2.5409 1.0851 2.3937 14 7 1.1052 3.0277 1.8878 15 6 0.9229 4.3763 1.3452 16 6 0.1315 2.4820 2.8365 17 6 -1.2020 2.3235 2.1524 18 1 -1.3329 2.6700 1.1378 19 6 -2.2547 1.7363 2.8216 20 7 -3.4184 1.5985 2.2247 21 14 -2.0284 1.1377 4.5766 22 1 -1.5729 -0.2757 4.5626 23 1 -1.0123 1.9785 5.2592 24 1 -3.3200 1.2345 5.3030 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3756 1.7926 -1.9536 31 1 2.0689 3.1792 -1.0788 32 1 2.7540 2.9273 -3.5845 33 1 4.3414 3.5092 -2.9798 34 1 5.5159 1.6225 -3.9156 35 1 4.2252 1.8314 -5.1474 36 1 4.4605 -0.5448 -3.8661 37 1 2.8346 0.1475 -4.1433 38 1 1.4213 5.0985 1.9918 39 1 1.3529 4.4266 0.3449 40 1 -0.1412 4.6070 1.2952 41 1 0.0275 3.1620 3.6819 42 1 0.4753 1.5106 3.1916 43 1 -4.1592 1.1857 2.6957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067716901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:28 Heat of formation + Delta-G solvation = -119.690411 kcal Electronic energy + Delta-G solvation = -25602.831660 eV Core-core repulsion = 22003.132860 eV Total energy + Delta-G solvation = -3599.698799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58453 -36.79860 -36.16197 -35.62302 -35.28750 -32.45417 -32.28341 -31.16547 -28.78921 -28.26292 -25.42851 -25.14856 -22.41363 -21.91708 -21.49070 -21.08513 -18.30453 -17.45613 -17.07958 -16.79721 -16.63360 -16.09376 -15.85053 -14.81547 -14.51408 -14.23173 -13.71949 -13.61751 -13.52765 -13.28909 -13.03381 -12.61384 -12.45228 -12.27935 -12.18881 -11.91757 -11.82731 -11.75230 -11.57057 -11.46159 -11.29710 -11.17249 -11.10277 -10.98787 -10.86204 -10.64773 -10.42019 -10.19300 -10.13082 -9.72311 -9.56490 -8.66141 -8.54332 -8.06310 -6.16702 -4.15535 1.17901 3.26690 3.33519 3.38613 3.39777 3.79236 4.04318 4.35522 4.36499 4.63615 4.73342 4.88614 5.02195 5.08433 5.13828 5.16054 5.41706 5.51405 5.54333 5.57583 5.61695 5.65082 5.74667 5.84756 5.93870 6.03037 6.06331 6.18926 6.22216 6.29125 6.42872 6.54981 6.76339 6.86274 6.96272 7.04923 7.11353 7.30049 7.40209 7.57752 8.41361 8.86884 9.44049 10.95037 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.005049 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.419958 B = 5544.773534 C = 5925.045306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.120 3.880 3 N -0.995 5.995 4 C 0.122 3.878 5 C 0.060 3.940 6 H 0.089 0.911 7 C -0.150 4.150 8 C -0.156 4.156 9 C 0.047 3.953 10 O -0.369 6.369 11 S 2.781 3.219 12 O -0.995 6.995 13 O -0.981 6.981 14 N -0.991 5.991 15 C 0.106 3.894 16 C 0.214 3.786 17 C -0.532 4.532 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.865 3.135 22 H -0.271 1.271 23 H -0.264 1.264 24 H -0.285 1.285 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 0.980 -11.619 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.005 4.005 3 N -0.832 5.832 4 C -0.005 4.005 5 C 0.000 4.000 6 H 0.106 0.894 7 C -0.188 4.188 8 C -0.193 4.193 9 C -0.029 4.029 10 O -0.288 6.288 11 S 2.790 3.210 12 O -0.979 6.979 13 O -0.965 6.965 14 N -0.832 5.832 15 C -0.041 4.041 16 C 0.090 3.910 17 C -0.570 4.570 18 H 0.101 0.899 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.691 3.309 22 H -0.196 1.196 23 H -0.188 1.188 24 H -0.210 1.210 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.396 0.657 -10.954 16.555 hybrid contribution -0.565 -0.128 0.416 0.713 sum 11.830 0.529 -10.539 15.852 Atomic orbital electron populations 1.22429 0.94861 1.01899 1.05152 1.21326 0.94983 0.80865 1.03313 1.57818 1.81571 1.23017 1.20842 1.21573 0.96434 0.95852 0.86618 1.23399 0.98506 0.81513 0.96553 0.89360 1.23162 1.01743 0.99037 0.94868 1.23270 1.00779 0.95135 1.00146 1.23368 0.99526 0.97539 0.82485 1.88490 1.94084 1.24247 1.22027 1.01902 0.73503 0.72777 0.72777 1.93535 1.54376 1.64652 1.85339 1.93544 1.86330 1.57448 1.59194 1.57469 1.43495 1.24947 1.57311 1.21263 1.03548 0.82911 0.96329 1.19580 0.88377 0.94631 0.88404 1.21288 0.93217 1.40362 1.02168 0.89926 1.24835 0.95031 0.95139 0.97627 1.69891 1.01957 1.43674 1.37405 0.87016 0.77936 0.80376 0.85561 1.19641 1.18800 1.21044 0.88298 0.93211 0.92813 0.90222 0.89995 0.89993 0.89912 0.90136 0.89695 0.90492 0.90075 0.90081 0.92324 0.93699 0.93255 0.89898 0.95427 0.93637 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 10.24 37.16 0.38 -3.02 16 2 C 0.12 2.04 6.21 -4.04 -0.03 2.02 16 3 N -1.00 -16.98 2.82 -114.38 -0.32 -17.31 16 4 C 0.12 1.71 4.92 -4.04 -0.02 1.69 16 5 C 0.06 0.77 3.77 -26.01 -0.10 0.67 16 6 H 0.09 1.28 7.80 -51.93 -0.40 0.88 16 7 C -0.15 -1.40 6.56 -24.70 -0.16 -1.56 16 8 C -0.16 -1.26 7.16 -24.40 -0.17 -1.44 16 9 C 0.05 0.46 7.78 38.18 0.30 0.76 16 10 O -0.37 -4.97 9.48 -35.23 -0.33 -5.30 16 11 S 2.78 54.99 5.96 -107.50 -0.64 54.35 16 12 O -1.00 -19.84 16.35 -57.17 -0.94 -20.77 16 13 O -0.98 -22.17 14.96 -57.17 -0.86 -23.02 16 14 N -0.99 -20.07 3.34 -123.06 -0.41 -20.48 16 15 C 0.11 1.80 10.14 59.85 0.61 2.41 16 16 C 0.21 4.99 4.63 -5.19 -0.02 4.96 16 17 C -0.53 -13.66 6.98 -34.44 -0.24 -13.90 16 18 H 0.08 2.26 7.75 -52.48 -0.41 1.85 16 19 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 21 Si 0.86 20.70 27.38 -169.99 -4.65 16.04 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.26 -6.13 6.68 56.52 0.38 -5.75 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.10 2.19 5.62 -51.93 -0.29 1.90 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.22 6.74 -51.93 -0.35 0.87 16 29 H 0.08 1.47 6.87 -51.93 -0.36 1.11 16 30 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.08 1.07 6.43 -51.93 -0.33 0.74 16 32 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.71 6.52 -51.93 -0.34 0.37 16 40 H 0.08 1.46 7.30 -51.93 -0.38 1.08 16 41 H 0.03 0.65 7.52 -51.93 -0.39 0.25 16 42 H 0.05 1.11 5.89 -51.93 -0.31 0.81 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -31.15 346.82 -8.64 -39.79 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.93 Total: 1.58 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 0.44 Total: -5.43 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.04 Total: -62.46 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -2.12 Total: -49.10 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.65 Total: 16.04 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.64 Total: 54.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.15 -8.64 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067716901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.903 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds