Wall clock time and date at job start Fri Apr 10 2020 17:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47115 * 2 1 4 4 C 1.46504 * 119.99867 * 275.00459 * 3 2 1 5 5 C 1.52998 * 109.46593 * 273.68917 * 4 3 2 6 6 H 1.08998 * 109.82758 * 304.14183 * 5 4 3 7 7 C 1.54386 * 109.83066 * 183.25781 * 5 4 3 8 8 C 1.55452 * 102.18718 * 219.18164 * 7 5 4 9 9 C 1.54943 * 100.98774 * 34.03626 * 8 7 5 10 10 O 1.43237 * 109.83669 * 65.03148 * 5 4 3 11 11 S 1.65591 * 119.99890 * 94.99804 * 3 2 1 12 12 O 1.42102 * 106.40082 * 149.12439 * 11 3 2 13 13 O 1.42103 * 106.40574 * 16.20950 * 11 3 2 14 14 N 1.65605 * 107.22235 * 262.66780 * 11 3 2 15 15 C 1.46503 * 119.99897 * 275.99389 * 14 11 3 16 16 C 1.46494 * 119.99903 * 95.99401 * 14 11 3 17 17 C 1.50705 * 109.47024 * 244.76264 * 16 14 11 18 18 H 1.08005 * 119.99965 * 355.40711 * 17 16 14 19 19 C 1.37874 * 119.99896 * 175.40565 * 17 16 14 20 20 N 1.31517 * 119.99556 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00329 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46969 * 270.00120 * 21 19 17 23 23 H 1.48501 * 109.46810 * 29.99887 * 21 19 17 24 24 H 1.48498 * 109.47237 * 149.99963 * 21 19 17 25 25 H 1.09005 * 109.46697 * 300.00112 * 1 2 3 26 26 H 1.09002 * 109.47316 * 60.00142 * 1 2 3 27 27 H 1.08995 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46931 * 240.00343 * 2 1 3 29 29 H 1.08994 * 109.47034 * 119.99870 * 2 1 3 30 30 H 1.08998 * 109.47058 * 33.68212 * 4 3 2 31 31 H 1.08995 * 109.46931 * 153.68824 * 4 3 2 32 32 H 1.08999 * 110.84599 * 337.32173 * 7 5 4 33 33 H 1.09004 * 110.84735 * 100.93571 * 7 5 4 34 34 H 1.08997 * 111.05877 * 276.11771 * 8 7 5 35 35 H 1.08995 * 111.18106 * 152.00507 * 8 7 5 36 36 H 1.09004 * 110.30830 * 204.69035 * 9 8 7 37 37 H 1.09002 * 110.39458 * 82.56739 * 9 8 7 38 38 H 1.09000 * 109.46874 * 269.99799 * 15 14 11 39 39 H 1.08999 * 109.46832 * 29.99792 * 15 14 11 40 40 H 1.08999 * 109.46852 * 149.99432 * 15 14 11 41 41 H 1.08994 * 109.47092 * 124.76610 * 16 14 11 42 42 H 1.09000 * 109.47021 * 4.76186 * 16 14 11 43 43 H 0.97008 * 119.99594 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.5283 1.8095 -1.8756 6 1 4.3138 2.0553 -1.1611 7 6 3.7173 2.6352 -3.1663 8 6 4.4416 1.6246 -4.0994 9 6 3.7951 0.2907 -3.6483 10 8 3.6102 0.4241 -2.2301 11 16 2.4122 2.1202 1.4286 12 8 3.4543 3.0393 1.1311 13 8 2.5409 1.0851 2.3937 14 7 1.1052 3.0277 1.8878 15 6 0.9229 4.3763 1.3452 16 6 0.1315 2.4820 2.8365 17 6 -1.2020 2.3235 2.1524 18 1 -1.3329 2.6700 1.1378 19 6 -2.2547 1.7363 2.8216 20 7 -3.4184 1.5985 2.2247 21 14 -2.0284 1.1377 4.5766 22 1 -1.5729 -0.2757 4.5626 23 1 -1.0123 1.9785 5.2592 24 1 -3.3200 1.2345 5.3030 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3756 1.7926 -1.9536 31 1 2.0689 3.1792 -1.0788 32 1 2.7540 2.9273 -3.5845 33 1 4.3414 3.5092 -2.9798 34 1 5.5159 1.6225 -3.9156 35 1 4.2252 1.8314 -5.1474 36 1 4.4605 -0.5448 -3.8661 37 1 2.8346 0.1475 -4.1433 38 1 1.4213 5.0985 1.9918 39 1 1.3529 4.4266 0.3449 40 1 -0.1412 4.6070 1.2952 41 1 0.0275 3.1620 3.6819 42 1 0.4753 1.5106 3.1916 43 1 -4.1592 1.1857 2.6957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067716901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:27 Heat of formation + Delta-G solvation = -141.921462 kcal Electronic energy + Delta-G solvation = -25603.795670 eV Core-core repulsion = 22003.132860 eV Total energy + Delta-G solvation = -3600.662810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48026 -38.43097 -37.50226 -37.25619 -36.92792 -34.45160 -33.15216 -32.27922 -30.23018 -29.82795 -26.96760 -26.28106 -23.99894 -23.18613 -22.60763 -22.09778 -19.83231 -19.13498 -18.56789 -18.39659 -17.87188 -17.35883 -16.91271 -16.44772 -15.93101 -15.48829 -15.33389 -14.91799 -14.64295 -14.58100 -14.34321 -14.24005 -14.10299 -13.65820 -13.52179 -13.38059 -13.23251 -13.22625 -12.96482 -12.92149 -12.59908 -12.50110 -12.33147 -12.26514 -12.15290 -12.02743 -11.90713 -11.67645 -11.61213 -11.55770 -10.73998 -10.68789 -9.88984 -9.66550 -8.25133 -6.25556 -0.37433 1.36297 1.41072 1.47982 1.90631 2.36414 2.49043 2.94593 3.09527 3.33879 3.60366 3.69341 3.88449 4.02376 4.06878 4.26789 4.30017 4.41780 4.46261 4.53768 4.61020 4.71791 4.74970 4.79640 4.86490 4.89065 4.95772 4.97720 4.99824 5.04239 5.09108 5.10878 5.29259 5.32266 5.38319 5.45425 5.60700 5.74405 5.87531 6.19155 6.35548 6.76917 7.35975 8.89221 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.005049 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.419958 B = 5544.773534 C = 5925.045306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.127 3.873 3 N -0.993 5.993 4 C 0.113 3.887 5 C 0.058 3.942 6 H 0.067 0.933 7 C -0.146 4.146 8 C -0.148 4.148 9 C 0.038 3.962 10 O -0.395 6.395 11 S 2.789 3.211 12 O -0.997 6.997 13 O -1.012 7.012 14 N -0.998 5.998 15 C 0.098 3.902 16 C 0.220 3.780 17 C -0.514 4.514 18 H 0.060 0.940 19 C 0.031 3.969 20 N -0.931 5.931 21 Si 0.910 3.090 22 H -0.272 1.272 23 H -0.252 1.252 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.927 1.428 -12.892 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.002 3.998 3 N -0.832 5.832 4 C -0.012 4.012 5 C -0.002 4.002 6 H 0.085 0.915 7 C -0.184 4.184 8 C -0.185 4.185 9 C -0.038 4.038 10 O -0.315 6.315 11 S 2.799 3.201 12 O -0.981 6.981 13 O -0.997 6.997 14 N -0.838 5.838 15 C -0.047 4.047 16 C 0.095 3.905 17 C -0.553 4.553 18 H 0.078 0.922 19 C -0.169 4.169 20 N -0.571 5.571 21 Si 0.735 3.265 22 H -0.197 1.197 23 H -0.176 1.176 24 H -0.206 1.206 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.554 1.135 -12.235 18.294 hybrid contribution -0.871 -0.263 0.686 1.140 sum 12.683 0.871 -11.549 17.175 Atomic orbital electron populations 1.22321 0.95849 1.02096 1.03394 1.21280 0.93889 0.80951 1.03707 1.57663 1.81357 1.22997 1.21193 1.21896 0.97820 0.96160 0.85358 1.23325 0.96754 0.82263 0.97815 0.91545 1.23185 1.02922 0.99073 0.93254 1.23264 1.00587 0.93525 1.01123 1.23604 1.00460 0.98919 0.80819 1.88452 1.94148 1.24538 1.24344 1.01533 0.73366 0.72312 0.72898 1.93526 1.54366 1.64734 1.85424 1.93496 1.86790 1.58492 1.60891 1.57455 1.42701 1.26307 1.57348 1.21483 1.03467 0.81657 0.98107 1.19330 0.87778 0.94439 0.88944 1.21345 0.94086 1.38770 1.01110 0.92160 1.25451 0.94893 0.95706 1.00864 1.69991 1.02804 1.45410 1.38920 0.86272 0.78257 0.79980 0.82006 1.19689 1.17556 1.20556 0.92020 0.92719 0.91756 0.88063 0.91247 0.88758 0.88881 0.88768 0.88786 0.90336 0.87720 0.89123 0.91538 0.92051 0.90625 0.90842 0.95069 0.94653 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.49 10.24 71.98 0.74 -5.76 16 2 C 0.13 4.23 6.21 86.38 0.54 4.76 16 3 N -0.99 -33.04 2.82 -515.79 -1.46 -34.49 16 4 C 0.11 2.97 4.92 86.38 0.42 3.39 16 5 C 0.06 1.39 3.77 31.06 0.12 1.51 16 6 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 7 C -0.15 -2.32 6.56 31.91 0.21 -2.11 16 8 C -0.15 -1.94 7.16 32.10 0.23 -1.71 16 9 C 0.04 0.65 7.78 72.65 0.57 1.21 16 10 O -0.39 -9.97 9.48 -148.98 -1.41 -11.38 16 11 S 2.79 108.67 5.96 -56.49 -0.34 108.33 16 12 O -1.00 -38.55 16.35 -128.00 -2.09 -40.65 16 13 O -1.01 -45.88 14.96 -128.00 -1.91 -47.79 16 14 N -1.00 -39.73 3.34 -543.23 -1.81 -41.55 16 15 C 0.10 3.20 10.14 127.77 1.30 4.50 16 16 C 0.22 10.22 4.63 85.64 0.40 10.61 16 17 C -0.51 -26.63 6.98 25.60 0.18 -26.45 16 18 H 0.06 3.35 7.75 -2.91 -0.02 3.32 16 19 C 0.03 1.65 5.47 84.65 0.46 2.12 16 20 N -0.93 -53.90 13.96 21.45 0.30 -53.60 16 21 Si 0.91 42.44 27.38 68.60 1.88 44.32 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.25 -11.16 6.68 99.48 0.66 -10.50 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H 0.06 2.75 5.62 -2.38 -0.01 2.74 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.10 2.96 6.74 -2.39 -0.02 2.94 16 29 H 0.07 2.49 6.87 -2.39 -0.02 2.48 16 30 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 31 H 0.09 2.21 6.43 -2.39 -0.02 2.19 16 32 H 0.09 1.25 7.85 -2.39 -0.02 1.23 16 33 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 2.03 6.52 -2.39 -0.02 2.02 16 40 H 0.07 2.53 7.30 -2.39 -0.02 2.52 16 41 H 0.03 1.43 7.52 -2.39 -0.02 1.41 16 42 H 0.04 1.73 5.89 -2.39 -0.01 1.71 16 43 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -66.69 346.82 -0.75 -67.44 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.95 Total: 17.32 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.15 Total: -7.94 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -2.97 Total: -129.65 kcal Atomic # 8 Polarization: -94.40 SS G_CDS: -5.42 Total: -99.83 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Atomic # 16 Polarization: 108.67 SS G_CDS: -0.34 Total: 108.33 kcal Total: -66.69 -0.75 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067716901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.483 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds