Wall clock time and date at job start Fri Apr 10 2020 17:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47289 * 2 1 4 4 C 1.46497 * 120.00215 * 84.99795 * 3 2 1 5 5 C 1.53001 * 109.47133 * 275.00057 * 4 3 2 6 6 H 1.09000 * 109.99254 * 58.91607 * 5 4 3 7 7 C 1.54106 * 109.87790 * 179.97438 * 5 4 3 8 8 C 1.54810 * 104.18526 * 121.45619 * 7 5 4 9 9 C 1.54991 * 102.09350 * 20.88072 * 8 7 5 10 10 O 1.43745 * 109.87879 * 297.82713 * 5 4 3 11 11 S 1.65602 * 120.00181 * 264.99705 * 3 2 1 12 12 O 1.42106 * 106.39889 * 23.54282 * 11 3 2 13 13 O 1.42095 * 106.40522 * 156.45812 * 11 3 2 14 14 N 1.65596 * 107.22022 * 270.00412 * 11 3 2 15 15 C 1.46497 * 119.99641 * 269.99664 * 14 11 3 16 16 C 1.46494 * 120.00296 * 89.99691 * 14 11 3 17 17 C 1.50700 * 109.47431 * 95.00097 * 16 14 11 18 18 H 1.08003 * 119.99561 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00224 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46833 * 60.00401 * 21 19 17 23 23 H 1.48505 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47436 * 300.00385 * 21 19 17 25 25 H 1.08995 * 109.47257 * 300.00261 * 1 2 3 26 26 H 1.09002 * 109.46772 * 60.00019 * 1 2 3 27 27 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47040 * 239.99747 * 2 1 3 29 29 H 1.09002 * 109.46772 * 119.99981 * 2 1 3 30 30 H 1.09002 * 109.47397 * 154.99856 * 4 3 2 31 31 H 1.09004 * 109.47076 * 35.00055 * 4 3 2 32 32 H 1.09000 * 110.48246 * 240.13228 * 7 5 4 33 33 H 1.08999 * 110.48882 * 2.77782 * 7 5 4 34 34 H 1.09005 * 110.90592 * 139.08047 * 8 7 5 35 35 H 1.09005 * 110.90412 * 262.68111 * 8 7 5 36 36 H 1.08993 * 110.62131 * 81.47823 * 9 8 7 37 37 H 1.09004 * 110.61350 * 204.31822 * 9 8 7 38 38 H 1.09004 * 109.47706 * 89.99994 * 15 14 11 39 39 H 1.09001 * 109.47515 * 210.00109 * 15 14 11 40 40 H 1.09003 * 109.47401 * 329.99693 * 15 14 11 41 41 H 1.09008 * 109.47280 * 215.00050 * 16 14 11 42 42 H 1.08993 * 109.47206 * 334.99992 * 16 14 11 43 43 H 0.96993 * 120.00949 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2638 5 6 0.8159 2.7383 1.6412 6 1 0.0549 1.9638 1.7372 7 6 0.9523 3.5059 2.9705 8 6 0.5462 4.9567 2.6142 9 6 -0.2765 4.7542 1.3164 10 8 0.4223 3.6885 0.6370 11 16 2.4123 2.1201 -1.4287 12 8 1.6869 1.4414 -2.4448 13 8 2.3059 3.5185 -1.1999 14 7 4.0145 1.8135 -1.7137 15 6 5.0373 2.7323 -1.2079 16 6 4.4091 0.6236 -2.4717 17 6 4.5916 0.9896 -3.9222 18 1 4.4302 2.0069 -4.2468 19 6 4.9655 0.0259 -4.8345 20 7 5.1625 -1.2128 -4.4392 21 14 5.1910 0.4794 -6.6326 22 1 6.2473 1.5164 -6.7528 23 1 5.5911 -0.7268 -7.4009 24 1 3.9135 1.0091 -7.1735 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9081 2.8917 1.1513 31 1 2.4690 1.4182 2.0480 32 1 0.2768 3.0936 3.7200 33 1 1.9825 3.4743 3.3253 34 1 -0.0695 5.3925 3.4011 35 1 1.4261 5.5716 2.4251 36 1 -1.2975 4.4542 1.5520 37 1 -0.2738 5.6630 0.7146 38 1 5.3433 2.4212 -0.2090 39 1 5.9005 2.7172 -1.8734 40 1 4.6294 3.7422 -1.1648 41 1 5.3465 0.2341 -2.0746 42 1 3.6334 -0.1369 -2.3837 43 1 5.4253 -1.8909 -5.0810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067716902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:30 Heat of formation + Delta-G solvation = -116.650011 kcal Electronic energy + Delta-G solvation = -25462.334978 eV Core-core repulsion = 21862.768020 eV Total energy + Delta-G solvation = -3599.566958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.49512 -36.48295 -36.25553 -35.37522 -34.86525 -32.37548 -32.17360 -31.15778 -29.12165 -27.70059 -25.25176 -24.87003 -22.57576 -22.17612 -21.86207 -20.99284 -18.44802 -17.33033 -16.63510 -16.37607 -16.27227 -15.95181 -15.32786 -15.19820 -14.72328 -14.12466 -13.75635 -13.64518 -13.45333 -13.23467 -13.12781 -12.65363 -12.36970 -12.11243 -12.09056 -11.91754 -11.70004 -11.49614 -11.42727 -11.30554 -11.15394 -11.07036 -10.94857 -10.93948 -10.64591 -10.61547 -10.52845 -10.36190 -9.96588 -9.71199 -9.58802 -8.76279 -8.38942 -7.95545 -6.01843 -4.05464 1.38435 3.37179 3.40279 3.45579 3.55568 3.98033 4.27788 4.47739 4.49589 4.64759 4.79673 4.96670 5.04782 5.09967 5.21921 5.32824 5.37025 5.44814 5.50047 5.52956 5.58641 5.62051 5.69800 5.73953 5.80145 5.85254 5.95772 5.95932 6.05710 6.15321 6.33166 6.43430 6.48869 6.61818 6.88483 7.07533 7.28654 7.48255 7.70030 7.96269 8.26401 8.96690 9.59450 11.06748 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.004497 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.805328 B = 6225.142224 C = 6513.373649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -1.006 6.006 4 C 0.132 3.868 5 C 0.050 3.950 6 H 0.073 0.927 7 C -0.150 4.150 8 C -0.154 4.154 9 C 0.045 3.955 10 O -0.347 6.347 11 S 2.779 3.221 12 O -0.965 6.965 13 O -0.974 6.974 14 N -1.002 6.002 15 C 0.096 3.904 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.897 5.897 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 6.537 17.762 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.843 5.843 4 C 0.005 3.995 5 C -0.010 4.010 6 H 0.091 0.909 7 C -0.188 4.188 8 C -0.192 4.192 9 C -0.032 4.032 10 O -0.265 6.265 11 S 2.787 3.213 12 O -0.949 6.949 13 O -0.958 6.958 14 N -0.844 5.844 15 C -0.050 4.050 16 C 0.136 3.864 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.827 6.807 16.908 19.836 hybrid contribution 0.361 -0.121 -0.467 0.602 sum -7.466 6.687 16.441 19.255 Atomic orbital electron populations 1.22305 0.96413 1.01843 1.02474 1.21203 0.94333 0.81726 1.03195 1.58297 1.80124 1.23173 1.22696 1.21393 0.95828 0.95430 0.86832 1.23435 0.97544 0.92457 0.87572 0.90902 1.22954 1.02808 0.95501 0.97557 1.23121 1.00998 0.96909 0.98128 1.23506 0.94962 0.91788 0.92944 1.89145 1.74685 1.33193 1.29517 1.02202 0.73237 0.73245 0.72594 1.93604 1.70790 1.75687 1.54774 1.93551 1.86292 1.30289 1.85683 1.57805 1.23478 1.36010 1.67088 1.21308 0.93315 0.92532 0.97873 1.19009 0.96521 0.80682 0.90233 1.21470 1.46419 0.95852 0.92943 0.92297 1.24918 0.95166 0.94799 0.99082 1.69902 1.47354 1.01378 1.35015 0.86592 0.78760 0.77766 0.84556 1.20178 1.21160 1.19965 0.92707 0.91717 0.91928 0.89571 0.91110 0.89837 0.89772 0.90776 0.90283 0.90632 0.90315 0.92814 0.89095 0.94612 0.90606 0.91636 0.94956 0.94682 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.02 37.16 0.37 -1.94 16 2 C 0.12 1.78 6.09 -4.04 -0.02 1.75 16 3 N -1.01 -16.35 2.78 -114.38 -0.32 -16.67 16 4 C 0.13 1.69 4.92 -4.04 -0.02 1.67 16 5 C 0.05 0.61 3.48 -26.15 -0.09 0.51 16 6 H 0.07 0.84 5.66 -51.93 -0.29 0.54 16 7 C -0.15 -1.32 6.64 -25.20 -0.17 -1.49 16 8 C -0.15 -1.39 7.15 -24.73 -0.18 -1.56 16 9 C 0.04 0.52 7.72 38.21 0.29 0.81 16 10 O -0.35 -5.43 9.19 -54.37 -0.50 -5.93 16 11 S 2.78 59.20 5.89 -107.50 -0.63 58.56 16 12 O -0.96 -24.43 16.08 -57.17 -0.92 -25.35 16 13 O -0.97 -21.41 13.90 -65.26 -0.91 -22.31 16 14 N -1.00 -21.86 3.23 -123.06 -0.40 -22.25 16 15 C 0.10 1.74 10.68 59.85 0.64 2.38 16 16 C 0.26 6.65 5.08 -5.20 -0.03 6.63 16 17 C -0.53 -15.24 9.38 -34.44 -0.32 -15.56 16 18 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.05 0.64 5.67 -51.93 -0.29 0.35 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 29 H 0.07 0.81 8.00 -51.93 -0.42 0.40 16 30 H 0.08 1.10 7.61 -51.93 -0.40 0.70 16 31 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.06 1.12 7.02 -51.93 -0.36 0.76 16 41 H 0.03 0.84 8.11 -51.92 -0.42 0.42 16 42 H 0.04 0.95 7.32 -51.93 -0.38 0.57 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -35.17 353.59 -9.36 -44.53 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.11 Total: -2.27 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.38 Total: -5.10 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.02 Total: -64.68 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -2.33 Total: -53.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 59.20 SS G_CDS: -0.63 Total: 58.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.17 -9.36 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067716902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.120 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds