Wall clock time and date at job start Fri Apr 10 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47289 * 2 1 4 4 C 1.46497 * 120.00215 * 84.99795 * 3 2 1 5 5 C 1.53001 * 109.47133 * 275.00057 * 4 3 2 6 6 H 1.09000 * 109.99254 * 58.91607 * 5 4 3 7 7 C 1.54106 * 109.87790 * 179.97438 * 5 4 3 8 8 C 1.54810 * 104.18526 * 121.45619 * 7 5 4 9 9 C 1.54991 * 102.09350 * 20.88072 * 8 7 5 10 10 O 1.43745 * 109.87879 * 297.82713 * 5 4 3 11 11 S 1.65602 * 120.00181 * 264.99705 * 3 2 1 12 12 O 1.42106 * 106.39889 * 23.54282 * 11 3 2 13 13 O 1.42095 * 106.40522 * 156.45812 * 11 3 2 14 14 N 1.65596 * 107.22022 * 270.00412 * 11 3 2 15 15 C 1.46497 * 119.99641 * 269.99664 * 14 11 3 16 16 C 1.46494 * 120.00296 * 89.99691 * 14 11 3 17 17 C 1.50700 * 109.47431 * 95.00097 * 16 14 11 18 18 H 1.08003 * 119.99561 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00224 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46833 * 60.00401 * 21 19 17 23 23 H 1.48505 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47436 * 300.00385 * 21 19 17 25 25 H 1.08995 * 109.47257 * 300.00261 * 1 2 3 26 26 H 1.09002 * 109.46772 * 60.00019 * 1 2 3 27 27 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47040 * 239.99747 * 2 1 3 29 29 H 1.09002 * 109.46772 * 119.99981 * 2 1 3 30 30 H 1.09002 * 109.47397 * 154.99856 * 4 3 2 31 31 H 1.09004 * 109.47076 * 35.00055 * 4 3 2 32 32 H 1.09000 * 110.48246 * 240.13228 * 7 5 4 33 33 H 1.08999 * 110.48882 * 2.77782 * 7 5 4 34 34 H 1.09005 * 110.90592 * 139.08047 * 8 7 5 35 35 H 1.09005 * 110.90412 * 262.68111 * 8 7 5 36 36 H 1.08993 * 110.62131 * 81.47823 * 9 8 7 37 37 H 1.09004 * 110.61350 * 204.31822 * 9 8 7 38 38 H 1.09004 * 109.47706 * 89.99994 * 15 14 11 39 39 H 1.09001 * 109.47515 * 210.00109 * 15 14 11 40 40 H 1.09003 * 109.47401 * 329.99693 * 15 14 11 41 41 H 1.09008 * 109.47280 * 215.00050 * 16 14 11 42 42 H 1.08993 * 109.47206 * 334.99992 * 16 14 11 43 43 H 0.96993 * 120.00949 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2638 5 6 0.8159 2.7383 1.6412 6 1 0.0549 1.9638 1.7372 7 6 0.9523 3.5059 2.9705 8 6 0.5462 4.9567 2.6142 9 6 -0.2765 4.7542 1.3164 10 8 0.4223 3.6885 0.6370 11 16 2.4123 2.1201 -1.4287 12 8 1.6869 1.4414 -2.4448 13 8 2.3059 3.5185 -1.1999 14 7 4.0145 1.8135 -1.7137 15 6 5.0373 2.7323 -1.2079 16 6 4.4091 0.6236 -2.4717 17 6 4.5916 0.9896 -3.9222 18 1 4.4302 2.0069 -4.2468 19 6 4.9655 0.0259 -4.8345 20 7 5.1625 -1.2128 -4.4392 21 14 5.1910 0.4794 -6.6326 22 1 6.2473 1.5164 -6.7528 23 1 5.5911 -0.7268 -7.4009 24 1 3.9135 1.0091 -7.1735 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9081 2.8917 1.1513 31 1 2.4690 1.4182 2.0480 32 1 0.2768 3.0936 3.7200 33 1 1.9825 3.4743 3.3253 34 1 -0.0695 5.3925 3.4011 35 1 1.4261 5.5716 2.4251 36 1 -1.2975 4.4542 1.5520 37 1 -0.2738 5.6630 0.7146 38 1 5.3433 2.4212 -0.2090 39 1 5.9005 2.7172 -1.8734 40 1 4.6294 3.7422 -1.1648 41 1 5.3465 0.2341 -2.0746 42 1 3.6334 -0.1369 -2.3837 43 1 5.4253 -1.8909 -5.0810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067716902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:29 Heat of formation + Delta-G solvation = -141.916538 kcal Electronic energy + Delta-G solvation = -25463.430617 eV Core-core repulsion = 21862.768020 eV Total energy + Delta-G solvation = -3600.662597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40184 -38.18996 -37.49041 -37.18763 -36.64877 -34.50762 -33.03480 -32.15531 -30.17188 -29.66054 -26.80788 -26.06608 -24.21071 -23.63163 -22.81754 -21.80807 -19.90529 -19.02261 -18.37437 -18.22054 -17.48751 -16.98395 -16.85815 -16.31004 -16.20824 -15.70145 -15.12661 -14.92600 -14.73474 -14.55457 -14.39015 -14.02314 -13.88044 -13.58581 -13.53821 -13.26213 -13.04444 -12.94022 -12.88551 -12.85485 -12.53428 -12.46853 -12.42703 -12.34687 -12.26320 -11.96976 -11.83380 -11.77245 -11.66129 -11.43324 -10.62670 -10.55887 -9.96451 -9.72961 -8.21367 -6.33547 -0.24313 1.37166 1.41338 1.48470 2.11815 2.39344 2.69621 3.08009 3.09254 3.50539 3.73517 3.83630 3.88501 4.06940 4.15014 4.21097 4.28020 4.32816 4.43184 4.54274 4.62039 4.69191 4.72599 4.77170 4.82298 4.88564 4.91187 4.99573 5.03520 5.06605 5.16580 5.19864 5.23638 5.29122 5.40546 5.45745 5.66303 5.72638 6.00068 6.10699 6.19504 6.73774 7.35040 8.85973 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.004497 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.805328 B = 6225.142224 C = 6513.373649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.998 5.998 4 C 0.121 3.879 5 C 0.041 3.959 6 H 0.080 0.920 7 C -0.142 4.142 8 C -0.148 4.148 9 C 0.033 3.967 10 O -0.394 6.394 11 S 2.788 3.212 12 O -1.016 7.016 13 O -0.987 6.987 14 N -1.010 6.010 15 C 0.090 3.910 16 C 0.274 3.726 17 C -0.553 4.553 18 H 0.047 0.953 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.279 1.279 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.014 0.986 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 6.678 20.121 22.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.838 5.838 4 C -0.004 4.004 5 C -0.018 4.018 6 H 0.097 0.903 7 C -0.180 4.180 8 C -0.186 4.186 9 C -0.044 4.044 10 O -0.314 6.314 11 S 2.797 3.203 12 O -1.000 7.000 13 O -0.970 6.970 14 N -0.851 5.851 15 C -0.055 4.055 16 C 0.150 3.850 17 C -0.592 4.592 18 H 0.065 0.935 19 C -0.185 4.185 20 N -0.562 5.562 21 Si 0.779 3.221 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.205 1.205 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.716 6.977 19.283 21.910 hybrid contribution 0.280 -0.145 -1.109 1.153 sum -7.436 6.833 18.174 20.791 Atomic orbital electron populations 1.22282 0.95496 1.03068 1.01788 1.21403 0.95145 0.80785 1.03652 1.57872 1.79637 1.23868 1.22394 1.21840 0.96620 0.96058 0.85896 1.23625 0.97018 0.92574 0.88620 0.90257 1.22960 1.04418 0.94510 0.96082 1.23106 1.00677 0.97384 0.97426 1.23718 0.95951 0.90765 0.93935 1.89101 1.75433 1.34746 1.32094 1.01618 0.72782 0.72822 0.73053 1.93529 1.72011 1.76559 1.57904 1.93523 1.86309 1.31124 1.86052 1.57722 1.24483 1.35409 1.67480 1.21527 0.92212 0.92288 0.99480 1.18571 0.95363 0.81629 0.89437 1.21797 1.46953 0.95542 0.94933 0.93480 1.25723 0.94737 0.94770 1.03304 1.69984 1.47597 1.02094 1.36496 0.85675 0.78687 0.78278 0.79500 1.18735 1.19672 1.20499 0.90429 0.95292 0.89773 0.92829 0.86803 0.90314 0.85583 0.88320 0.88856 0.88030 0.91092 0.91424 0.89993 0.90889 0.91341 0.90979 0.95461 0.96788 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 10.02 71.98 0.72 -3.65 16 2 C 0.12 3.27 6.09 86.38 0.53 3.80 16 3 N -1.00 -31.62 2.78 -515.79 -1.44 -33.05 16 4 C 0.12 2.79 4.92 86.38 0.43 3.21 16 5 C 0.04 0.89 3.48 30.97 0.11 1.00 16 6 H 0.08 1.59 5.66 -2.39 -0.01 1.57 16 7 C -0.14 -1.97 6.64 31.59 0.21 -1.76 16 8 C -0.15 -2.29 7.15 31.89 0.23 -2.06 16 9 C 0.03 0.72 7.72 72.66 0.56 1.28 16 10 O -0.39 -12.12 9.19 -130.68 -1.20 -13.32 16 11 S 2.79 121.59 5.89 -56.49 -0.33 121.26 16 12 O -1.02 -54.12 16.08 -128.00 -2.06 -56.18 16 13 O -0.99 -44.11 13.90 -120.26 -1.67 -45.78 16 14 N -1.01 -44.76 3.23 -543.24 -1.75 -46.51 16 15 C 0.09 3.21 10.68 127.77 1.36 4.58 16 16 C 0.27 14.55 5.08 85.63 0.43 14.99 16 17 C -0.55 -32.79 9.38 25.60 0.24 -32.55 16 18 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 19 C 0.01 0.84 5.46 84.65 0.46 1.30 16 20 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 21 Si 0.95 45.88 29.54 68.60 2.03 47.91 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 25 H 0.08 1.64 5.67 -2.39 -0.01 1.63 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.88 7.32 -2.38 -0.02 1.87 16 29 H 0.11 2.26 8.00 -2.39 -0.02 2.24 16 30 H 0.08 1.90 7.61 -2.39 -0.02 1.89 16 31 H 0.13 1.85 8.00 -2.39 -0.02 1.83 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.04 7.70 -2.39 -0.02 1.03 16 34 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 40 H 0.07 2.45 7.02 -2.39 -0.02 2.43 16 41 H 0.03 1.46 8.11 -2.38 -0.02 1.44 16 42 H 0.01 0.80 7.32 -2.39 -0.02 0.79 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -79.19 353.59 0.12 -79.07 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.98 Total: 11.28 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.28 Total: -9.86 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -2.90 Total: -134.38 kcal Atomic # 8 Polarization: -110.34 SS G_CDS: -4.93 Total: -115.27 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 121.59 SS G_CDS: -0.33 Total: 121.26 kcal Total: -79.19 0.12 -79.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067716902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.847 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds