Wall clock time and date at job start Fri Apr 10 2020 17:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.51596 * 2 1 4 4 C 1.53716 * 109.48585 * 120.26568 * 2 1 3 5 5 N 1.47152 * 108.16243 * 172.39306 * 4 2 1 6 6 S 1.65595 * 120.98232 * 129.42751 * 5 4 2 7 7 O 1.42102 * 106.40430 * 156.17915 * 6 5 4 8 8 O 1.42106 * 106.40003 * 23.26011 * 6 5 4 9 9 N 1.65601 * 107.22339 * 269.72362 * 6 5 4 10 10 C 1.46501 * 119.99800 * 269.99884 * 9 6 5 11 11 C 1.46493 * 120.00092 * 89.99385 * 9 6 5 12 12 C 1.50706 * 109.47128 * 95.00402 * 11 9 6 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.47149 * 118.03575 * 309.16283 * 5 4 2 21 21 C 1.53293 * 108.39112 * 50.78236 * 20 5 4 22 22 C 1.52997 * 109.51283 * 67.62095 * 21 20 5 23 23 C 1.52998 * 109.51596 * 187.72730 * 21 20 5 24 24 O 1.42964 * 109.22083 * 307.70191 * 21 20 5 25 25 H 1.08996 * 109.47319 * 180.10510 * 1 2 3 26 26 H 1.09001 * 109.46673 * 300.10010 * 1 2 3 27 27 H 1.08999 * 109.47111 * 60.09599 * 1 2 3 28 28 H 1.08997 * 109.83668 * 52.71460 * 4 2 1 29 29 H 1.08997 * 109.74232 * 292.02359 * 4 2 1 30 30 H 1.09002 * 109.47261 * 270.00037 * 10 9 6 31 31 H 1.09004 * 109.46860 * 29.99391 * 10 9 6 32 32 H 1.08999 * 109.46818 * 149.99558 * 10 9 6 33 33 H 1.09001 * 109.47786 * 335.00675 * 11 9 6 34 34 H 1.09006 * 109.47401 * 215.00260 * 11 9 6 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.09001 * 109.68165 * 170.50879 * 20 5 4 37 37 H 1.09007 * 109.67760 * 291.05428 * 20 5 4 38 38 H 1.08997 * 109.46718 * 60.00238 * 22 21 20 39 39 H 1.09000 * 109.47500 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47270 * 300.00757 * 22 21 20 41 41 H 1.09004 * 109.47035 * 59.99462 * 23 21 20 42 42 H 1.08994 * 109.47026 * 179.97438 * 23 21 20 43 43 H 1.09002 * 109.46874 * 300.00203 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0428 -0.7304 1.2516 5 7 3.5023 -0.8752 1.1325 6 16 4.5078 -0.4176 2.3661 7 8 5.7068 -1.1628 2.2039 8 8 3.7271 -0.4500 3.5531 9 7 4.9056 1.1696 2.1114 10 6 6.0864 1.5099 1.3138 11 6 4.0766 2.2334 2.6835 12 6 4.6615 2.6723 4.0012 13 1 5.5606 2.2052 4.3753 14 6 4.0489 3.6702 4.7292 15 7 2.9538 4.2386 4.2739 16 14 4.7736 4.2137 6.3628 17 1 3.9341 5.2930 6.9421 18 1 4.8105 3.0595 7.2965 19 1 6.1526 4.7212 6.1483 20 6 4.0415 -1.4441 -0.1128 21 6 3.4311 -0.6840 -1.2958 22 6 3.9519 0.7546 -1.3024 23 6 3.8220 -1.3750 -2.6037 24 8 2.0075 -0.6758 -1.1659 25 1 -0.3634 -1.0276 0.0019 26 1 -0.3633 0.5154 0.8891 27 1 -0.3633 0.5123 -0.8908 28 1 1.5806 -1.7151 1.3206 29 1 1.8029 -0.1486 2.1416 30 1 6.9560 1.5862 1.9666 31 1 6.2582 0.7326 0.5692 32 1 5.9235 2.4639 0.8124 33 1 3.0647 1.8604 2.8415 34 1 4.0487 3.0806 1.9981 35 1 2.5774 3.9561 3.4257 36 1 5.1260 -1.3352 -0.1267 37 1 3.7772 -2.4996 -0.1788 38 1 5.0377 0.7474 -1.3970 39 1 3.5172 1.2946 -2.1436 40 1 3.6716 1.2468 -0.3712 41 1 3.4491 -2.3993 -2.5990 42 1 3.3872 -0.8343 -3.4443 43 1 4.9077 -1.3841 -2.6995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068462621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:34 Heat of formation + Delta-G solvation = -145.223312 kcal Electronic energy + Delta-G solvation = -26069.039060 eV Core-core repulsion = 22468.233071 eV Total energy + Delta-G solvation = -3600.805989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00631 -38.53113 -37.48952 -37.02194 -35.92386 -35.39819 -34.71942 -31.60531 -29.40891 -28.39807 -28.04790 -26.69417 -25.95344 -24.46606 -22.92073 -20.70290 -20.12603 -19.45153 -18.62255 -18.48769 -17.88232 -17.27232 -16.42545 -16.30710 -15.71907 -15.66427 -15.52939 -15.43054 -15.01781 -14.33494 -14.28309 -14.12015 -13.66055 -13.57907 -13.46607 -13.43032 -13.25018 -13.20061 -13.01671 -12.99767 -12.86057 -12.81409 -12.79559 -12.46573 -12.44154 -12.35787 -12.04329 -11.94650 -11.42175 -11.27136 -11.13680 -10.58122 -9.85487 -9.80962 -8.67477 -6.41253 -0.56754 1.51050 1.58664 1.77840 1.81484 2.38133 2.54438 2.60994 3.10906 3.15458 3.55039 3.60997 3.83571 3.90041 3.94027 3.99251 4.17033 4.19750 4.29412 4.50636 4.56934 4.61529 4.65949 4.68444 4.71961 4.76395 4.80044 4.88310 4.92362 4.95602 5.00783 5.06445 5.16923 5.23999 5.27723 5.32437 5.42029 5.69114 5.84263 6.18015 6.22745 6.52228 7.34133 8.70368 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.005479 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.558476 B = 5109.561529 C = 5536.522445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.057 0.943 4 C 0.091 3.909 5 N -1.005 6.005 6 S 2.791 3.209 7 O -1.001 7.001 8 O -1.006 7.006 9 N -0.996 5.996 10 C 0.101 3.899 11 C 0.265 3.735 12 C -0.625 4.625 13 H 0.041 0.959 14 C -0.025 4.025 15 N -0.928 5.928 16 Si 1.107 2.893 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.266 1.266 20 C 0.093 3.907 21 C 0.098 3.902 22 C -0.184 4.184 23 C -0.131 4.131 24 O -0.370 6.370 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.009 0.991 34 H 0.024 0.976 35 H 0.259 0.741 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -9.539 -15.612 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.035 4.035 5 N -0.846 5.846 6 S 2.801 3.199 7 O -0.985 6.985 8 O -0.990 6.990 9 N -0.838 5.838 10 C -0.044 4.044 11 C 0.140 3.860 12 C -0.664 4.664 13 H 0.059 0.941 14 C -0.224 4.224 15 N -0.565 5.565 16 Si 0.929 3.071 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.032 4.032 21 C 0.057 3.943 22 C -0.242 4.242 23 C -0.189 4.189 24 O -0.290 6.290 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.027 0.973 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.348 -9.130 -13.764 16.521 hybrid contribution 0.179 -0.554 -0.972 1.133 sum -0.169 -9.684 -14.736 17.635 Atomic orbital electron populations 1.21733 0.90689 1.03831 1.03467 1.22522 0.96490 0.95050 0.84352 0.92474 1.22333 0.78861 1.02756 0.99543 1.58225 1.16821 1.77388 1.32200 1.01521 0.72612 0.72746 0.73038 1.93504 1.46953 1.71049 1.87012 1.93559 1.72043 1.87005 1.46346 1.57464 1.37010 1.23540 1.65743 1.21486 0.86239 1.02480 0.94236 1.18700 0.88790 0.85719 0.92749 1.22646 1.13341 1.23107 1.07329 0.94057 1.27111 0.94916 0.93857 1.06515 1.70935 1.20691 1.43115 1.21754 0.83059 0.75934 0.76431 0.71655 1.20124 1.20698 1.19111 1.22387 0.99501 0.98891 0.82405 1.22011 0.81108 0.95422 0.95747 1.22513 1.02876 0.96261 1.02520 1.21742 1.02805 1.00876 0.93435 1.87950 1.21015 1.77196 1.42831 0.90706 0.90418 0.90692 0.88964 0.90361 0.93805 0.89855 0.90201 0.97295 0.95794 0.93133 0.88197 0.89168 0.89894 0.90870 0.93442 0.91131 0.90919 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.57 71.98 0.69 -2.15 16 2 C 0.08 1.90 3.02 30.84 0.09 2.00 16 3 H 0.06 1.60 6.25 -2.39 -0.01 1.58 16 4 C 0.09 2.63 5.89 86.50 0.51 3.14 16 5 N -1.01 -31.06 2.91 -510.86 -1.49 -32.55 16 6 S 2.79 112.99 6.03 -56.49 -0.34 112.65 16 7 O -1.00 -41.37 16.01 -128.00 -2.05 -43.42 16 8 O -1.01 -49.88 15.90 -128.00 -2.04 -51.92 16 9 N -1.00 -40.89 3.23 -543.21 -1.75 -42.64 16 10 C 0.10 3.32 10.33 127.77 1.32 4.64 16 11 C 0.26 13.10 4.43 85.64 0.38 13.48 16 12 C -0.63 -35.67 9.38 25.60 0.24 -35.43 16 13 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 14 C -0.02 -1.41 5.46 84.65 0.46 -0.95 16 15 N -0.93 -55.41 13.65 21.45 0.29 -55.12 16 16 Si 1.11 51.06 29.90 68.60 2.05 53.11 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 C 0.09 2.23 5.23 86.35 0.45 2.68 16 21 C 0.10 2.05 1.11 -10.70 -0.01 2.04 16 22 C -0.18 -3.96 8.09 71.98 0.58 -3.38 16 23 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 24 O -0.37 -8.88 9.87 -148.98 -1.47 -10.35 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.08 2.62 7.24 -2.39 -0.02 2.60 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.17 7.47 -2.38 -0.02 2.15 16 32 H 0.08 2.39 7.94 -2.39 -0.02 2.37 16 33 H 0.01 0.48 7.48 -2.39 -0.02 0.46 16 34 H 0.02 1.18 7.83 -2.38 -0.02 1.17 16 35 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 36 H 0.10 2.25 7.24 -2.39 -0.02 2.24 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.26 6.11 -2.39 -0.01 1.24 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.78 352.02 -0.36 -73.14 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.08 Total: 12.30 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.35 Total: -15.21 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -2.95 Total: -130.30 kcal Atomic # 8 Polarization: -100.14 SS G_CDS: -5.56 Total: -105.69 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Atomic # 16 Polarization: 112.99 SS G_CDS: -0.34 Total: 112.65 kcal Total: -72.78 -0.36 -73.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068462621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.079 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds