Wall clock time and date at job start Fri Apr 10 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 116.99639 * 2 1 4 4 C 1.38701 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.38160 * 119.96897 * 180.02562 * 4 3 2 6 6 C 1.38758 * 120.27547 * 359.97438 * 5 4 3 7 7 C 1.38953 * 119.96789 * 359.83631 * 6 5 4 8 8 C 1.38481 * 120.00146 * 179.73066 * 3 2 1 9 9 N 1.39854 * 121.87714 * 180.30028 * 7 6 5 10 10 C 1.46903 * 110.99675 * 104.80134 * 9 7 6 11 11 C 1.50704 * 109.46546 * 180.36666 * 10 9 7 12 12 O 1.21296 * 120.00380 * 350.43095 * 11 10 9 13 13 N 1.34777 * 119.99670 * 170.42881 * 11 10 9 14 14 C 1.37106 * 119.99862 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99604 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99980 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99904 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47175 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47070 * 120.00026 * 18 16 14 21 21 H 1.48497 * 109.47680 * 239.99841 * 18 16 14 22 22 C 1.46752 * 112.13454 * 340.01019 * 9 7 6 23 23 C 1.53429 * 108.59446 * 50.26320 * 22 9 7 24 24 H 1.08998 * 109.77652 * 56.36624 * 23 22 9 25 25 C 1.53002 * 109.77233 * 177.11479 * 23 22 9 26 26 O 1.36252 * 118.67616 * 179.70776 * 6 5 4 27 27 H 1.09001 * 109.47300 * 299.99780 * 1 2 3 28 28 H 1.09001 * 109.47371 * 60.00569 * 1 2 3 29 29 H 1.09005 * 109.46766 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.01933 * 0.09905 * 4 3 2 31 31 H 1.07997 * 119.85996 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.89372 * 0.03165 * 8 3 2 33 33 H 1.08995 * 109.47337 * 300.36137 * 10 9 7 34 34 H 1.08994 * 109.47312 * 60.37295 * 10 9 7 35 35 H 0.96996 * 120.00168 * 0.02562 * 13 11 10 36 36 H 0.97001 * 120.00105 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.60921 * 169.99376 * 22 9 7 38 38 H 1.08990 * 109.61531 * 290.52585 * 22 9 7 39 39 H 1.09002 * 109.47396 * 59.99781 * 25 23 22 40 40 H 1.08996 * 109.46827 * 179.97438 * 25 23 22 41 41 H 1.09008 * 109.46864 * 299.99663 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3748 -0.0005 5 6 1.9187 3.6055 -0.0011 6 6 3.3040 3.6841 -0.0005 7 6 4.0652 2.5215 0.0040 8 6 3.4292 1.2842 0.0056 9 7 5.4633 2.5542 0.0109 10 6 5.9911 2.2170 1.3397 11 6 7.4969 2.2712 1.3106 12 8 8.0792 2.3897 0.2531 13 7 8.1965 2.1881 2.4595 14 6 9.5664 2.2379 2.4331 15 1 10.0848 2.3442 1.4916 16 6 10.2877 2.1517 3.6176 17 7 9.6569 2.0230 4.7632 18 14 12.1541 2.2189 3.5815 19 1 12.6171 2.3667 2.1783 20 1 12.6233 3.3786 4.3818 21 1 12.7059 0.9656 4.1559 22 6 5.9886 3.8439 -0.4520 23 6 5.2816 4.9656 0.3200 24 1 5.4153 4.8169 1.3915 25 6 5.8606 6.3210 -0.0906 26 8 3.8891 4.9145 -0.0072 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2123 2.3186 0.0007 31 1 1.3288 4.5101 -0.0011 32 1 4.0158 0.3773 0.0095 33 1 5.6160 2.9320 2.0718 34 1 5.6690 1.2127 1.6145 35 1 7.7309 2.0931 3.3051 36 1 10.1604 1.9624 5.5900 37 1 7.0614 3.8905 -0.2646 38 1 5.7956 3.9559 -1.5188 39 1 5.7125 6.4705 -1.1601 40 1 5.3548 7.1140 0.4602 41 1 6.9267 6.3442 0.1354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075858323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:41 Heat of formation + Delta-G solvation = -64.836435 kcal Electronic energy + Delta-G solvation = -25431.110183 eV Core-core repulsion = 21698.346079 eV Total energy + Delta-G solvation = -3732.764104 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18560 -39.48377 -38.31692 -36.54706 -35.77763 -33.96590 -32.15639 -31.36198 -30.57914 -28.88280 -27.60791 -27.14144 -25.25399 -24.06076 -22.74894 -22.43080 -20.19717 -19.21570 -18.20334 -18.01453 -17.51423 -16.69362 -16.28397 -15.81118 -15.57638 -15.10927 -14.88721 -14.66101 -14.51086 -14.17441 -13.72595 -13.62672 -13.27970 -13.09232 -13.04212 -12.53445 -12.46121 -12.29259 -12.10609 -11.82380 -11.66196 -11.58259 -11.31112 -11.15835 -11.04487 -10.64354 -10.40071 -10.31180 -10.27438 -9.54732 -9.37488 -8.39575 -8.07880 -7.94996 -7.59926 -6.50976 -3.92424 1.24719 1.49077 3.10022 3.14912 3.22603 3.29135 3.33057 3.63647 3.75628 3.94316 4.14672 4.62403 4.80194 4.84205 4.95424 4.96517 5.00298 5.06638 5.13435 5.16057 5.20263 5.30581 5.48626 5.54372 5.63728 5.73011 5.78497 5.88008 5.92881 6.07932 6.11699 6.12579 6.24834 6.33716 6.38010 6.42328 7.00353 7.26189 7.36394 7.46969 7.62083 7.95273 8.48913 9.07121 9.41517 9.91335 10.66203 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.003701 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.025671 B = 7563.616890 C = 8601.584110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.106 3.894 4 C -0.191 4.191 5 C -0.097 4.097 6 C 0.057 3.943 7 C 0.076 3.924 8 C -0.119 4.119 9 N -0.465 5.465 10 C 0.047 3.953 11 C 0.437 3.563 12 O -0.576 6.576 13 N -0.555 5.555 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.897 5.897 18 Si 0.931 3.069 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.010 3.990 23 C 0.045 3.955 24 H 0.072 0.928 25 C -0.138 4.138 26 O -0.312 6.312 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.273 0.727 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 2.547 -5.693 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.061 3.939 4 C -0.210 4.210 5 C -0.116 4.116 6 C 0.009 3.991 7 C -0.021 4.021 8 C -0.139 4.139 9 N -0.180 5.180 10 C -0.082 4.082 11 C 0.222 3.778 12 O -0.462 6.462 13 N -0.190 5.190 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.757 3.243 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.117 4.117 23 C -0.012 4.012 24 H 0.090 0.910 25 C -0.196 4.196 26 O -0.227 6.227 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.137 2.234 -6.549 17.558 hybrid contribution 0.181 0.449 1.179 1.275 sum -15.956 2.683 -5.370 17.047 Atomic orbital electron populations 1.23006 0.78784 1.03660 1.01149 1.86080 1.20967 1.26756 1.89309 1.18607 0.91779 0.84112 0.99416 1.20924 0.99709 0.91389 1.08999 1.20144 0.91083 0.97822 1.02583 1.18938 0.92226 0.84442 1.03458 1.18568 0.88820 0.91937 1.02814 1.19994 0.91086 0.97314 1.05554 1.58656 1.02825 1.31348 1.25145 1.22058 0.95680 1.02461 0.87958 1.19565 0.87601 0.85462 0.85126 1.90467 1.70562 1.55223 1.29951 1.41885 1.07275 1.62756 1.07126 1.19772 0.80875 1.47374 0.95111 0.87632 1.25300 1.00891 0.96939 0.94637 1.69621 1.36736 1.49353 0.98053 0.85782 0.81979 0.77818 0.78678 1.19114 1.20689 1.20641 1.23461 1.04429 0.84176 0.99625 1.23195 0.79658 0.98684 0.99697 0.90982 1.21695 1.01257 0.94167 1.02460 1.86254 1.25303 1.25670 1.85475 0.92815 0.92837 0.88480 0.85118 0.85131 0.84366 0.92927 0.88337 0.77338 0.91737 0.84355 0.89664 0.91546 0.91728 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.94 10.50 -19.66 -0.21 -4.15 16 3 C 0.11 1.44 6.68 -39.32 -0.26 1.18 16 4 C -0.19 -2.26 9.03 -39.44 -0.36 -2.62 16 5 C -0.10 -1.27 9.93 -39.42 -0.39 -1.66 16 6 C 0.06 0.89 6.47 -39.12 -0.25 0.64 16 7 C 0.08 1.26 5.12 -83.60 -0.43 0.83 16 8 C -0.12 -1.83 9.41 -39.16 -0.37 -2.20 16 9 N -0.46 -8.41 4.49 -172.20 -0.77 -9.18 16 10 C 0.05 0.87 5.18 -4.97 -0.03 0.84 16 11 C 0.44 9.97 7.14 -10.98 -0.08 9.89 16 12 O -0.58 -14.81 13.58 5.54 0.08 -14.73 16 13 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 14 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 15 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 18 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.01 0.17 4.85 -3.68 -0.02 0.16 16 23 C 0.05 0.69 3.44 -26.51 -0.09 0.60 16 24 H 0.07 1.15 6.81 -51.93 -0.35 0.80 16 25 C -0.14 -1.73 9.60 37.16 0.36 -1.38 16 26 O -0.31 -4.93 10.06 -20.55 -0.21 -5.13 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.05 0.91 6.91 -51.93 -0.36 0.55 16 34 H 0.10 1.70 7.86 -51.93 -0.41 1.29 16 35 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.14 2.74 5.01 -51.93 -0.26 2.48 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.53 338.08 -6.84 -37.37 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.30 Total: 12.18 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.17 Total: -0.20 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.11 Total: -45.86 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.34 Total: -24.01 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.53 -6.84 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075858323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.465 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds