Wall clock time and date at job start Fri Apr 10 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 116.99639 * 2 1 4 4 C 1.38701 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.38160 * 119.96897 * 180.02562 * 4 3 2 6 6 C 1.38758 * 120.27547 * 359.97438 * 5 4 3 7 7 C 1.38953 * 119.96789 * 359.83631 * 6 5 4 8 8 C 1.38481 * 120.00146 * 179.73066 * 3 2 1 9 9 N 1.39854 * 121.87714 * 180.30028 * 7 6 5 10 10 C 1.46903 * 110.99675 * 104.80134 * 9 7 6 11 11 C 1.50704 * 109.46546 * 180.36666 * 10 9 7 12 12 O 1.21296 * 120.00380 * 350.43095 * 11 10 9 13 13 N 1.34777 * 119.99670 * 170.42881 * 11 10 9 14 14 C 1.37106 * 119.99862 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99604 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99980 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99904 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47175 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47070 * 120.00026 * 18 16 14 21 21 H 1.48497 * 109.47680 * 239.99841 * 18 16 14 22 22 C 1.46752 * 112.13454 * 340.01019 * 9 7 6 23 23 C 1.53429 * 108.59446 * 50.26320 * 22 9 7 24 24 H 1.08998 * 109.77652 * 56.36624 * 23 22 9 25 25 C 1.53002 * 109.77233 * 177.11479 * 23 22 9 26 26 O 1.36252 * 118.67616 * 179.70776 * 6 5 4 27 27 H 1.09001 * 109.47300 * 299.99780 * 1 2 3 28 28 H 1.09001 * 109.47371 * 60.00569 * 1 2 3 29 29 H 1.09005 * 109.46766 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.01933 * 0.09905 * 4 3 2 31 31 H 1.07997 * 119.85996 * 180.02562 * 5 4 3 32 32 H 1.08007 * 119.89372 * 0.03165 * 8 3 2 33 33 H 1.08995 * 109.47337 * 300.36137 * 10 9 7 34 34 H 1.08994 * 109.47312 * 60.37295 * 10 9 7 35 35 H 0.96996 * 120.00168 * 0.02562 * 13 11 10 36 36 H 0.97001 * 120.00105 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.60921 * 169.99376 * 22 9 7 38 38 H 1.08990 * 109.61531 * 290.52585 * 22 9 7 39 39 H 1.09002 * 109.47396 * 59.99781 * 25 23 22 40 40 H 1.08996 * 109.46827 * 179.97438 * 25 23 22 41 41 H 1.09008 * 109.46864 * 299.99663 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3748 -0.0005 5 6 1.9187 3.6055 -0.0011 6 6 3.3040 3.6841 -0.0005 7 6 4.0652 2.5215 0.0040 8 6 3.4292 1.2842 0.0056 9 7 5.4633 2.5542 0.0109 10 6 5.9911 2.2170 1.3397 11 6 7.4969 2.2712 1.3106 12 8 8.0792 2.3897 0.2531 13 7 8.1965 2.1881 2.4595 14 6 9.5664 2.2379 2.4331 15 1 10.0848 2.3442 1.4916 16 6 10.2877 2.1517 3.6176 17 7 9.6569 2.0230 4.7632 18 14 12.1541 2.2189 3.5815 19 1 12.6171 2.3667 2.1783 20 1 12.6233 3.3786 4.3818 21 1 12.7059 0.9656 4.1559 22 6 5.9886 3.8439 -0.4520 23 6 5.2816 4.9656 0.3200 24 1 5.4153 4.8169 1.3915 25 6 5.8606 6.3210 -0.0906 26 8 3.8891 4.9145 -0.0072 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2123 2.3186 0.0007 31 1 1.3288 4.5101 -0.0011 32 1 4.0158 0.3773 0.0095 33 1 5.6160 2.9320 2.0718 34 1 5.6690 1.2127 1.6145 35 1 7.7309 2.0931 3.3051 36 1 10.1604 1.9624 5.5900 37 1 7.0614 3.8905 -0.2646 38 1 5.7956 3.9559 -1.5188 39 1 5.7125 6.4705 -1.1601 40 1 5.3548 7.1140 0.4602 41 1 6.9267 6.3442 0.1354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075858323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:41 Heat of formation + Delta-G solvation = -86.136536 kcal Electronic energy + Delta-G solvation = -25432.033824 eV Core-core repulsion = 21698.346079 eV Total energy + Delta-G solvation = -3733.687746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41150 -40.57309 -39.97933 -37.65977 -37.13373 -35.90060 -33.43454 -33.19291 -31.65823 -30.20013 -28.83465 -27.97846 -26.91185 -25.56856 -23.89029 -23.53931 -21.61049 -20.80852 -19.90098 -19.34081 -18.69820 -17.81555 -17.76915 -17.09977 -16.67558 -16.52422 -16.34015 -16.06529 -15.89951 -15.58943 -15.27432 -14.95585 -14.63910 -14.20919 -14.16518 -14.02022 -13.54397 -13.41146 -13.32868 -13.13347 -13.00903 -12.89214 -12.88229 -12.43530 -12.36795 -12.16780 -12.11150 -11.83842 -11.44664 -11.30457 -10.66228 -10.17801 -10.02072 -9.21105 -8.71544 -8.50057 -5.99336 0.15760 0.40115 1.34791 1.42444 1.56254 1.91528 2.14411 2.18044 2.30366 2.55650 2.79693 3.14341 3.16355 3.43827 3.77110 3.79346 3.94103 3.99750 4.03992 4.14305 4.25855 4.37934 4.38525 4.44768 4.48706 4.49194 4.63423 4.76844 4.78099 4.87472 4.93258 4.99145 5.11528 5.16032 5.26628 5.36824 5.39959 5.67033 5.93791 6.05624 6.33396 6.52126 6.52703 7.06897 7.46800 8.00223 8.67201 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.003701 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.025671 B = 7563.616890 C = 8601.584110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.109 3.891 4 C -0.175 4.175 5 C -0.091 4.091 6 C 0.035 3.965 7 C 0.056 3.944 8 C -0.137 4.137 9 N -0.481 5.481 10 C 0.061 3.939 11 C 0.441 3.559 12 O -0.607 6.607 13 N -0.564 5.564 14 C -0.332 4.332 15 H 0.084 0.916 16 C -0.010 4.010 17 N -0.918 5.918 18 Si 0.994 3.006 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.272 1.272 22 C 0.015 3.985 23 C 0.051 3.949 24 H 0.062 0.938 25 C -0.133 4.133 26 O -0.314 6.314 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.396 0.604 36 H 0.279 0.721 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.091 2.969 -5.501 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.063 3.937 4 C -0.194 4.194 5 C -0.110 4.110 6 C -0.012 4.012 7 C -0.041 4.041 8 C -0.158 4.158 9 N -0.197 5.197 10 C -0.067 4.067 11 C 0.228 3.772 12 O -0.494 6.494 13 N -0.200 5.200 14 C -0.461 4.461 15 H 0.102 0.898 16 C -0.210 4.210 17 N -0.558 5.558 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.112 4.112 23 C -0.007 4.007 24 H 0.079 0.921 25 C -0.191 4.191 26 O -0.229 6.229 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.407 2.651 -6.351 19.651 hybrid contribution 0.684 0.235 1.066 1.289 sum -17.722 2.886 -5.285 18.717 Atomic orbital electron populations 1.23379 0.76182 1.05587 1.02557 1.86073 1.23665 1.26290 1.88992 1.18680 0.91276 0.85310 0.98434 1.21313 1.01461 0.90080 1.06512 1.20510 0.90076 0.99367 1.01031 1.19244 0.93321 0.83936 1.04685 1.18598 0.87762 0.92903 1.04794 1.20010 0.92330 0.96570 1.06874 1.58630 1.04407 1.31955 1.24681 1.21885 0.92116 1.03545 0.89173 1.20269 0.89388 0.83418 0.84122 1.90450 1.71910 1.55997 1.31018 1.41912 1.06809 1.63562 1.07699 1.19732 0.82137 1.49457 0.94815 0.89799 1.26066 1.05032 0.95980 0.93967 1.69682 1.38317 1.49322 0.98497 0.84853 0.76689 0.78300 0.78409 1.19575 1.19546 1.19748 1.23271 1.02879 0.85129 0.99957 1.23135 0.79709 0.99206 0.98684 0.92051 1.21694 1.01113 0.93013 1.03273 1.86245 1.25023 1.25927 1.85698 0.91338 0.91304 0.86585 0.81306 0.82578 0.85488 0.91662 0.87157 0.77019 0.91179 0.87195 0.89722 0.90646 0.90090 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.62 10.50 -93.27 -0.98 -8.59 16 3 C 0.11 2.74 6.68 22.44 0.15 2.89 16 4 C -0.17 -3.53 9.03 22.36 0.20 -3.33 16 5 C -0.09 -2.10 9.93 22.38 0.22 -1.88 16 6 C 0.04 1.06 6.47 22.57 0.15 1.21 16 7 C 0.06 1.86 5.12 38.25 0.20 2.05 16 8 C -0.14 -4.19 9.41 22.54 0.21 -3.98 16 9 N -0.48 -17.89 4.49 -698.71 -3.14 -21.03 16 10 C 0.06 2.33 5.18 85.56 0.44 2.77 16 11 C 0.44 20.94 7.14 87.66 0.63 21.56 16 12 O -0.61 -32.66 13.58 -3.08 -0.04 -32.71 16 13 N -0.56 -28.56 5.29 -306.97 -1.62 -30.19 16 14 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 15 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 17 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 18 Si 0.99 42.08 29.55 68.60 2.03 44.11 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 C 0.01 0.53 4.85 86.48 0.42 0.95 16 23 C 0.05 1.55 3.44 30.74 0.11 1.66 16 24 H 0.06 2.00 6.81 -2.39 -0.02 1.98 16 25 C -0.13 -3.27 9.60 71.98 0.69 -2.58 16 26 O -0.31 -9.59 10.06 -96.43 -0.97 -10.56 16 27 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 29 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.17 2.08 6.29 -2.91 -0.02 2.06 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.07 2.30 6.91 -2.39 -0.02 2.28 16 34 H 0.11 3.89 7.86 -2.39 -0.02 3.87 16 35 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.11 4.61 5.01 -2.39 -0.01 4.59 16 38 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -67.11 338.08 1.70 -65.41 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.33 Total: 37.06 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.81 Total: 4.98 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -4.48 Total: -99.70 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.99 Total: -51.86 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -67.11 1.70 -65.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075858323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.723 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds