Wall clock time and date at job start Fri Apr 10 2020 17:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.46857 * 2 1 4 4 C 1.46898 * 111.00064 * 296.92103 * 3 2 1 5 5 C 1.50703 * 109.47125 * 288.20651 * 4 3 2 6 6 O 1.21298 * 120.00066 * 354.22654 * 5 4 3 7 7 N 1.34781 * 120.00204 * 174.22965 * 5 4 3 8 8 C 1.37096 * 119.99778 * 179.97438 * 7 5 4 9 9 H 1.07999 * 119.99987 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99692 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00010 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99990 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47309 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47130 * 120.00153 * 12 10 8 15 15 H 1.48497 * 109.47467 * 240.00029 * 12 10 8 16 16 C 1.46902 * 111.00014 * 60.87145 * 3 2 1 17 17 C 1.50698 * 109.46819 * 66.04740 * 16 3 2 18 18 C 1.38257 * 119.92889 * 270.02130 * 17 16 3 19 19 C 1.38237 * 120.14387 * 179.75197 * 18 17 16 20 20 C 1.38545 * 120.03192 * 0.42555 * 19 18 17 21 21 C 1.39273 * 119.82194 * 359.57731 * 20 19 18 22 22 C 1.38243 * 119.93176 * 89.99759 * 17 16 3 23 23 O 1.36507 * 108.63753 * 180.24834 * 21 20 19 24 24 C 1.43983 * 105.48529 * 342.71494 * 23 21 20 25 25 O 1.36495 * 131.53901 * 179.87924 * 20 19 18 26 26 H 1.09003 * 109.47371 * 62.09446 * 1 2 3 27 27 H 1.09000 * 109.47025 * 182.08820 * 1 2 3 28 28 H 1.08996 * 109.47267 * 302.08902 * 1 2 3 29 29 H 1.08998 * 109.47196 * 240.00326 * 2 1 3 30 30 H 1.08994 * 109.46944 * 120.00363 * 2 1 3 31 31 H 1.09000 * 109.47318 * 48.20507 * 4 3 2 32 32 H 1.09003 * 109.47098 * 168.20935 * 4 3 2 33 33 H 0.96999 * 119.99841 * 0.02562 * 7 5 4 34 34 H 0.97006 * 119.99960 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47371 * 306.04349 * 16 3 2 36 36 H 1.08998 * 109.46804 * 186.04265 * 16 3 2 37 37 H 1.08002 * 119.92656 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.98137 * 180.32942 * 19 18 17 39 39 H 1.07994 * 119.98212 * 0.02851 * 22 17 16 40 40 H 1.08999 * 110.57338 * 268.55781 * 24 23 21 41 41 H 1.08999 * 110.57458 * 145.67825 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6097 2.0883 -1.2228 5 6 2.3981 1.5610 -2.3939 6 8 3.2924 0.7618 -2.2125 7 7 2.1095 1.9773 -3.6429 8 6 2.8271 1.4979 -4.7081 9 1 3.6233 0.7864 -4.5465 10 6 2.5300 1.9276 -5.9957 11 7 1.5615 2.7938 -6.1922 12 14 3.5073 1.2739 -7.4472 13 1 4.5344 0.3175 -6.9621 14 1 2.5915 0.5807 -8.3886 15 1 4.1724 2.4034 -8.1452 16 6 1.5657 2.1038 1.1980 17 6 2.2055 1.4974 2.4202 18 6 1.5771 0.4610 3.0854 19 6 2.1626 -0.1020 4.2040 20 6 3.3773 0.3775 4.6666 21 6 4.0102 1.4216 3.9965 22 6 3.4197 1.9782 2.8736 23 8 5.1814 1.7052 4.6379 24 6 5.0624 1.1022 5.9399 25 8 4.1517 0.0072 5.7278 26 1 -0.3634 0.4810 -0.9082 27 1 -0.3633 -1.0270 0.0374 28 1 -0.3633 0.5459 0.8706 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5463 1.9241 -1.3972 32 1 1.7986 3.1557 -1.1087 33 1 1.3946 2.6167 -3.7879 34 1 1.3538 3.0935 -7.0911 35 1 0.4815 2.0265 1.2792 36 1 1.8504 3.1532 1.1217 37 1 0.6286 0.0880 2.7282 38 1 1.6720 -0.9151 4.7185 39 1 3.9083 2.7879 2.3521 40 1 4.6471 1.8127 6.6546 41 1 6.0300 0.7348 6.2818 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076668434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:46 Heat of formation + Delta-G solvation = -56.436137 kcal Electronic energy + Delta-G solvation = -24766.847241 eV Core-core repulsion = 21034.447401 eV Total energy + Delta-G solvation = -3732.399840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.27186 -39.30488 -38.04062 -36.42905 -36.35897 -33.81430 -31.53742 -31.21252 -30.45576 -29.98047 -27.45555 -26.04494 -25.05995 -24.24532 -23.05335 -22.43909 -20.50526 -18.90911 -18.07495 -17.76664 -17.62989 -17.49627 -16.34000 -15.93204 -15.81049 -15.24479 -14.60256 -14.52340 -14.31248 -13.97309 -13.93766 -13.69262 -13.61996 -13.18001 -13.10293 -12.86516 -12.84392 -12.14388 -11.98514 -11.74438 -11.55848 -11.47320 -11.25263 -11.09918 -11.04194 -10.77948 -10.43847 -10.31738 -10.18747 -9.45109 -8.92271 -8.42574 -8.17206 -7.91980 -7.76448 -6.38187 -3.78529 1.00950 1.14900 2.61550 3.18707 3.28009 3.29058 3.36038 3.40978 3.96809 4.12851 4.33323 4.38589 4.44454 4.63067 4.81625 4.85108 5.03355 5.08725 5.12425 5.25014 5.29439 5.38859 5.42176 5.49958 5.60646 5.65889 5.74588 5.88043 5.92722 6.00397 6.08286 6.13381 6.24561 6.30966 6.35983 6.46140 6.57060 7.00658 7.29536 7.38610 7.59001 8.11140 8.66864 9.22939 9.59615 10.12218 10.79846 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.002791 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.341040 B =10029.343632 C =10533.151603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.047 3.953 3 N -0.506 5.506 4 C 0.041 3.959 5 C 0.446 3.554 6 O -0.574 6.574 7 N -0.568 5.568 8 C -0.295 4.295 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 0.928 3.072 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.089 3.911 17 C -0.056 4.056 18 C -0.104 4.104 19 C -0.101 4.101 20 C 0.024 3.976 21 C 0.030 3.970 22 C -0.076 4.076 23 O -0.309 6.309 24 C 0.214 3.786 25 O -0.312 6.312 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.391 0.609 34 H 0.270 0.730 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -0.643 21.906 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.081 4.081 3 N -0.228 5.228 4 C -0.090 4.090 5 C 0.231 3.769 6 O -0.457 6.457 7 N -0.205 5.205 8 C -0.425 4.425 9 H 0.121 0.879 10 C -0.180 4.180 11 N -0.546 5.546 12 Si 0.755 3.245 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.039 4.039 17 C -0.057 4.057 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.020 4.020 21 C -0.014 4.014 22 C -0.095 4.095 23 O -0.225 6.225 24 C 0.102 3.898 25 O -0.229 6.229 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.224 0.776 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.530 -1.188 21.919 22.005 hybrid contribution -0.686 0.195 -0.704 1.002 sum -2.216 -0.992 21.215 21.354 Atomic orbital electron populations 1.22502 0.99055 1.02215 1.01723 1.22253 0.91751 0.90051 1.04020 1.61805 1.59330 1.02029 0.99679 1.21945 0.97961 0.98799 0.90329 1.19758 0.87302 0.86215 0.83618 1.90527 1.33526 1.36955 1.84695 1.41879 1.33108 1.40763 1.04800 1.19736 1.14738 1.23621 0.84407 0.87932 1.25237 0.97146 0.96768 0.98884 1.69622 1.30050 1.31953 1.22934 0.85824 0.79384 0.78630 0.80662 1.19239 1.20839 1.20801 1.21092 0.97167 0.97991 0.87618 1.19474 0.94079 0.96186 0.95923 1.20879 1.00683 0.96261 0.94430 1.19991 0.91789 1.02046 0.98144 1.19789 0.94414 0.96764 0.91026 1.19766 0.86253 0.97695 0.97736 1.19960 0.94396 1.01110 0.94019 1.87378 1.33631 1.74296 1.27211 1.25579 0.94950 0.83945 0.85364 1.87337 1.46625 1.40891 1.48019 0.92167 0.92137 0.92772 0.88977 0.90871 0.92788 0.89437 0.77588 0.92021 0.93096 0.89727 0.84613 0.84914 0.84480 0.90127 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 9.06 37.16 0.34 -2.08 16 2 C 0.05 0.72 5.36 -3.82 -0.02 0.70 16 3 N -0.51 -8.09 4.30 -237.52 -1.02 -9.11 16 4 C 0.04 0.70 5.33 -4.98 -0.03 0.68 16 5 C 0.45 10.42 7.38 -10.98 -0.08 10.34 16 6 O -0.57 -15.56 14.69 5.54 0.08 -15.48 16 7 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 8 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 9 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 10 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 11 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 12 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 C 0.09 1.08 4.88 -4.98 -0.02 1.05 16 17 C -0.06 -0.67 4.89 -104.61 -0.51 -1.19 16 18 C -0.10 -1.11 7.94 -39.57 -0.31 -1.42 16 19 C -0.10 -1.10 10.06 -39.47 -0.40 -1.50 16 20 C 0.02 0.30 7.15 -39.08 -0.28 0.03 16 21 C 0.03 0.39 7.15 -39.09 -0.28 0.11 16 22 C -0.08 -0.98 9.71 -39.47 -0.38 -1.36 16 23 O -0.31 -3.89 11.40 -45.71 -0.52 -4.41 16 24 C 0.21 1.89 8.89 101.05 0.90 2.79 16 25 O -0.31 -3.67 11.40 -45.67 -0.52 -4.19 16 26 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.56 5.33 -51.93 -0.28 0.28 16 29 H 0.09 1.77 6.56 -51.93 -0.34 1.43 16 30 H 0.07 1.06 6.10 -51.93 -0.32 0.74 16 31 H 0.05 0.84 5.93 -51.93 -0.31 0.53 16 32 H 0.09 1.35 7.81 -51.93 -0.41 0.95 16 33 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.05 0.53 5.93 -51.93 -0.31 0.23 16 36 H 0.08 0.94 7.80 -51.93 -0.41 0.54 16 37 H 0.14 1.20 6.93 -52.49 -0.36 0.83 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -33.00 336.63 -7.59 -40.59 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.00 Total: 9.41 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.23 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.35 Total: -47.37 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.96 Total: -24.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.00 -7.59 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.849 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds