Wall clock time and date at job start Fri Apr 10 2020 17:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.46857 * 2 1 4 4 C 1.46898 * 111.00064 * 296.92103 * 3 2 1 5 5 C 1.50703 * 109.47125 * 288.20651 * 4 3 2 6 6 O 1.21298 * 120.00066 * 354.22654 * 5 4 3 7 7 N 1.34781 * 120.00204 * 174.22965 * 5 4 3 8 8 C 1.37096 * 119.99778 * 179.97438 * 7 5 4 9 9 H 1.07999 * 119.99987 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99692 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00010 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99990 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47309 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47130 * 120.00153 * 12 10 8 15 15 H 1.48497 * 109.47467 * 240.00029 * 12 10 8 16 16 C 1.46902 * 111.00014 * 60.87145 * 3 2 1 17 17 C 1.50698 * 109.46819 * 66.04740 * 16 3 2 18 18 C 1.38257 * 119.92889 * 270.02130 * 17 16 3 19 19 C 1.38237 * 120.14387 * 179.75197 * 18 17 16 20 20 C 1.38545 * 120.03192 * 0.42555 * 19 18 17 21 21 C 1.39273 * 119.82194 * 359.57731 * 20 19 18 22 22 C 1.38243 * 119.93176 * 89.99759 * 17 16 3 23 23 O 1.36507 * 108.63753 * 180.24834 * 21 20 19 24 24 C 1.43983 * 105.48529 * 342.71494 * 23 21 20 25 25 O 1.36495 * 131.53901 * 179.87924 * 20 19 18 26 26 H 1.09003 * 109.47371 * 62.09446 * 1 2 3 27 27 H 1.09000 * 109.47025 * 182.08820 * 1 2 3 28 28 H 1.08996 * 109.47267 * 302.08902 * 1 2 3 29 29 H 1.08998 * 109.47196 * 240.00326 * 2 1 3 30 30 H 1.08994 * 109.46944 * 120.00363 * 2 1 3 31 31 H 1.09000 * 109.47318 * 48.20507 * 4 3 2 32 32 H 1.09003 * 109.47098 * 168.20935 * 4 3 2 33 33 H 0.96999 * 119.99841 * 0.02562 * 7 5 4 34 34 H 0.97006 * 119.99960 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47371 * 306.04349 * 16 3 2 36 36 H 1.08998 * 109.46804 * 186.04265 * 16 3 2 37 37 H 1.08002 * 119.92656 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.98137 * 180.32942 * 19 18 17 39 39 H 1.07994 * 119.98212 * 0.02851 * 22 17 16 40 40 H 1.08999 * 110.57338 * 268.55781 * 24 23 21 41 41 H 1.08999 * 110.57458 * 145.67825 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6097 2.0883 -1.2228 5 6 2.3981 1.5610 -2.3939 6 8 3.2924 0.7618 -2.2125 7 7 2.1095 1.9773 -3.6429 8 6 2.8271 1.4979 -4.7081 9 1 3.6233 0.7864 -4.5465 10 6 2.5300 1.9276 -5.9957 11 7 1.5615 2.7938 -6.1922 12 14 3.5073 1.2739 -7.4472 13 1 4.5344 0.3175 -6.9621 14 1 2.5915 0.5807 -8.3886 15 1 4.1724 2.4034 -8.1452 16 6 1.5657 2.1038 1.1980 17 6 2.2055 1.4974 2.4202 18 6 1.5771 0.4610 3.0854 19 6 2.1626 -0.1020 4.2040 20 6 3.3773 0.3775 4.6666 21 6 4.0102 1.4216 3.9965 22 6 3.4197 1.9782 2.8736 23 8 5.1814 1.7052 4.6379 24 6 5.0624 1.1022 5.9399 25 8 4.1517 0.0072 5.7278 26 1 -0.3634 0.4810 -0.9082 27 1 -0.3633 -1.0270 0.0374 28 1 -0.3633 0.5459 0.8706 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5463 1.9241 -1.3972 32 1 1.7986 3.1557 -1.1087 33 1 1.3946 2.6167 -3.7879 34 1 1.3538 3.0935 -7.0911 35 1 0.4815 2.0265 1.2792 36 1 1.8504 3.1532 1.1217 37 1 0.6286 0.0880 2.7282 38 1 1.6720 -0.9151 4.7185 39 1 3.9083 2.7879 2.3521 40 1 4.6471 1.8127 6.6546 41 1 6.0300 0.7348 6.2818 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076668434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:45 Heat of formation + Delta-G solvation = -80.269605 kcal Electronic energy + Delta-G solvation = -24767.880738 eV Core-core repulsion = 21034.447401 eV Total energy + Delta-G solvation = -3733.433336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.10850 -40.61887 -39.45775 -37.63880 -37.26684 -35.83277 -33.23639 -32.46556 -31.43834 -31.09983 -28.72258 -27.11001 -26.25238 -25.74285 -23.94109 -23.47216 -21.76296 -20.62500 -19.74669 -18.91013 -18.50521 -18.33961 -17.64717 -17.17018 -17.02965 -16.50612 -16.40460 -15.69027 -15.44334 -15.28557 -15.10492 -14.86511 -14.81494 -14.39461 -14.25908 -13.97888 -13.68133 -13.57095 -13.39969 -13.03616 -12.98304 -12.73633 -12.66473 -12.38871 -12.28867 -12.11025 -11.99131 -11.69837 -11.61785 -11.39007 -10.27182 -9.95901 -9.81511 -9.14998 -8.91953 -8.43724 -5.91595 0.10773 0.26178 1.37305 1.42131 1.56109 1.81693 2.12292 2.29450 2.46333 2.55384 3.03434 3.23630 3.51361 3.51699 3.80744 3.82869 4.01358 4.08757 4.21410 4.24840 4.28243 4.32284 4.33731 4.52021 4.54247 4.56238 4.65175 4.70228 4.72643 5.04339 5.07582 5.11759 5.18329 5.25939 5.36991 5.43985 5.47742 5.57801 5.94195 6.13720 6.16634 6.27551 6.65917 7.17912 7.62630 8.19810 8.73967 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.025864 B = 0.002791 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.341040 B =10029.343632 C =10533.151603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.055 3.945 5 C 0.443 3.557 6 O -0.617 6.617 7 N -0.578 5.578 8 C -0.328 4.328 9 H 0.075 0.925 10 C -0.013 4.013 11 N -0.921 5.921 12 Si 0.989 3.011 13 H -0.275 1.275 14 H -0.271 1.271 15 H -0.271 1.271 16 C 0.093 3.907 17 C -0.064 4.064 18 C -0.097 4.097 19 C -0.101 4.101 20 C 0.012 3.988 21 C 0.009 3.991 22 C -0.093 4.093 23 O -0.331 6.331 24 C 0.205 3.795 25 O -0.325 6.325 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.396 0.604 34 H 0.276 0.724 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 -0.512 23.017 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.077 4.077 3 N -0.254 5.254 4 C -0.076 4.076 5 C 0.231 3.769 6 O -0.502 6.502 7 N -0.216 5.216 8 C -0.458 4.458 9 H 0.093 0.907 10 C -0.213 4.213 11 N -0.563 5.563 12 Si 0.814 3.186 13 H -0.200 1.200 14 H -0.196 1.196 15 H -0.197 1.197 16 C -0.034 4.034 17 C -0.065 4.065 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.032 4.032 21 C -0.035 4.035 22 C -0.112 4.112 23 O -0.248 6.248 24 C 0.094 3.906 25 O -0.242 6.242 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.007 -1.036 23.052 23.270 hybrid contribution -0.180 0.134 -0.936 0.962 sum -3.187 -0.901 22.116 22.362 Atomic orbital electron populations 1.22411 0.96282 1.03439 1.02396 1.22106 0.93976 0.89592 1.02025 1.61677 1.60793 1.02519 1.00404 1.21791 0.97855 0.99605 0.88374 1.20899 0.86734 0.84775 0.84529 1.90497 1.35550 1.38679 1.85504 1.41942 1.33286 1.41224 1.05136 1.19642 1.15435 1.24593 0.86133 0.90671 1.25972 0.97909 0.96689 1.00708 1.69675 1.30563 1.32173 1.23880 0.84921 0.78032 0.78162 0.77536 1.20020 1.19583 1.19658 1.21151 0.98608 0.97956 0.85655 1.19546 0.93954 0.96849 0.96127 1.21156 1.01283 0.95242 0.93843 1.20346 0.91245 1.02281 0.98084 1.20088 0.95054 0.96779 0.91289 1.19975 0.86794 0.98479 0.98275 1.20094 0.95145 1.01557 0.94384 1.87332 1.33760 1.74906 1.28794 1.26084 0.96200 0.83948 0.84343 1.87302 1.46987 1.42084 1.47802 0.93364 0.90932 0.89840 0.93773 0.90078 0.90460 0.87174 0.77045 0.91407 0.90432 0.88797 0.82142 0.82536 0.85028 0.87675 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.10 9.06 71.98 0.65 -3.44 16 2 C 0.05 1.52 5.36 86.30 0.46 1.99 16 3 N -0.53 -16.36 4.30 -905.38 -3.89 -20.25 16 4 C 0.05 1.82 5.33 85.56 0.46 2.28 16 5 C 0.44 21.14 7.38 87.66 0.65 21.79 16 6 O -0.62 -34.80 14.69 -3.08 -0.05 -34.85 16 7 N -0.58 -29.73 5.29 -306.97 -1.62 -31.35 16 8 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 9 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 10 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 11 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 12 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 C 0.09 2.02 4.88 85.56 0.42 2.43 16 17 C -0.06 -1.43 4.89 -19.86 -0.10 -1.53 16 18 C -0.10 -1.81 7.94 22.27 0.18 -1.63 16 19 C -0.10 -1.98 10.06 22.34 0.22 -1.75 16 20 C 0.01 0.29 7.15 22.59 0.16 0.46 16 21 C 0.01 0.23 7.15 22.59 0.16 0.39 16 22 C -0.09 -2.38 9.71 22.34 0.22 -2.16 16 23 O -0.33 -8.31 11.40 -76.13 -0.87 -9.18 16 24 C 0.20 3.39 8.89 113.37 1.01 4.40 16 25 O -0.32 -7.28 11.40 -75.99 -0.87 -8.15 16 26 H 0.05 1.18 6.34 -2.39 -0.02 1.17 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.34 5.33 -2.39 -0.01 1.32 16 29 H 0.04 1.74 6.56 -2.39 -0.02 1.73 16 30 H 0.08 2.25 6.10 -2.39 -0.01 2.23 16 31 H 0.08 2.24 5.93 -2.39 -0.01 2.23 16 32 H 0.11 3.19 7.81 -2.39 -0.02 3.17 16 33 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 34 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 35 H 0.08 1.29 5.93 -2.39 -0.01 1.28 16 36 H 0.09 1.87 7.80 -2.39 -0.02 1.85 16 37 H 0.16 2.14 6.93 -2.91 -0.02 2.12 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.97 336.63 1.13 -72.84 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.35 Total: 30.09 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.77 Total: 4.92 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -5.23 Total: -101.25 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.78 Total: -52.17 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -73.97 1.13 -72.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.430 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds