Wall clock time and date at job start Fri Apr 10 2020 17:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46755 * 2 1 4 4 C 1.46504 * 119.99636 * 269.99493 * 3 2 1 5 5 C 1.50690 * 109.47283 * 270.00408 * 4 3 2 6 6 H 1.08001 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00315 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00414 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99675 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47210 * 89.99902 * 9 7 5 11 11 H 1.48500 * 109.47418 * 210.00142 * 9 7 5 12 12 H 1.48504 * 109.47081 * 330.00246 * 9 7 5 13 13 C 1.34768 * 120.00182 * 90.00310 * 3 2 1 14 14 O 1.21283 * 120.00022 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00151 * 359.97438 * 13 3 2 16 16 O 1.42904 * 109.47435 * 180.02562 * 15 13 3 17 17 C 1.35710 * 117.00085 * 180.02562 * 16 15 13 18 18 C 1.39004 * 119.90917 * 180.02562 * 17 16 15 19 19 C 1.37696 * 120.08537 * 180.02562 * 18 17 16 20 20 C 1.39738 * 119.91323 * 359.97438 * 19 18 17 21 21 C 1.47600 * 120.08720 * 180.02562 * 20 19 18 22 22 N 1.34784 * 119.99996 * 180.02562 * 21 20 19 23 23 O 1.21588 * 120.00146 * 359.97438 * 21 20 19 24 24 C 1.39735 * 119.82583 * 0.27592 * 20 19 18 25 25 C 1.37708 * 119.90544 * 359.46580 * 24 20 19 26 26 H 1.09002 * 109.47183 * 300.00442 * 1 2 3 27 27 H 1.08998 * 109.47457 * 60.00222 * 1 2 3 28 28 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47409 * 240.00043 * 2 1 3 30 30 H 1.09002 * 109.46899 * 119.99287 * 2 1 3 31 31 H 1.09006 * 109.47071 * 30.00852 * 4 3 2 32 32 H 1.09002 * 109.46852 * 149.99945 * 4 3 2 33 33 H 0.97003 * 120.00002 * 180.02562 * 8 7 5 34 34 H 1.09010 * 109.46993 * 60.00791 * 15 13 3 35 35 H 1.08996 * 109.47418 * 300.00561 * 15 13 3 36 36 H 1.07995 * 119.95399 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.04377 * 179.97438 * 19 18 17 38 38 H 0.97000 * 119.99339 * 359.97438 * 22 21 20 39 39 H 0.96995 * 120.00015 * 179.72403 * 22 21 20 40 40 H 1.07997 * 120.04683 * 179.73081 * 24 20 19 41 41 H 1.07996 * 119.95407 * 180.24853 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3915 2.1842 -3.2569 9 14 3.0130 3.4359 -3.9289 10 1 3.1155 4.8560 -3.5071 11 1 3.4066 3.3136 -5.3555 12 1 1.6134 2.9691 -3.7597 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9913 1.3065 2.4722 16 8 2.3004 2.1822 3.5584 17 6 2.1276 1.6931 4.8125 18 6 2.4095 2.4934 5.9135 19 6 2.2360 2.0008 7.1875 20 6 1.7753 0.6946 7.3728 21 6 1.5874 0.1627 8.7368 22 7 1.1434 -1.0976 8.9134 23 8 1.8339 0.8612 9.7010 24 6 1.4980 -0.1085 6.2634 25 6 1.6691 0.3934 4.9925 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 1.5816 1.6877 -2.0285 32 1 2.0954 3.1411 -1.1385 33 1 5.7178 2.5753 -4.0824 34 1 2.6214 0.4188 2.5302 35 1 0.9433 1.0126 2.5299 36 1 2.7651 3.5030 5.7694 37 1 2.4556 2.6230 8.0425 38 1 0.9471 -1.6549 8.1442 39 1 1.0237 -1.4484 9.8098 40 1 1.1460 -1.1200 6.4025 41 1 1.4512 -0.2253 4.1346 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077205060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:47 Heat of formation + Delta-G solvation = -107.972766 kcal Electronic energy + Delta-G solvation = -24240.941089 eV Core-core repulsion = 20506.306453 eV Total energy + Delta-G solvation = -3734.634636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66616 -40.86199 -40.03869 -38.01513 -37.03550 -34.89554 -34.82146 -32.25644 -31.95142 -31.37567 -30.33501 -28.56364 -24.92198 -24.46663 -24.26126 -23.40111 -21.58665 -20.11272 -19.68668 -19.13019 -18.79471 -18.10246 -17.61395 -17.39819 -17.25034 -16.44559 -16.10800 -16.04450 -15.78786 -15.42443 -15.11083 -14.86612 -14.72235 -14.44490 -14.38491 -13.97106 -13.84533 -13.57031 -13.43805 -13.33305 -13.16026 -12.55249 -12.42732 -12.22241 -12.03298 -11.94164 -11.82837 -11.74827 -11.20626 -10.84230 -10.74016 -10.69612 -10.13034 -9.50443 -9.34583 -8.34810 -6.40080 -0.15978 0.29631 1.31849 1.36981 1.44178 1.54717 1.65361 1.81847 2.30214 2.55350 2.62281 2.82220 2.99822 3.41632 3.71003 3.81936 3.92231 3.95543 4.03374 4.18292 4.19917 4.38953 4.41500 4.52570 4.63802 4.78391 4.87845 4.93807 5.01050 5.02930 5.05841 5.18984 5.29814 5.41817 5.46199 5.56279 5.61457 5.90750 6.18969 6.26297 6.45621 6.59665 6.61999 7.18270 7.31600 7.32456 8.81976 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002640 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.461260 B =10603.006596 C =11057.318775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.537 4.537 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.235 1.235 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.051 3.949 16 O -0.318 6.318 17 C 0.144 3.856 18 C -0.176 4.176 19 C -0.026 4.026 20 C -0.197 4.197 21 C 0.567 3.433 22 N -0.829 5.829 23 O -0.595 6.595 24 C -0.025 4.025 25 C -0.215 4.215 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.418 0.582 39 H 0.413 0.587 40 H 0.176 0.824 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 -13.613 18.037 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.049 0.951 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.158 1.158 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.026 4.026 16 O -0.230 6.230 17 C 0.098 3.902 18 C -0.195 4.195 19 C -0.045 4.045 20 C -0.200 4.200 21 C 0.354 3.646 22 N -0.393 5.393 23 O -0.477 6.477 24 C -0.043 4.043 25 C -0.233 4.233 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.193 0.807 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.161 -12.283 18.291 26.745 hybrid contribution 0.375 0.491 -0.863 1.062 sum -14.786 -11.792 17.428 25.717 Atomic orbital electron populations 1.22203 0.93627 1.04056 1.02286 1.21949 0.95877 0.80456 1.04743 1.47977 1.63895 1.15516 1.05098 1.19343 0.95002 0.93039 0.82291 1.21554 0.97074 1.32202 1.06684 0.95105 1.25847 0.96698 0.97167 0.99037 1.70042 1.17400 1.46504 1.24523 0.85746 0.80655 0.78915 0.77819 1.20539 1.19998 1.15756 1.20783 0.77908 0.86660 0.86271 1.90695 1.47051 1.20792 1.87856 1.22770 1.05080 0.92586 0.82187 1.86136 1.82125 1.42055 1.12712 1.19660 0.93313 0.93598 0.83628 1.20513 1.07203 1.01454 0.90308 1.21072 0.92777 0.94630 0.96069 1.19867 1.10480 0.96362 0.93290 1.18285 0.75610 0.82395 0.88317 1.43547 1.68431 1.13521 1.13835 1.90803 1.53605 1.59838 1.43448 1.21442 0.93025 1.00051 0.89811 1.21570 1.06991 0.94401 1.00332 0.91734 0.93600 0.88177 0.90430 0.87784 0.92650 0.96586 0.92268 0.86048 0.84820 0.85076 0.84525 0.74968 0.75511 0.80678 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.09 2.19 5.93 86.38 0.51 2.70 16 3 N -0.59 -22.16 2.46 -826.14 -2.03 -24.19 16 4 C 0.23 10.59 4.23 85.63 0.36 10.95 16 5 C -0.54 -30.95 9.94 25.60 0.25 -30.69 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 9 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.23 -9.60 6.54 99.48 0.65 -8.95 16 13 C 0.50 19.30 7.75 87.66 0.68 19.98 16 14 O -0.58 -30.14 16.08 16.00 0.26 -29.88 16 15 C 0.05 1.26 3.77 71.24 0.27 1.53 16 16 O -0.32 -9.62 9.66 -71.27 -0.69 -10.30 16 17 C 0.14 3.36 6.70 22.63 0.15 3.51 16 18 C -0.18 -4.20 9.97 22.33 0.22 -3.97 16 19 C -0.03 -0.57 9.58 22.50 0.22 -0.36 16 20 C -0.20 -3.45 5.88 -20.08 -0.12 -3.57 16 21 C 0.57 10.32 8.04 86.71 0.70 11.02 16 22 N -0.83 -6.39 8.82 -175.75 -1.55 -7.94 16 23 O -0.59 -16.48 17.18 -3.99 -0.07 -16.55 16 24 C -0.02 -0.28 9.53 22.51 0.21 -0.06 16 25 C -0.21 -3.09 9.01 22.33 0.20 -2.89 16 26 H 0.06 0.94 7.22 -2.39 -0.02 0.93 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.10 1.70 6.44 -2.39 -0.02 1.68 16 31 H 0.06 2.35 7.13 -2.38 -0.02 2.33 16 32 H 0.02 0.83 6.85 -2.39 -0.02 0.81 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 34 H 0.12 2.25 6.91 -2.38 -0.02 2.23 16 35 H 0.13 2.08 6.70 -2.39 -0.02 2.06 16 36 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.14 3.00 7.64 -2.91 -0.02 2.98 16 38 H 0.42 0.21 6.85 -92.71 -0.64 -0.43 16 39 H 0.41 2.30 8.93 -92.71 -0.83 1.48 16 40 H 0.18 0.22 6.39 -2.91 -0.02 0.20 16 41 H 0.17 1.29 6.28 -2.91 -0.02 1.27 16 Total: -1.00 -90.84 348.52 2.53 -88.31 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -0.43 Total: 6.63 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.86 Total: 7.20 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -3.28 Total: -91.15 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.50 Total: -56.74 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -90.84 2.53 -88.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077205060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.666 kcal (2) G-P(sol) polarization free energy of solvation -90.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds