Wall clock time and date at job start Fri Apr 10 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34945 * 126.03273 * 2 1 4 4 C 1.35320 * 107.74453 * 179.97438 * 3 2 1 5 5 C 1.50690 * 126.04287 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.47078 * 13.41645 * 5 4 3 7 7 O 1.42898 * 109.47429 * 133.41375 * 5 4 3 8 8 C 1.50700 * 109.47492 * 253.41622 * 5 4 3 9 9 O 1.21292 * 120.00094 * 259.97883 * 8 5 4 10 10 N 1.34779 * 119.99805 * 79.96978 * 8 5 4 11 11 C 1.37093 * 120.00217 * 355.73780 * 10 8 5 12 12 H 1.08001 * 119.99753 * 321.11748 * 11 10 8 13 13 C 1.38944 * 120.00523 * 141.12619 * 11 10 8 14 14 N 1.31408 * 120.00465 * 160.36876 * 13 11 10 15 15 Si 1.86802 * 119.99612 * 340.36590 * 13 11 10 16 16 H 1.48501 * 109.46973 * 95.34284 * 15 13 11 17 17 H 1.48500 * 109.47203 * 215.33682 * 15 13 11 18 18 H 1.48498 * 109.47305 * 335.34034 * 15 13 11 19 19 C 1.46497 * 119.99839 * 175.72935 * 10 8 5 20 20 C 1.50701 * 109.47145 * 90.00568 * 19 10 8 21 21 C 1.35361 * 126.90983 * 265.04391 * 20 19 10 22 22 N 1.33773 * 106.49391 * 179.97438 * 21 20 19 23 23 N 1.28640 * 108.88485 * 359.97438 * 22 21 20 24 24 N 1.28714 * 110.17914 * 0.02562 * 23 22 21 25 25 H 0.97006 * 125.86472 * 180.02562 * 24 23 22 26 26 C 1.39874 * 107.91741 * 0.25859 * 4 3 2 27 27 N 1.30838 * 108.20215 * 359.55480 * 26 4 3 28 28 H 1.09001 * 109.47285 * 90.00546 * 1 2 3 29 29 H 1.09003 * 109.47282 * 210.00416 * 1 2 3 30 30 H 1.09002 * 109.47342 * 330.00167 * 1 2 3 31 31 H 1.07999 * 126.13301 * 359.95368 * 3 2 1 32 32 H 0.96704 * 114.00143 * 55.41533 * 7 5 4 33 33 H 0.96996 * 120.00229 * 185.01415 * 14 13 11 34 34 H 1.09006 * 109.47516 * 330.00516 * 19 10 8 35 35 H 1.09000 * 109.47231 * 210.00613 * 19 10 8 36 36 H 1.07997 * 126.75286 * 359.93889 * 21 20 19 37 37 H 1.08001 * 125.89544 * 179.74047 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5453 0.0002 6 1 4.4801 2.5695 0.2379 7 8 5.6946 1.0716 0.9794 8 6 5.4128 1.5079 -1.3613 9 8 6.3802 0.8023 -1.5549 10 7 4.9145 2.2584 -2.3638 11 6 3.7702 2.9881 -2.1703 12 1 2.9577 2.5749 -1.5911 13 6 3.6555 4.2592 -2.7195 14 7 2.4694 4.8022 -2.8777 15 14 5.1877 5.1964 -3.2330 16 1 5.4340 4.9864 -4.6823 17 1 4.9938 6.6448 -2.9688 18 1 6.3533 4.7032 -2.4562 19 6 5.5958 2.2944 -3.6602 20 6 5.0510 1.2025 -4.5445 21 6 5.5650 -0.0381 -4.7147 22 7 4.7631 -0.6656 -5.5823 23 7 3.8152 0.1332 -5.9260 24 7 3.9492 1.2648 -5.3274 25 1 3.3609 2.0304 -5.4210 26 6 3.5346 -0.7321 -0.0051 27 7 2.2891 -1.1327 0.0008 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.9281 2.1194 -0.0007 32 1 5.9408 0.1427 0.8711 33 1 2.3835 5.6576 -3.3270 34 1 6.6653 2.1431 -3.5130 35 1 5.4275 3.2623 -4.1323 36 1 6.4489 -0.4416 -4.2433 37 1 4.4054 -1.3709 -0.0101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577653375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:04 Heat of formation + Delta-G solvation = 87.727013 kcal Electronic energy + Delta-G solvation = -26120.070227 eV Core-core repulsion = 22322.674178 eV Total energy + Delta-G solvation = -3797.396049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.28589 -42.31162 -40.64512 -37.74486 -36.63572 -34.40758 -34.09755 -34.03671 -32.90016 -31.70932 -28.98419 -27.88189 -27.00941 -25.79820 -23.94312 -23.03061 -22.13311 -21.82240 -20.83999 -19.90670 -19.09201 -18.42374 -17.84029 -17.59174 -16.80341 -16.62924 -16.30594 -16.11369 -15.69702 -15.40364 -15.32675 -14.98811 -14.75437 -14.53808 -14.25692 -13.77699 -13.64450 -13.49741 -13.36653 -13.09939 -12.74644 -12.63333 -12.53014 -12.12656 -11.99491 -11.81572 -11.58698 -11.49832 -11.10830 -10.57749 -10.37259 -10.15351 -9.83948 -9.29365 -8.46492 -6.15088 0.50507 0.90810 1.17629 1.38745 1.45853 1.47334 1.62036 1.68893 1.81729 1.97923 2.15494 2.61401 2.95268 3.53895 3.60937 3.67400 3.74497 3.97661 3.98241 4.17070 4.28701 4.31110 4.36508 4.41470 4.42498 4.53269 4.66382 4.68719 4.85326 5.15716 5.16063 5.34316 5.60338 5.90013 6.07857 6.09911 6.26791 6.66201 6.74030 6.95162 7.34802 7.39726 7.71832 8.61528 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.007261 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.793363 B = 3855.514380 C = 4438.240262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.377 5.377 3 C 0.090 3.910 4 C -0.272 4.272 5 C 0.196 3.804 6 H 0.125 0.875 7 O -0.547 6.547 8 C 0.465 3.535 9 O -0.596 6.596 10 N -0.462 5.462 11 C -0.350 4.350 12 H 0.106 0.894 13 C 0.045 3.955 14 N -0.882 5.882 15 Si 0.903 3.097 16 H -0.259 1.259 17 H -0.289 1.289 18 H -0.261 1.261 19 C 0.165 3.835 20 C -0.002 4.002 21 C -0.040 4.040 22 N -0.295 5.295 23 N -0.104 5.104 24 N -0.367 5.367 25 H 0.456 0.544 26 C 0.052 3.948 27 N -0.326 5.326 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.192 0.808 32 H 0.385 0.615 33 H 0.281 0.719 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.202 0.798 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 -1.371 3.258 3.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.159 5.159 3 C -0.058 4.058 4 C -0.284 4.284 5 C 0.133 3.867 6 H 0.142 0.858 7 O -0.353 6.353 8 C 0.255 3.745 9 O -0.480 6.480 10 N -0.184 5.184 11 C -0.477 4.477 12 H 0.124 0.876 13 C -0.162 4.162 14 N -0.518 5.518 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.216 1.216 18 H -0.185 1.185 19 C 0.040 3.960 20 C -0.138 4.138 21 C -0.198 4.198 22 N -0.161 5.161 23 N -0.085 5.085 24 N -0.089 5.089 25 H 0.303 0.697 26 C -0.133 4.133 27 N -0.148 5.148 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.209 0.791 32 H 0.235 0.765 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.218 0.782 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.886 -2.889 2.398 4.735 hybrid contribution 1.170 2.014 -0.073 2.330 sum -1.717 -0.874 2.325 3.020 Atomic orbital electron populations 1.22182 0.72033 1.06172 1.04194 1.48773 1.07906 1.03150 1.56041 1.22635 0.90473 0.94135 0.98578 1.20306 0.94842 0.94106 1.19156 1.19535 0.84340 0.97938 0.84880 0.85777 1.86516 1.64128 1.33228 1.51387 1.21719 0.83760 0.81613 0.87454 1.90532 1.29485 1.44119 1.83891 1.43786 1.24726 1.42838 1.07075 1.19335 0.93178 0.96739 1.38454 0.87627 1.25725 0.97726 0.96417 0.96312 1.69692 1.23395 1.19449 1.39218 0.86491 0.82354 0.78789 0.79424 1.18467 1.21589 1.18464 1.20255 0.98279 0.93996 0.83479 1.22781 0.91467 1.00441 0.99080 1.23643 1.03594 0.91665 1.00941 1.74984 1.02139 1.25012 1.14013 1.78113 1.20016 0.90823 1.19532 1.45065 1.20450 1.13980 1.29415 0.69696 1.23865 0.95655 0.94621 0.99180 1.77221 1.01928 1.09529 1.26118 0.90605 0.88250 0.86789 0.79138 0.76542 0.90838 0.87182 0.90140 0.78157 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.90 11.47 127.77 1.47 3.37 16 2 N -0.38 -11.40 4.01 -369.55 -1.48 -12.89 16 3 C 0.09 2.86 9.67 83.54 0.81 3.67 16 4 C -0.27 -9.28 4.63 -20.15 -0.09 -9.37 16 5 C 0.20 7.04 3.09 29.10 0.09 7.13 16 6 H 0.12 4.52 7.46 -2.38 -0.02 4.50 16 7 O -0.55 -18.56 13.06 -130.75 -1.71 -20.27 16 8 C 0.46 18.64 6.88 87.66 0.60 19.24 16 9 O -0.60 -25.26 16.05 15.16 0.24 -25.01 16 10 N -0.46 -18.48 2.15 -639.60 -1.37 -19.86 16 11 C -0.35 -14.70 8.58 84.04 0.72 -13.98 16 12 H 0.11 4.58 4.52 -2.91 -0.01 4.56 16 13 C 0.04 1.91 5.34 84.93 0.45 2.36 16 14 N -0.88 -39.91 13.95 21.66 0.30 -39.61 16 15 Si 0.90 34.37 24.92 68.60 1.71 36.08 16 16 H -0.26 -9.13 6.71 99.48 0.67 -8.46 16 17 H -0.29 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 C 0.16 6.07 4.72 85.63 0.40 6.47 16 20 C 0.00 -0.06 6.89 41.36 0.28 0.23 16 21 C -0.04 -1.47 11.99 83.73 1.00 -0.47 16 22 N -0.29 -11.61 12.41 -58.25 -0.72 -12.33 16 23 N -0.10 -4.00 13.38 37.02 0.50 -3.50 16 24 N -0.37 -12.98 6.98 -47.78 -0.33 -13.32 16 25 H 0.46 14.49 8.96 -219.95 -1.97 12.52 16 26 C 0.05 1.76 11.44 85.24 0.98 2.73 16 27 N -0.33 -11.22 12.58 -57.02 -0.72 -11.94 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.19 5.61 7.30 -2.91 -0.02 5.59 16 32 H 0.39 11.13 8.16 -74.05 -0.60 10.52 16 33 H 0.28 12.10 8.32 -92.71 -0.77 11.33 16 34 H 0.11 3.87 7.49 -2.38 -0.02 3.85 16 35 H 0.08 2.90 3.23 -2.39 -0.01 2.89 16 36 H 0.20 6.65 8.06 -2.91 -0.02 6.62 16 37 H 0.19 5.58 7.90 -2.91 -0.02 5.56 16 Total: -1.00 -58.64 320.94 1.68 -56.96 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -1.45 Total: 44.30 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 6.72 Total: 21.38 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -3.83 Total: -113.44 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.46 Total: -45.28 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 1.71 Total: 36.08 kcal Total: -58.64 1.68 -56.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577653375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.683 kcal (2) G-P(sol) polarization free energy of solvation -58.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds