Wall clock time and date at job start Fri Apr 10 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99770 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99720 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99651 * 179.97438 * 11 9 8 14 14 H 1.48491 * 109.47115 * 89.99974 * 13 11 9 15 15 H 1.48509 * 109.46780 * 210.00159 * 13 11 9 16 16 H 1.48497 * 109.46888 * 329.99916 * 13 11 9 17 17 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 18 18 C 1.34516 * 126.74296 * 35.00460 * 17 2 1 19 19 N 1.30675 * 108.28749 * 179.97438 * 18 17 2 20 20 C 1.33954 * 109.78315 * 359.97438 * 19 18 17 21 21 C 1.48487 * 125.65024 * 180.02562 * 20 19 18 22 22 N 1.34046 * 126.67215 * 179.97438 * 21 20 19 23 23 N 1.28990 * 107.26410 * 179.97438 * 22 21 20 24 24 N 1.28723 * 108.94264 * 0.02562 * 23 22 21 25 25 H 0.97007 * 125.34160 * 179.97438 * 24 23 22 26 26 N 1.28871 * 109.31865 * 359.76362 * 24 23 22 27 27 N 1.31472 * 108.70640 * 359.75367 * 20 19 18 28 28 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 29 29 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 30 30 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 32 32 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 33 33 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 34 34 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 35 35 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 36 36 H 0.96999 * 120.00239 * 180.02562 * 12 11 9 37 37 H 1.07998 * 125.85751 * 359.93703 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 6 1.6946 -0.2128 -4.8999 9 6 2.2016 -0.9200 -6.1303 10 1 2.8226 -1.7981 -6.0311 11 6 1.8727 -0.4460 -7.3826 12 7 1.1169 0.6235 -7.5033 13 14 2.5017 -1.3223 -8.9078 14 1 1.5260 -2.3637 -9.3181 15 1 2.6699 -0.3401 -10.0089 16 1 3.8093 -1.9594 -8.6086 17 7 2.0183 -0.6905 1.1963 18 6 1.4541 -1.7525 1.7991 19 7 2.1871 -2.0751 2.8318 20 6 3.2321 -1.2422 2.9239 21 6 4.2882 -1.2908 3.9666 22 7 5.3416 -0.4693 4.0780 23 7 6.0137 -0.8468 5.1123 24 7 5.4269 -1.8614 5.6445 25 1 5.7309 -2.3346 6.4348 26 7 4.3697 -2.1471 4.9652 27 7 3.1711 -0.3781 1.9349 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.1493 0.5388 -2.5436 32 1 3.2901 -0.9367 -3.6464 33 1 1.8372 -1.9650 -3.6549 34 1 0.6047 -0.2133 -4.9041 35 1 2.0576 0.8151 -4.8957 36 1 0.8852 0.9567 -8.3844 37 1 0.5501 -2.2523 1.4842 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603015270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:28 Heat of formation + Delta-G solvation = 180.716591 kcal Electronic energy + Delta-G solvation = -23555.811397 eV Core-core repulsion = 19794.740430 eV Total energy + Delta-G solvation = -3761.070967 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.77784 -42.39139 -39.63269 -35.54573 -35.04820 -34.62062 -33.54940 -32.94297 -31.71768 -30.56954 -29.36969 -25.87324 -25.30988 -24.95097 -24.29090 -22.30877 -21.35214 -21.10417 -20.20589 -19.41908 -17.81116 -17.49460 -17.23778 -16.45306 -16.09846 -15.40331 -15.38314 -15.16649 -14.68957 -14.51638 -14.18634 -13.84686 -13.43336 -12.94976 -12.72412 -12.64780 -12.56038 -12.36879 -11.79893 -11.74019 -11.47445 -11.43422 -11.30850 -11.10272 -10.71473 -10.45614 -10.40402 -10.32398 -9.91943 -9.74791 -9.49054 -9.24733 -8.74367 -8.47350 -6.16508 -4.19674 0.62961 1.05071 1.57122 1.77174 2.04979 2.59105 2.92942 3.05880 3.25243 3.30524 3.32880 3.38843 3.68638 4.19437 4.32693 4.35792 4.47797 4.64400 4.74704 4.97372 5.08407 5.15805 5.20943 5.21859 5.54446 5.79493 5.94213 6.05067 6.15674 6.20310 6.44607 6.57409 6.66669 7.39601 7.50142 7.65982 7.70224 7.81206 7.87858 8.16114 8.32220 8.85895 9.45800 10.94903 Molecular weight = 306.13amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.002324 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.388466 B =12047.009709 C =12590.459174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.136 0.864 4 C 0.494 3.506 5 O -0.531 6.531 6 N -0.711 5.711 7 C 0.122 3.878 8 C 0.013 3.987 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.349 5.349 18 C 0.279 3.721 19 N -0.514 5.514 20 C 0.295 3.705 21 C 0.266 3.734 22 N -0.242 5.242 23 N -0.048 5.048 24 N -0.225 5.225 25 H 0.478 0.522 26 N -0.255 5.255 27 N -0.251 5.251 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.400 0.600 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -1.151 24.269 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.153 0.847 4 C 0.276 3.724 5 O -0.407 6.407 6 N -0.362 5.362 7 C 0.000 4.000 8 C -0.024 4.024 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 N -0.140 5.140 18 C -0.018 4.018 19 N -0.241 5.241 20 C 0.012 3.988 21 C -0.017 4.017 22 N -0.117 5.117 23 N -0.044 5.044 24 N -0.072 5.072 25 H 0.333 0.667 26 N -0.109 5.109 27 N -0.082 5.082 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.064 -1.213 24.490 24.520 hybrid contribution -0.355 -0.541 -0.998 1.190 sum -0.291 -1.755 23.492 23.559 Atomic orbital electron populations 1.22206 0.89677 1.04795 1.05370 1.21448 0.96610 0.98355 0.80876 0.84677 1.20411 0.81669 0.85457 0.84816 1.90774 1.37420 1.26088 1.86428 1.46274 1.52329 1.31876 1.05694 1.21825 0.98739 0.96391 0.83064 1.19332 0.97014 0.96088 0.89994 1.21021 1.32130 1.12682 0.90378 0.92248 1.24988 0.94961 0.94977 0.99291 1.69941 1.36636 1.22746 1.23868 0.86507 0.79406 0.79342 0.82287 1.20519 1.21114 1.19722 1.50165 1.17748 1.24418 1.21629 1.25959 0.99200 0.87631 0.88969 1.70498 1.05657 1.27104 1.20886 1.19511 0.92933 0.93555 0.92820 1.21315 0.94479 0.92036 0.93865 1.76246 1.03725 1.21926 1.09769 1.78995 1.19813 1.01154 1.04394 1.47821 1.14366 1.21369 1.23676 0.66689 1.75082 1.06037 1.23354 1.06430 1.78408 1.01665 1.22344 1.05809 0.89943 0.88305 0.90490 0.76575 0.92308 0.92234 0.95809 0.95814 0.92768 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.75 37.16 0.33 -0.66 16 2 C 0.13 1.38 3.76 -69.08 -0.26 1.12 16 3 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.49 7.31 7.22 -10.99 -0.08 7.23 16 5 O -0.53 -10.40 16.42 5.55 0.09 -10.31 16 6 N -0.71 -10.59 5.45 -60.29 -0.33 -10.92 16 7 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 8 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 9 C -0.52 -13.99 9.11 -34.44 -0.31 -14.31 16 10 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 13 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 N -0.35 -4.43 3.04 -57.26 -0.17 -4.60 16 18 C 0.28 3.20 11.75 -90.71 -1.07 2.14 16 19 N -0.51 -7.21 11.21 -12.37 -0.14 -7.35 16 20 C 0.29 4.46 8.08 -156.63 -1.27 3.19 16 21 C 0.27 3.73 8.31 -156.30 -1.30 2.43 16 22 N -0.24 -3.37 12.54 32.16 0.40 -2.97 16 23 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 24 N -0.23 -1.76 7.90 60.35 0.48 -1.28 16 25 H 0.48 1.09 8.96 -340.37 -3.05 -1.96 16 26 N -0.25 -2.91 12.40 32.18 0.40 -2.51 16 27 N -0.25 -3.89 12.74 32.11 0.41 -3.48 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.08 0.43 7.21 -51.93 -0.37 0.05 16 31 H 0.40 4.75 7.89 -40.82 -0.32 4.43 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 37 H 0.23 1.54 7.31 -52.49 -0.38 1.15 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -37.24 336.29 -8.09 -45.33 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -6.60 Total: -3.84 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -4.22 Total: 5.20 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 2.60 Total: -57.33 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.24 -8.09 -45.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603015270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.043 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds