Wall clock time and date at job start Fri Apr 10 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37354 * 125.83397 * 2 1 4 4 N 1.29408 * 108.82927 * 179.77436 * 3 2 1 5 5 N 1.40171 * 108.13685 * 0.38258 * 4 3 2 6 6 C 1.46499 * 126.34749 * 179.88043 * 5 4 3 7 7 C 1.53004 * 109.47198 * 269.68647 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21303 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.40595 * 119.99527 * 179.72943 * 10 8 7 12 12 C 1.40649 * 126.08553 * 359.68015 * 11 10 8 13 13 N 1.30904 * 108.38874 * 179.82002 * 12 11 10 14 14 N 1.40074 * 108.40725 * 0.44423 * 13 12 11 15 15 C 1.37320 * 126.07083 * 179.69504 * 14 13 12 16 16 H 1.08008 * 119.99803 * 180.02562 * 15 14 13 17 17 C 1.38983 * 120.00073 * 0.02677 * 15 14 13 18 18 N 1.31295 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47561 * 89.99678 * 19 17 15 21 21 H 1.48498 * 109.47039 * 209.99964 * 19 17 15 22 22 H 1.48503 * 109.47029 * 329.99587 * 19 17 15 23 23 C 1.35679 * 126.07814 * 179.97438 * 11 10 8 24 24 C 1.34818 * 125.82916 * 180.02562 * 2 1 3 25 25 O 1.21818 * 126.30185 * 359.97253 * 24 2 1 26 26 H 1.09000 * 109.46889 * 269.97989 * 1 2 3 27 27 H 1.09004 * 109.47171 * 29.97794 * 1 2 3 28 28 H 1.09001 * 109.47544 * 149.97687 * 1 2 3 29 29 H 1.07999 * 125.58856 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.47424 * 149.69007 * 6 5 4 31 31 H 1.08998 * 109.47492 * 29.68583 * 6 5 4 32 32 H 1.09009 * 109.46730 * 59.99787 * 7 6 5 33 33 H 1.08998 * 109.46846 * 300.00332 * 7 6 5 34 34 H 0.97001 * 120.00485 * 359.71840 * 10 8 7 35 35 H 1.08000 * 125.80217 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99896 * 180.02562 * 18 17 15 37 37 H 1.07996 * 126.24933 * 359.97377 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7351 0.0048 5 7 3.5344 -0.6663 -0.0008 6 6 4.7313 -1.5111 -0.0005 7 6 5.1478 -1.8058 -1.4429 8 6 6.3794 -2.6743 -1.4427 9 8 6.8755 -3.0228 -0.3921 10 7 6.9331 -3.0586 -2.6098 11 6 8.0854 -3.8642 -2.6095 12 6 8.7666 -4.3353 -1.4727 13 7 9.7857 -5.0542 -1.8704 14 7 9.8017 -5.0622 -3.2710 15 6 10.7208 -5.7024 -4.0654 16 1 10.6396 -5.6428 -5.1408 17 6 11.7554 -6.4270 -3.4857 18 7 11.8543 -6.4990 -2.1785 19 14 13.0061 -7.2972 -4.5664 20 1 14.1393 -6.3801 -4.8492 21 1 13.5102 -8.5055 -3.8656 22 1 12.3630 -7.6980 -5.8435 23 6 8.7414 -4.3207 -3.7059 24 6 2.2542 -1.0931 -0.0005 25 8 1.8804 -2.2525 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9251 2.1373 0.0004 30 1 4.5150 -2.4475 0.5137 31 1 5.5414 -0.9933 0.5130 32 1 5.3641 -0.8693 -1.9572 33 1 4.3377 -2.3236 -1.9564 34 1 6.5366 -2.7796 -3.4500 35 1 8.4936 -4.1394 -0.4463 36 1 12.5766 -7.0044 -1.7739 37 1 8.4735 -4.1321 -4.7350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649819664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:50 Heat of formation + Delta-G solvation = 101.275591 kcal Electronic energy + Delta-G solvation = -23668.784226 eV Core-core repulsion = 19871.975688 eV Total energy + Delta-G solvation = -3796.808538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62666 -39.91462 -38.66344 -37.43020 -35.86160 -34.21224 -33.16698 -32.86175 -30.37331 -29.95148 -28.02166 -27.46228 -25.27236 -24.33267 -22.58985 -21.41058 -20.92478 -20.10269 -19.38844 -17.97466 -17.39493 -17.06576 -16.43582 -16.22658 -15.77593 -15.42649 -15.24948 -15.17065 -14.65420 -14.22399 -13.90983 -13.53585 -13.27517 -13.13936 -12.86256 -12.83615 -12.80498 -12.40803 -12.10997 -11.65827 -11.39681 -11.33118 -11.22191 -10.92824 -10.52091 -10.43448 -10.35036 -10.14371 -9.22830 -9.14572 -8.80146 -8.74938 -8.03251 -6.67800 -6.53370 -4.20368 1.52508 1.69134 2.46591 2.83081 2.84265 3.04640 3.06466 3.11695 3.64911 3.69995 3.90941 4.16928 4.42400 4.44600 4.70628 4.73615 4.80218 4.82521 5.03969 5.06867 5.09311 5.21368 5.45055 5.48850 5.69235 5.79879 6.01694 6.26815 6.29098 6.48317 6.92316 6.98245 7.14064 7.26592 7.38462 7.83952 7.88218 8.18823 8.30936 8.64762 8.86125 9.40525 9.69805 10.42718 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.053185 B = 0.002218 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.342208 B =12618.712229 C =12671.288121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.248 3.752 4 N -0.278 5.278 5 N -0.449 5.449 6 C 0.177 3.823 7 C -0.154 4.154 8 C 0.506 3.494 9 O -0.537 6.537 10 N -0.622 5.622 11 C -0.061 4.061 12 C -0.033 4.033 13 N -0.260 5.260 14 N -0.143 5.143 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.045 3.955 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.084 4.084 24 C 0.641 3.359 25 O -0.551 6.551 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.397 0.603 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.849 15.962 0.335 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.294 5.294 3 C -0.051 4.051 4 N -0.098 5.098 5 N -0.270 5.270 6 C 0.056 3.944 7 C -0.195 4.195 8 C 0.291 3.709 9 O -0.415 6.415 10 N -0.264 5.264 11 C -0.166 4.166 12 C -0.208 4.208 13 N -0.092 5.092 14 N 0.089 4.911 15 C -0.455 4.455 16 H 0.133 0.867 17 C -0.172 4.172 18 N -0.397 5.397 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 C 0.340 3.660 25 O -0.424 6.424 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.246 0.754 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.085 0.915 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.581 14.300 1.654 22.723 hybrid contribution -1.249 0.231 -1.372 1.869 sum -18.830 14.530 0.283 23.786 Atomic orbital electron populations 1.21809 0.74307 1.04687 1.03510 1.45966 1.08879 1.06766 1.67779 1.25929 0.85901 0.94714 0.98558 1.77029 1.18099 0.92273 1.22449 1.49112 1.06337 1.02980 1.68549 1.21239 0.83054 0.93641 0.96463 1.21952 0.97404 1.01195 0.98976 1.19987 0.85156 0.81770 0.83995 1.90617 1.63176 1.56585 1.31144 1.42488 1.26652 1.49445 1.07857 1.17281 0.95180 1.09914 0.94241 1.24122 0.95871 1.01991 0.98833 1.78252 1.20062 1.22736 0.88113 1.44550 1.14849 1.27295 1.04392 1.19861 1.05449 1.30073 0.90154 0.86652 1.25644 0.98380 0.96912 0.96222 1.70218 1.28219 1.31947 1.09278 0.85826 0.79902 0.78845 0.79556 1.19604 1.20098 1.18832 1.21261 0.96607 1.08642 0.96968 1.16838 0.82213 0.85122 0.81812 1.91115 1.77672 1.15164 1.58451 0.90923 0.89366 0.89407 0.75396 0.87610 0.87579 0.88454 0.88783 0.76975 0.80658 0.91473 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.05 59.85 0.66 1.06 16 2 N -0.56 -4.55 3.14 -130.10 -0.41 -4.96 16 3 C 0.25 1.52 12.66 -89.12 -1.13 0.39 16 4 N -0.28 -2.79 12.53 29.87 0.37 -2.42 16 5 N -0.45 -5.53 3.63 -65.12 -0.24 -5.76 16 6 C 0.18 2.31 5.68 -4.04 -0.02 2.28 16 7 C -0.15 -1.94 6.02 -27.88 -0.17 -2.11 16 8 C 0.51 8.75 7.80 -10.98 -0.09 8.67 16 9 O -0.54 -11.31 13.13 5.54 0.07 -11.24 16 10 N -0.62 -11.15 5.47 -10.00 -0.05 -11.21 16 11 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 12 C -0.03 -0.87 10.85 -17.04 -0.18 -1.06 16 13 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 14 N -0.14 -3.99 3.74 -11.41 -0.04 -4.04 16 15 C -0.32 -8.67 10.25 -14.82 -0.15 -8.82 16 16 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.82 11.81 55.49 0.66 -21.17 16 19 Si 0.93 19.16 29.55 -169.99 -5.02 14.14 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 23 C -0.08 -2.01 11.49 -16.39 -0.19 -2.19 16 24 C 0.64 8.26 8.60 -86.73 -0.75 7.51 16 25 O -0.55 -9.11 17.71 5.08 0.09 -9.02 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.23 0.10 8.06 -52.49 -0.42 -0.33 16 30 H 0.11 1.52 8.07 -51.93 -0.42 1.10 16 31 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.49 8.83 -40.82 -0.36 5.13 16 35 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -38.75 333.04 -5.94 -44.68 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.01 Total: 8.52 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.69 Total: 4.83 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.61 Total: -56.94 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.16 Total: -20.26 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -38.75 -5.94 -44.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649819664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.960 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds