Wall clock time and date at job start Fri Apr 10 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37354 * 125.83397 * 2 1 4 4 N 1.29408 * 108.82927 * 179.77436 * 3 2 1 5 5 N 1.40171 * 108.13685 * 0.38258 * 4 3 2 6 6 C 1.46499 * 126.34749 * 179.88043 * 5 4 3 7 7 C 1.53004 * 109.47198 * 269.68647 * 6 5 4 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 5 9 9 O 1.21303 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.40595 * 119.99527 * 179.72943 * 10 8 7 12 12 C 1.40649 * 126.08553 * 359.68015 * 11 10 8 13 13 N 1.30904 * 108.38874 * 179.82002 * 12 11 10 14 14 N 1.40074 * 108.40725 * 0.44423 * 13 12 11 15 15 C 1.37320 * 126.07083 * 179.69504 * 14 13 12 16 16 H 1.08008 * 119.99803 * 180.02562 * 15 14 13 17 17 C 1.38983 * 120.00073 * 0.02677 * 15 14 13 18 18 N 1.31295 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47561 * 89.99678 * 19 17 15 21 21 H 1.48498 * 109.47039 * 209.99964 * 19 17 15 22 22 H 1.48503 * 109.47029 * 329.99587 * 19 17 15 23 23 C 1.35679 * 126.07814 * 179.97438 * 11 10 8 24 24 C 1.34818 * 125.82916 * 180.02562 * 2 1 3 25 25 O 1.21818 * 126.30185 * 359.97253 * 24 2 1 26 26 H 1.09000 * 109.46889 * 269.97989 * 1 2 3 27 27 H 1.09004 * 109.47171 * 29.97794 * 1 2 3 28 28 H 1.09001 * 109.47544 * 149.97687 * 1 2 3 29 29 H 1.07999 * 125.58856 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.47424 * 149.69007 * 6 5 4 31 31 H 1.08998 * 109.47492 * 29.68583 * 6 5 4 32 32 H 1.09009 * 109.46730 * 59.99787 * 7 6 5 33 33 H 1.08998 * 109.46846 * 300.00332 * 7 6 5 34 34 H 0.97001 * 120.00485 * 359.71840 * 10 8 7 35 35 H 1.08000 * 125.80217 * 359.97438 * 12 11 10 36 36 H 0.96996 * 119.99896 * 180.02562 * 18 17 15 37 37 H 1.07996 * 126.24933 * 359.97377 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7351 0.0048 5 7 3.5344 -0.6663 -0.0008 6 6 4.7313 -1.5111 -0.0005 7 6 5.1478 -1.8058 -1.4429 8 6 6.3794 -2.6743 -1.4427 9 8 6.8755 -3.0228 -0.3921 10 7 6.9331 -3.0586 -2.6098 11 6 8.0854 -3.8642 -2.6095 12 6 8.7666 -4.3353 -1.4727 13 7 9.7857 -5.0542 -1.8704 14 7 9.8017 -5.0622 -3.2710 15 6 10.7208 -5.7024 -4.0654 16 1 10.6396 -5.6428 -5.1408 17 6 11.7554 -6.4270 -3.4857 18 7 11.8543 -6.4990 -2.1785 19 14 13.0061 -7.2972 -4.5664 20 1 14.1393 -6.3801 -4.8492 21 1 13.5102 -8.5055 -3.8656 22 1 12.3630 -7.6980 -5.8435 23 6 8.7414 -4.3207 -3.7059 24 6 2.2542 -1.0931 -0.0005 25 8 1.8804 -2.2525 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9251 2.1373 0.0004 30 1 4.5150 -2.4475 0.5137 31 1 5.5414 -0.9933 0.5130 32 1 5.3641 -0.8693 -1.9572 33 1 4.3377 -2.3236 -1.9564 34 1 6.5366 -2.7796 -3.4500 35 1 8.4936 -4.1394 -0.4463 36 1 12.5766 -7.0044 -1.7739 37 1 8.4735 -4.1321 -4.7350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649819664.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:49 Heat of formation + Delta-G solvation = 72.827985 kcal Electronic energy + Delta-G solvation = -23670.017807 eV Core-core repulsion = 19871.975688 eV Total energy + Delta-G solvation = -3798.042119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.38304 -41.71978 -40.32125 -38.40423 -36.70876 -35.92108 -34.97358 -33.78000 -32.25453 -31.08833 -29.56411 -28.27309 -26.90993 -25.60817 -23.38894 -22.85937 -22.25085 -21.60266 -21.19288 -19.40396 -18.63975 -17.98341 -17.58125 -17.36854 -17.12635 -16.94723 -16.60742 -16.35638 -15.79970 -15.49738 -15.28825 -14.96392 -14.68881 -14.38815 -14.26789 -13.87741 -13.49453 -13.46508 -13.31256 -13.18366 -12.91213 -12.86012 -12.84282 -12.36779 -12.08879 -11.84685 -11.36464 -11.07515 -11.01487 -10.84801 -10.69842 -10.10210 -9.64833 -8.53567 -8.46866 -6.24211 0.73504 1.12208 1.20597 1.39672 1.50718 1.56785 1.57926 1.86253 2.03970 2.20400 2.41665 2.51619 2.93003 3.09074 3.48430 3.65716 3.94735 4.01965 4.14923 4.31550 4.37558 4.44295 4.55715 4.60895 4.68920 4.72309 4.84209 4.97782 5.00297 5.08616 5.12478 5.29474 5.46914 5.72568 5.95867 6.31259 6.65914 6.71961 6.73803 6.95851 7.36168 7.46952 7.68260 8.52695 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.053185 B = 0.002218 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.342208 B =12618.712229 C =12671.288121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.457 5.457 6 C 0.180 3.820 7 C -0.130 4.130 8 C 0.506 3.494 9 O -0.576 6.576 10 N -0.615 5.615 11 C -0.046 4.046 12 C -0.060 4.060 13 N -0.311 5.311 14 N -0.169 5.169 15 C -0.354 4.354 16 H 0.141 0.859 17 C -0.009 4.009 18 N -0.826 5.826 19 Si 1.020 2.980 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.244 1.244 23 C -0.081 4.081 24 C 0.624 3.376 25 O -0.601 6.601 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.291 0.709 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.421 0.579 35 H 0.169 0.831 36 H 0.276 0.724 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.675 18.490 -2.014 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.137 5.137 5 N -0.276 5.276 6 C 0.058 3.942 7 C -0.171 4.171 8 C 0.293 3.707 9 O -0.456 6.456 10 N -0.260 5.260 11 C -0.152 4.152 12 C -0.235 4.235 13 N -0.143 5.143 14 N 0.062 4.938 15 C -0.485 4.485 16 H 0.159 0.841 17 C -0.220 4.220 18 N -0.454 5.454 19 Si 0.839 3.161 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.167 1.167 23 C -0.231 4.231 24 C 0.323 3.677 25 O -0.479 6.479 26 H 0.102 0.898 27 H 0.153 0.847 28 H 0.089 0.911 29 H 0.306 0.694 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.258 0.742 35 H 0.185 0.815 36 H 0.086 0.914 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -19.487 16.911 -0.725 25.811 hybrid contribution -0.908 -0.366 -0.571 1.133 sum -20.395 16.545 -1.296 26.294 Atomic orbital electron populations 1.22178 0.71801 1.06158 1.04753 1.46181 1.10202 1.05899 1.66277 1.27182 0.84326 0.96107 0.94087 1.77073 1.20446 0.90336 1.25841 1.48993 1.05730 1.04237 1.68667 1.20986 0.83631 0.93124 0.96467 1.21798 0.94861 1.01274 0.99172 1.20844 0.85743 0.81073 0.83008 1.90610 1.64473 1.57820 1.32703 1.42443 1.25235 1.48806 1.09491 1.17355 0.95975 1.09022 0.92821 1.24191 0.96647 1.03072 0.99632 1.78145 1.21725 1.24448 0.89981 1.44853 1.16358 1.28695 1.03901 1.20621 1.05905 1.30572 0.91377 0.84124 1.26911 1.00351 0.97172 0.97576 1.70405 1.29514 1.33607 1.11837 0.84575 0.76618 0.77091 0.77805 1.18813 1.20284 1.16687 1.22012 0.95168 1.06937 0.98977 1.17166 0.82906 0.85560 0.82098 1.91061 1.78549 1.17465 1.60779 0.89845 0.84744 0.91087 0.69389 0.89967 0.87892 0.85592 0.87572 0.74207 0.81459 0.91420 0.79446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.05 127.77 1.41 1.87 16 2 N -0.56 -7.52 3.14 -683.67 -2.15 -9.67 16 3 C 0.28 2.30 12.66 179.82 2.28 4.58 16 4 N -0.32 -5.59 12.53 -59.42 -0.74 -6.34 16 5 N -0.46 -10.92 3.63 -478.02 -1.73 -12.65 16 6 C 0.18 4.75 5.68 86.38 0.49 5.24 16 7 C -0.13 -3.12 6.02 29.85 0.18 -2.94 16 8 C 0.51 17.38 7.80 87.66 0.68 18.06 16 9 O -0.58 -25.10 13.13 -3.10 -0.04 -25.14 16 10 N -0.61 -21.29 5.47 -303.92 -1.66 -22.95 16 11 C -0.05 -2.13 6.90 37.73 0.26 -1.87 16 12 C -0.06 -3.36 10.85 85.42 0.93 -2.43 16 13 N -0.31 -19.20 10.40 -56.47 -0.59 -19.78 16 14 N -0.17 -9.57 3.74 -190.01 -0.71 -10.28 16 15 C -0.35 -19.03 10.25 84.01 0.86 -18.17 16 16 H 0.14 6.53 7.83 -2.91 -0.02 6.51 16 17 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 18 N -0.83 -48.62 11.81 21.66 0.26 -48.36 16 19 Si 1.02 39.22 29.55 68.60 2.03 41.25 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.24 -8.48 7.11 99.48 0.71 -7.77 16 23 C -0.08 -3.79 11.49 83.37 0.96 -2.83 16 24 C 0.62 15.73 8.60 178.99 1.54 17.27 16 25 O -0.60 -20.45 17.71 -4.73 -0.08 -20.53 16 26 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 29 H 0.29 -1.67 8.06 -2.91 -0.02 -1.69 16 30 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 31 H 0.10 2.73 8.10 -2.39 -0.02 2.71 16 32 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.42 10.50 8.83 -92.71 -0.82 9.69 16 35 H 0.17 9.43 5.92 -2.91 -0.02 9.41 16 36 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -92.09 333.04 4.94 -87.15 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.31 Total: 28.53 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 10.05 Total: 18.77 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.33 Total: -130.04 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.12 Total: -45.67 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -92.09 4.94 -87.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649819664.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.978 kcal (2) G-P(sol) polarization free energy of solvation -92.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds