Wall clock time and date at job start Fri Apr 10 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99699 * 2 1 4 4 C 1.50703 * 109.46503 * 90.00620 * 3 2 1 5 5 N 1.31253 * 126.20153 * 90.02664 * 4 3 2 6 6 N 1.28814 * 110.03967 * 179.97438 * 5 4 3 7 7 C 1.31387 * 109.25736 * 359.97438 * 6 5 4 8 8 C 1.46889 * 134.26558 * 180.02562 * 7 6 5 9 9 O 1.21744 * 120.78517 * 0.02562 * 8 7 6 10 10 N 1.35149 * 118.43196 * 179.97438 * 8 7 6 11 11 H 0.97004 * 119.85957 * 180.02562 * 10 8 7 12 12 C 1.38152 * 120.28959 * 0.02562 * 10 8 7 13 13 C 1.32818 * 121.84291 * 359.97438 * 12 10 8 14 14 N 1.34482 * 126.19809 * 269.97650 * 4 3 2 15 15 C 1.34777 * 120.00128 * 180.02562 * 2 1 3 16 16 O 1.21587 * 119.99743 * 179.97438 * 15 2 1 17 17 N 1.34771 * 120.00027 * 359.97438 * 15 2 1 18 18 C 1.46499 * 120.00298 * 180.02562 * 17 15 2 19 19 C 1.50696 * 109.47608 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00282 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00326 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99889 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47235 * 89.99974 * 23 21 19 25 25 H 1.48506 * 109.47017 * 210.00124 * 23 21 19 26 26 H 1.48500 * 109.46919 * 329.99631 * 23 21 19 27 27 H 1.08999 * 109.47183 * 89.99435 * 1 2 3 28 28 H 1.08997 * 109.46436 * 209.99644 * 1 2 3 29 29 H 1.08997 * 109.47281 * 329.99377 * 1 2 3 30 30 H 1.09000 * 109.47393 * 330.00760 * 3 2 1 31 31 H 1.09001 * 109.47205 * 210.00121 * 3 2 1 32 32 H 1.07996 * 119.08032 * 180.02562 * 12 10 8 33 33 H 1.07996 * 119.45429 * 179.97438 * 13 12 10 34 34 H 0.97003 * 120.00414 * 0.02562 * 17 15 2 35 35 H 1.08998 * 109.47192 * 300.00276 * 18 17 15 36 36 H 1.08997 * 109.46786 * 59.99910 * 18 17 15 37 37 H 0.97001 * 120.00364 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7036 1.4209 5 7 3.4954 1.3982 2.1515 6 7 3.3913 1.9348 3.3180 7 6 2.2671 2.6114 3.3849 8 6 1.6144 3.4147 4.4272 9 8 2.1345 3.5611 5.5182 10 7 0.4233 3.9882 4.1462 11 1 -0.0258 4.5233 4.8192 12 6 -0.1574 3.8158 2.9046 13 6 0.4227 3.0919 1.9540 14 7 1.6414 2.4757 2.1697 15 6 2.1390 -1.1672 -0.0005 16 8 3.3549 -1.1671 -0.0010 17 7 1.4652 -2.3344 -0.0005 18 6 2.1976 -3.6031 -0.0005 19 6 1.2184 -4.7486 -0.0012 20 1 0.1566 -4.5513 -0.0011 21 6 1.6780 -6.0484 -0.0007 22 7 0.8235 -7.0481 -0.0008 23 14 3.5146 -6.3897 -0.0001 24 1 4.0008 -6.4798 1.4001 25 1 3.7799 -7.6724 -0.6998 26 1 4.2229 -5.2882 -0.7002 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6084 2.0285 -0.5137 31 1 3.1499 1.1385 -0.5139 32 1 -1.1094 4.2833 2.7009 33 1 -0.0659 2.9823 0.9972 34 1 0.4951 -2.3345 -0.0005 35 1 2.8243 -3.6608 -0.8905 36 1 2.8242 -3.6608 0.8894 37 1 1.1468 -7.9626 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686299903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:56 Heat of formation + Delta-G solvation = 63.450532 kcal Electronic energy + Delta-G solvation = -24692.480992 eV Core-core repulsion = 20894.032236 eV Total energy + Delta-G solvation = -3798.448756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.92113 -40.52658 -39.67031 -37.87691 -35.77452 -34.68950 -34.38667 -32.51292 -31.63214 -30.56557 -28.46230 -27.60026 -25.83488 -25.27712 -24.36897 -22.29082 -21.41553 -19.74459 -19.40901 -19.13845 -18.37298 -18.03134 -17.24914 -16.44451 -16.16474 -16.09582 -15.97033 -15.09265 -14.77802 -14.52300 -14.37402 -13.85389 -13.72719 -13.27979 -13.17980 -13.08919 -12.67543 -12.47823 -12.15027 -12.10059 -11.91945 -11.63488 -11.13952 -10.96849 -10.80020 -10.73618 -9.95035 -9.86216 -9.52639 -9.45262 -8.88056 -8.76854 -8.73705 -8.07720 -6.20142 -4.22336 0.44007 0.86582 1.84614 1.98824 2.21700 2.85261 3.04618 3.31453 3.38166 3.40507 3.47256 3.57521 3.82870 4.09924 4.23941 4.34792 4.37057 4.59674 4.77963 4.90550 4.93083 5.15946 5.31053 5.34088 5.42573 5.51670 5.55526 5.82379 6.01404 6.33419 6.49769 6.68398 7.12922 7.14486 7.15664 7.30679 7.44486 8.23110 8.25801 8.60138 8.77847 9.11429 9.40864 10.91658 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.003272 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.426674 B = 8556.307624 C = 8784.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.638 5.638 3 C 0.221 3.779 4 C 0.190 3.810 5 N -0.242 5.242 6 N -0.205 5.205 7 C 0.096 3.904 8 C 0.601 3.399 9 O -0.481 6.481 10 N -0.640 5.640 11 H 0.429 0.571 12 C 0.090 3.910 13 C -0.028 4.028 14 N -0.388 5.388 15 C 0.694 3.306 16 O -0.578 6.578 17 N -0.719 5.719 18 C 0.237 3.763 19 C -0.543 4.543 20 H 0.078 0.922 21 C 0.078 3.922 22 N -0.893 5.893 23 Si 0.876 3.124 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.259 1.259 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.392 0.608 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 26.663 0.763 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.378 5.378 3 C 0.094 3.906 4 C -0.076 4.076 5 N -0.086 5.086 6 N -0.051 5.051 7 C -0.166 4.166 8 C 0.386 3.614 9 O -0.350 6.350 10 N -0.284 5.284 11 H 0.269 0.731 12 C -0.032 4.032 13 C -0.147 4.147 14 N -0.076 5.076 15 C 0.395 3.605 16 O -0.454 6.454 17 N -0.372 5.372 18 C 0.114 3.886 19 C -0.581 4.581 20 H 0.096 0.904 21 C -0.125 4.125 22 N -0.531 5.531 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.183 1.183 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.206 0.794 33 H 0.199 0.801 34 H 0.227 0.773 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.644 25.734 1.704 26.632 hybrid contribution -1.276 0.383 -0.027 1.332 sum -7.920 26.116 1.678 27.342 Atomic orbital electron populations 1.21778 0.79807 1.02862 1.02043 1.47077 1.06094 1.04349 1.80295 1.19566 1.00921 0.85325 0.84830 1.25844 0.88466 0.94396 0.98929 1.75042 1.18685 1.17444 0.97384 1.74746 1.12146 1.05979 1.12230 1.24570 0.96079 1.08193 0.87773 1.16493 0.80376 0.78854 0.85668 1.91001 1.62992 1.58797 1.22200 1.43393 1.20285 1.49479 1.15227 0.73091 1.21387 0.99254 0.98856 0.83697 1.20995 0.87597 1.03294 1.02790 1.43715 1.16370 1.35240 1.12262 1.16072 0.85591 0.80386 0.78420 1.90936 1.11278 1.85801 1.57405 1.45539 1.09862 1.04898 1.76904 1.19402 0.92911 0.79389 0.96851 1.21057 0.94266 0.89370 1.53383 0.90419 1.24766 0.98227 0.95750 0.93786 1.69876 1.34471 0.99211 1.49515 0.86818 0.85405 0.78324 0.79200 1.19790 1.20929 1.18311 0.91923 0.90731 0.91977 0.88240 0.85476 0.79384 0.80062 0.77343 0.95688 0.96233 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.20 59.85 0.61 1.30 16 2 N -0.64 -8.49 2.86 -188.74 -0.54 -9.03 16 3 C 0.22 2.43 5.93 -5.19 -0.03 2.40 16 4 C 0.19 2.56 7.70 -155.29 -1.20 1.36 16 5 N -0.24 -4.40 12.23 32.73 0.40 -4.00 16 6 N -0.20 -3.69 12.29 32.34 0.40 -3.30 16 7 C 0.10 1.34 8.12 -154.30 -1.25 0.09 16 8 C 0.60 6.87 7.97 -12.59 -0.10 6.77 16 9 O -0.48 -7.15 17.99 5.15 0.09 -7.05 16 10 N -0.64 -3.38 5.38 -13.15 -0.07 -3.45 16 11 H 0.43 0.97 8.92 -40.82 -0.36 0.61 16 12 C 0.09 0.22 11.09 -16.56 -0.18 0.03 16 13 C -0.03 -0.13 10.44 -16.52 -0.17 -0.30 16 14 N -0.39 -4.12 2.97 -58.39 -0.17 -4.30 16 15 C 0.69 13.49 8.28 -86.92 -0.72 12.77 16 16 O -0.58 -13.58 15.92 5.29 0.08 -13.50 16 17 N -0.72 -14.74 5.41 -66.42 -0.36 -15.10 16 18 C 0.24 5.94 4.50 -5.20 -0.02 5.91 16 19 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 20 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 21 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 22 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 23 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 29 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 30 H 0.10 0.56 8.07 -51.93 -0.42 0.15 16 31 H 0.13 1.61 7.42 -51.93 -0.39 1.22 16 32 H 0.19 -0.52 8.06 -52.49 -0.42 -0.95 16 33 H 0.18 0.15 7.32 -52.49 -0.38 -0.23 16 34 H 0.39 6.98 6.05 -40.82 -0.25 6.73 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -41.57 324.89 -6.35 -47.92 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -3.68 Total: -1.62 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: -3.50 Total: 17.18 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: 0.43 Total: -64.98 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -41.57 -6.35 -47.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686299903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.370 kcal (2) G-P(sol) polarization free energy of solvation -41.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds