Wall clock time and date at job start Fri Apr 10 2020 17:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99699 * 2 1 4 4 C 1.50703 * 109.46503 * 90.00620 * 3 2 1 5 5 N 1.31253 * 126.20153 * 90.02664 * 4 3 2 6 6 N 1.28814 * 110.03967 * 179.97438 * 5 4 3 7 7 C 1.31387 * 109.25736 * 359.97438 * 6 5 4 8 8 C 1.46889 * 134.26558 * 180.02562 * 7 6 5 9 9 O 1.21744 * 120.78517 * 0.02562 * 8 7 6 10 10 N 1.35149 * 118.43196 * 179.97438 * 8 7 6 11 11 H 0.97004 * 119.85957 * 180.02562 * 10 8 7 12 12 C 1.38152 * 120.28959 * 0.02562 * 10 8 7 13 13 C 1.32818 * 121.84291 * 359.97438 * 12 10 8 14 14 N 1.34482 * 126.19809 * 269.97650 * 4 3 2 15 15 C 1.34777 * 120.00128 * 180.02562 * 2 1 3 16 16 O 1.21587 * 119.99743 * 179.97438 * 15 2 1 17 17 N 1.34771 * 120.00027 * 359.97438 * 15 2 1 18 18 C 1.46499 * 120.00298 * 180.02562 * 17 15 2 19 19 C 1.50696 * 109.47608 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00087 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00282 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00326 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99889 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47235 * 89.99974 * 23 21 19 25 25 H 1.48506 * 109.47017 * 210.00124 * 23 21 19 26 26 H 1.48500 * 109.46919 * 329.99631 * 23 21 19 27 27 H 1.08999 * 109.47183 * 89.99435 * 1 2 3 28 28 H 1.08997 * 109.46436 * 209.99644 * 1 2 3 29 29 H 1.08997 * 109.47281 * 329.99377 * 1 2 3 30 30 H 1.09000 * 109.47393 * 330.00760 * 3 2 1 31 31 H 1.09001 * 109.47205 * 210.00121 * 3 2 1 32 32 H 1.07996 * 119.08032 * 180.02562 * 12 10 8 33 33 H 1.07996 * 119.45429 * 179.97438 * 13 12 10 34 34 H 0.97003 * 120.00414 * 0.02562 * 17 15 2 35 35 H 1.08998 * 109.47192 * 300.00276 * 18 17 15 36 36 H 1.08997 * 109.46786 * 59.99910 * 18 17 15 37 37 H 0.97001 * 120.00364 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7036 1.4209 5 7 3.4954 1.3982 2.1515 6 7 3.3913 1.9348 3.3180 7 6 2.2671 2.6114 3.3849 8 6 1.6144 3.4147 4.4272 9 8 2.1345 3.5611 5.5182 10 7 0.4233 3.9882 4.1462 11 1 -0.0258 4.5233 4.8192 12 6 -0.1574 3.8158 2.9046 13 6 0.4227 3.0919 1.9540 14 7 1.6414 2.4757 2.1697 15 6 2.1390 -1.1672 -0.0005 16 8 3.3549 -1.1671 -0.0010 17 7 1.4652 -2.3344 -0.0005 18 6 2.1976 -3.6031 -0.0005 19 6 1.2184 -4.7486 -0.0012 20 1 0.1566 -4.5513 -0.0011 21 6 1.6780 -6.0484 -0.0007 22 7 0.8235 -7.0481 -0.0008 23 14 3.5146 -6.3897 -0.0001 24 1 4.0008 -6.4798 1.4001 25 1 3.7799 -7.6724 -0.6998 26 1 4.2229 -5.2882 -0.7002 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6084 2.0285 -0.5137 31 1 3.1499 1.1385 -0.5139 32 1 -1.1094 4.2833 2.7009 33 1 -0.0659 2.9823 0.9972 34 1 0.4951 -2.3345 -0.0005 35 1 2.8243 -3.6608 -0.8905 36 1 2.8242 -3.6608 0.8894 37 1 1.1468 -7.9626 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686299903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:55 Heat of formation + Delta-G solvation = 28.473453 kcal Electronic energy + Delta-G solvation = -24693.997712 eV Core-core repulsion = 20894.032236 eV Total energy + Delta-G solvation = -3799.965476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.83286 -41.34136 -41.04460 -38.63731 -37.01149 -36.17822 -35.50993 -34.46900 -32.76972 -31.14108 -30.07994 -28.69503 -26.97882 -26.19477 -25.07365 -24.07015 -22.49627 -21.16135 -20.22536 -19.95497 -19.53004 -18.89199 -18.38833 -18.13321 -17.43022 -17.06310 -16.88606 -16.44014 -16.01842 -15.72855 -15.22616 -15.06423 -14.89073 -14.66572 -14.40902 -14.04815 -13.85319 -13.72429 -13.43112 -13.16505 -12.99766 -12.91068 -12.72491 -12.46235 -12.03000 -11.93174 -11.79085 -11.64827 -11.28928 -10.92438 -10.79213 -10.16101 -9.65483 -9.28098 -8.40940 -6.46923 -0.32884 0.18974 1.06295 1.28024 1.32427 1.34792 1.35589 1.47964 1.90760 2.05623 2.16513 2.27980 2.79746 2.95075 3.06057 3.17250 3.40923 3.64849 4.02258 4.19725 4.20890 4.44990 4.45193 4.61869 4.68756 4.76489 4.86881 4.93136 5.04477 5.23970 5.29911 5.43884 5.46626 5.53779 5.80368 5.85849 6.16627 6.49204 6.53815 7.06909 7.19029 7.25383 7.63001 8.73499 Molecular weight = 306.12amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.003272 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.426674 B = 8556.307624 C = 8784.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.626 5.626 3 C 0.222 3.778 4 C 0.185 3.815 5 N -0.306 5.306 6 N -0.272 5.272 7 C 0.082 3.918 8 C 0.595 3.405 9 O -0.531 6.531 10 N -0.613 5.613 11 H 0.448 0.552 12 C 0.121 3.879 13 C -0.065 4.065 14 N -0.366 5.366 15 C 0.689 3.311 16 O -0.627 6.627 17 N -0.719 5.719 18 C 0.251 3.749 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.031 3.969 22 N -0.928 5.928 23 Si 0.931 3.069 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.261 1.261 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.169 0.831 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.233 0.767 34 H 0.405 0.595 35 H 0.013 0.987 36 H -0.001 1.001 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 29.635 -0.481 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.364 5.364 3 C 0.096 3.904 4 C -0.083 4.083 5 N -0.149 5.149 6 N -0.118 5.118 7 C -0.182 4.182 8 C 0.380 3.620 9 O -0.404 6.404 10 N -0.257 5.257 11 H 0.291 0.709 12 C 0.001 3.999 13 C -0.181 4.181 14 N -0.051 5.051 15 C 0.390 3.610 16 O -0.507 6.507 17 N -0.375 5.375 18 C 0.127 3.873 19 C -0.581 4.581 20 H 0.081 0.919 21 C -0.170 4.170 22 N -0.567 5.567 23 Si 0.756 3.244 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.185 1.185 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.187 0.813 31 H 0.122 0.878 32 H 0.275 0.725 33 H 0.250 0.750 34 H 0.242 0.758 35 H 0.031 0.969 36 H 0.017 0.983 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.234 28.788 0.434 30.556 hybrid contribution -0.438 -0.348 0.372 0.672 sum -10.671 28.439 0.806 30.386 Atomic orbital electron populations 1.22169 0.76384 1.04401 1.04307 1.47024 1.08074 1.02938 1.78347 1.19965 1.01198 0.85529 0.83714 1.26007 0.88138 0.94733 0.99415 1.74861 1.22014 1.19672 0.98377 1.74558 1.15291 1.08809 1.13182 1.24958 0.95772 1.07823 0.89663 1.16541 0.81883 0.79029 0.84526 1.90970 1.64808 1.60845 1.23796 1.43369 1.17865 1.47425 1.17053 0.70863 1.22610 1.00180 0.96201 0.80958 1.22176 0.85775 1.04125 1.06012 1.43861 1.17351 1.33749 1.10187 1.16298 0.85130 0.81610 0.77922 1.90904 1.13690 1.86831 1.59287 1.45218 1.10356 1.04177 1.77725 1.18925 0.92242 0.80910 0.95232 1.21234 0.94041 0.90254 1.52526 0.91916 1.25492 1.02034 0.95793 0.93634 1.69957 1.36256 0.99777 1.50722 0.85948 0.80746 0.78526 0.79227 1.19682 1.19401 1.18516 0.89240 0.92378 0.87313 0.81335 0.87837 0.72454 0.75025 0.75774 0.96903 0.98319 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.20 127.77 1.30 2.19 16 2 N -0.63 -15.22 2.86 -869.30 -2.48 -17.71 16 3 C 0.22 4.34 5.93 85.63 0.51 4.85 16 4 C 0.19 4.83 7.70 138.09 1.06 5.89 16 5 N -0.31 -11.77 12.23 -50.37 -0.62 -12.38 16 6 N -0.27 -10.53 12.29 -51.59 -0.63 -11.16 16 7 C 0.08 2.30 8.12 135.97 1.10 3.41 16 8 C 0.59 13.11 7.97 86.45 0.69 13.80 16 9 O -0.53 -16.29 17.99 -4.49 -0.08 -16.37 16 10 N -0.61 -3.94 5.38 -313.50 -1.69 -5.63 16 11 H 0.45 0.02 8.92 -92.71 -0.83 -0.81 16 12 C 0.12 -0.25 11.09 82.52 0.92 0.66 16 13 C -0.07 -0.21 10.44 82.50 0.86 0.65 16 14 N -0.37 -6.86 2.97 -338.66 -1.01 -7.86 16 15 C 0.69 26.83 8.28 179.06 1.48 28.32 16 16 O -0.63 -30.54 15.92 -3.99 -0.06 -30.61 16 17 N -0.72 -29.66 5.41 -482.32 -2.61 -32.27 16 18 C 0.25 12.86 4.50 85.63 0.38 13.25 16 19 C -0.54 -30.33 9.83 25.60 0.25 -30.08 16 20 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 21 C 0.03 1.79 5.47 84.65 0.46 2.25 16 22 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 23 Si 0.93 45.59 27.47 68.60 1.88 47.47 16 24 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.26 -12.77 6.54 99.48 0.65 -12.12 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.99 6.36 -2.39 -0.02 0.97 16 29 H 0.11 0.41 6.86 -2.39 -0.02 0.39 16 30 H 0.17 0.90 8.07 -2.39 -0.02 0.88 16 31 H 0.10 2.59 7.42 -2.39 -0.02 2.57 16 32 H 0.26 -4.04 8.06 -2.91 -0.02 -4.06 16 33 H 0.23 -1.71 7.32 -2.91 -0.02 -1.74 16 34 H 0.40 14.21 6.05 -92.71 -0.56 13.65 16 35 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 36 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 37 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -103.48 324.89 1.74 -101.74 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: -0.29 Total: -5.04 kcal Atomic # 6 Polarization: 36.16 SS G_CDS: 9.03 Total: 45.19 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -8.74 Total: -142.39 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.14 Total: -46.97 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -103.48 1.74 -101.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686299903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.215 kcal (2) G-P(sol) polarization free energy of solvation -103.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds