Wall clock time and date at job start Fri Apr 10 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48498 * 109.47324 * 269.99759 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99858 * 3 2 1 6 6 H 1.48503 * 109.47084 * 149.99726 * 3 2 1 7 7 C 1.38803 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99987 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00255 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47103 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46939 * 305.00302 * 11 10 9 13 13 O 1.42907 * 109.46997 * 64.99907 * 11 10 9 14 14 C 1.52996 * 109.47301 * 184.99639 * 11 10 9 15 15 N 1.46498 * 109.47059 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 11 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09004 * 110.82554 * 59.29749 * 18 16 15 20 20 C 1.54706 * 110.93672 * 295.59612 * 18 16 15 21 21 O 1.43873 * 102.73798 * 267.11392 * 20 18 16 22 22 C 1.36141 * 109.24218 * 332.25315 * 21 20 18 23 23 C 1.39290 * 129.88303 * 198.40038 * 22 21 20 24 24 C 1.37931 * 120.23974 * 181.01417 * 23 22 21 25 25 C 1.38288 * 120.35023 * 0.02562 * 24 23 22 26 26 C 1.38349 * 119.76806 * 359.79565 * 25 24 23 27 27 C 1.37739 * 119.97754 * 0.04889 * 26 25 24 28 28 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99333 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47604 * 59.99578 * 10 9 7 31 31 H 1.09003 * 109.46647 * 299.99234 * 10 9 7 32 32 H 0.96694 * 114.00447 * 59.99736 * 13 11 10 33 33 H 1.09004 * 109.47066 * 60.00027 * 14 11 10 34 34 H 1.08994 * 109.46974 * 300.00175 * 14 11 10 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 36 36 H 1.08994 * 110.75292 * 25.44622 * 20 18 16 37 37 H 1.08997 * 110.74937 * 148.80700 * 20 18 16 38 38 H 1.08004 * 119.87870 * 0.99916 * 23 22 21 39 39 H 1.07997 * 119.82359 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.11360 * 179.84037 * 25 24 23 41 41 H 1.08000 * 120.01133 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.3795 -4.7122 0.8435 13 8 0.3221 -4.8125 -1.2193 14 6 1.8247 -6.1410 0.1289 15 7 0.8727 -7.2545 0.1299 16 6 1.3189 -8.5225 0.2270 17 8 2.5082 -8.7415 0.3188 18 6 0.3400 -9.6684 0.2218 19 1 -0.2469 -9.6724 -0.6968 20 6 -0.5793 -9.6158 1.4650 21 8 0.1158 -10.4499 2.4090 22 6 0.8504 -11.3760 1.7336 23 6 1.3980 -12.5777 2.1767 24 6 2.1351 -13.3643 1.3162 25 6 2.3377 -12.9675 0.0070 26 6 1.7940 -11.7771 -0.4419 27 6 1.0549 -10.9917 0.4148 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.6842 -3.7141 0.8920 31 1 2.6854 -3.7148 -0.8879 32 1 0.8683 -4.9044 -2.0119 33 1 2.3906 -6.1465 1.0605 34 1 2.5091 -6.2484 -0.7126 35 1 -0.0786 -7.0794 0.0562 36 1 -0.6644 -8.5958 1.8395 37 1 -1.5622 -10.0276 1.2361 38 1 1.2450 -12.8945 3.1978 39 1 2.5570 -14.2945 1.6670 40 1 2.9176 -13.5851 -0.6627 41 1 1.9494 -11.4637 -1.4637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753948434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:04 Heat of formation + Delta-G solvation = -75.467529 kcal Electronic energy + Delta-G solvation = -24207.430763 eV Core-core repulsion = 20474.205660 eV Total energy + Delta-G solvation = -3733.225103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75347 -39.44277 -37.69701 -37.60463 -34.47842 -34.05442 -33.15455 -31.35793 -30.38267 -29.91198 -28.81953 -25.67547 -24.30429 -23.02035 -22.53812 -22.01516 -21.49218 -20.33476 -18.18589 -17.24414 -17.17402 -17.13230 -16.38602 -16.29241 -15.95182 -15.72096 -15.05838 -14.67245 -14.47688 -14.29395 -13.84627 -13.76283 -13.58025 -13.30290 -13.02329 -12.91201 -12.76848 -12.41025 -12.06260 -12.02323 -11.82953 -11.50488 -11.10351 -10.99435 -10.84101 -10.68364 -10.21947 -10.13607 -9.84825 -9.57428 -9.21251 -9.17098 -8.93572 -8.44468 -6.97549 -5.79296 -3.09196 0.98098 1.12785 2.36908 2.90161 2.95376 3.41838 3.46839 3.48679 3.51402 3.85208 4.14652 4.45695 4.50533 4.54002 4.66664 4.77946 4.78655 4.84899 4.98917 5.01982 5.10736 5.17826 5.24032 5.33272 5.52496 5.56874 5.69182 5.75909 5.89359 6.02226 6.11918 6.14228 6.20889 6.28374 6.29678 6.47055 6.62157 6.86908 7.32790 7.65672 7.86107 8.04416 8.38781 9.50508 10.06388 10.42044 11.43024 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.002257 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.014123 B =12404.677568 C =12579.503917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.090 3.910 15 N -0.720 5.720 16 C 0.520 3.480 17 O -0.526 6.526 18 C -0.103 4.103 19 H 0.125 0.875 20 C 0.062 3.938 21 O -0.300 6.300 22 C 0.112 3.888 23 C -0.141 4.141 24 C -0.082 4.082 25 C -0.150 4.150 26 C -0.052 4.052 27 C -0.149 4.149 28 H 0.256 0.744 29 H 0.388 0.612 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.373 0.627 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -27.580 0.036 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.034 4.034 15 N -0.372 5.372 16 C 0.305 3.695 17 O -0.401 6.401 18 C -0.124 4.124 19 H 0.143 0.857 20 C -0.013 4.013 21 O -0.214 6.214 22 C 0.067 3.933 23 C -0.160 4.160 24 C -0.100 4.100 25 C -0.168 4.168 26 C -0.070 4.070 27 C -0.151 4.151 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.220 0.780 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.704 -27.470 0.771 27.490 hybrid contribution 0.226 1.177 -0.589 1.335 sum -0.478 -26.294 0.181 26.299 Atomic orbital electron populations 1.69676 1.05113 1.25720 1.57317 1.24766 0.95552 0.97765 1.02788 0.86171 0.78643 0.83698 0.77543 1.21663 1.21706 1.20731 1.19214 0.91010 0.84079 1.43223 0.91198 1.42235 1.06056 0.99395 1.89387 1.21196 0.93497 0.86564 0.98904 1.22405 0.94616 0.91787 0.88251 0.87664 1.86572 1.37545 1.96239 1.15423 1.22126 0.92206 0.85811 1.03305 1.45888 1.11268 1.05361 1.74672 1.20105 0.89264 0.83431 0.76708 1.90736 1.16664 1.84484 1.48252 1.21580 0.96645 0.92021 1.02161 0.85741 1.23873 0.94867 0.96527 0.86050 1.86882 1.59524 1.42578 1.32390 1.19565 0.93249 0.90165 0.90360 1.20242 1.02431 0.92104 1.01184 1.20886 0.96741 0.99085 0.93293 1.21024 1.02205 0.97315 0.96303 1.20287 0.94275 0.93201 0.99203 1.20141 1.04282 0.95325 0.95308 0.93450 0.77729 0.95349 0.95895 0.77962 0.90340 0.90981 0.75989 0.87008 0.88980 0.85387 0.85111 0.85387 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.18 5.55 -59.91 -0.33 -18.51 16 10 C 0.13 2.42 5.90 -4.04 -0.02 2.40 16 11 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 O -0.55 -8.22 13.03 -35.23 -0.46 -8.68 16 14 C 0.09 1.14 5.34 -4.04 -0.02 1.12 16 15 N -0.72 -7.82 5.27 -60.30 -0.32 -8.14 16 16 C 0.52 6.42 7.12 -10.98 -0.08 6.34 16 17 O -0.53 -8.74 16.14 5.55 0.09 -8.65 16 18 C -0.10 -0.96 3.52 -91.56 -0.32 -1.28 16 19 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 20 C 0.06 0.51 7.54 38.06 0.29 0.80 16 21 O -0.30 -3.49 11.11 -20.19 -0.22 -3.72 16 22 C 0.11 1.29 7.04 -38.95 -0.27 1.02 16 23 C -0.14 -1.39 10.06 -39.30 -0.40 -1.78 16 24 C -0.08 -0.68 10.02 -39.68 -0.40 -1.08 16 25 C -0.15 -1.29 10.07 -39.52 -0.40 -1.69 16 26 C -0.05 -0.51 10.03 -39.72 -0.40 -0.91 16 27 C -0.15 -1.65 4.93 -104.10 -0.51 -2.16 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.39 10.38 7.67 -40.82 -0.31 10.06 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.37 4.59 9.05 45.56 0.41 5.01 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.41 3.57 8.35 -40.82 -0.34 3.23 16 36 H 0.11 0.80 7.77 -51.93 -0.40 0.39 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -35.69 353.35 -7.92 -43.61 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.84 Total: 12.31 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.86 Total: -3.43 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.07 Total: -54.11 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.59 Total: -21.05 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.69 -7.92 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753948434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.858 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds