Wall clock time and date at job start Fri Apr 10 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48498 * 109.47324 * 269.99759 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99858 * 3 2 1 6 6 H 1.48503 * 109.47084 * 149.99726 * 3 2 1 7 7 C 1.38803 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99987 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00255 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47103 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46939 * 305.00302 * 11 10 9 13 13 O 1.42907 * 109.46997 * 64.99907 * 11 10 9 14 14 C 1.52996 * 109.47301 * 184.99639 * 11 10 9 15 15 N 1.46498 * 109.47059 * 179.97438 * 14 11 10 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 11 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09004 * 110.82554 * 59.29749 * 18 16 15 20 20 C 1.54706 * 110.93672 * 295.59612 * 18 16 15 21 21 O 1.43873 * 102.73798 * 267.11392 * 20 18 16 22 22 C 1.36141 * 109.24218 * 332.25315 * 21 20 18 23 23 C 1.39290 * 129.88303 * 198.40038 * 22 21 20 24 24 C 1.37931 * 120.23974 * 181.01417 * 23 22 21 25 25 C 1.38288 * 120.35023 * 0.02562 * 24 23 22 26 26 C 1.38349 * 119.76806 * 359.79565 * 25 24 23 27 27 C 1.37739 * 119.97754 * 0.04889 * 26 25 24 28 28 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99333 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47604 * 59.99578 * 10 9 7 31 31 H 1.09003 * 109.46647 * 299.99234 * 10 9 7 32 32 H 0.96694 * 114.00447 * 59.99736 * 13 11 10 33 33 H 1.09004 * 109.47066 * 60.00027 * 14 11 10 34 34 H 1.08994 * 109.46974 * 300.00175 * 14 11 10 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 11 36 36 H 1.08994 * 110.75292 * 25.44622 * 20 18 16 37 37 H 1.08997 * 110.74937 * 148.80700 * 20 18 16 38 38 H 1.08004 * 119.87870 * 0.99916 * 23 22 21 39 39 H 1.07997 * 119.82359 * 179.97438 * 24 23 22 40 40 H 1.07994 * 120.11360 * 179.84037 * 25 24 23 41 41 H 1.08000 * 120.01133 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.3795 -4.7122 0.8435 13 8 0.3221 -4.8125 -1.2193 14 6 1.8247 -6.1410 0.1289 15 7 0.8727 -7.2545 0.1299 16 6 1.3189 -8.5225 0.2270 17 8 2.5082 -8.7415 0.3188 18 6 0.3400 -9.6684 0.2218 19 1 -0.2469 -9.6724 -0.6968 20 6 -0.5793 -9.6158 1.4650 21 8 0.1158 -10.4499 2.4090 22 6 0.8504 -11.3760 1.7336 23 6 1.3980 -12.5777 2.1767 24 6 2.1351 -13.3643 1.3162 25 6 2.3377 -12.9675 0.0070 26 6 1.7940 -11.7771 -0.4419 27 6 1.0549 -10.9917 0.4148 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.6842 -3.7141 0.8920 31 1 2.6854 -3.7148 -0.8879 32 1 0.8683 -4.9044 -2.0119 33 1 2.3906 -6.1465 1.0605 34 1 2.5091 -6.2484 -0.7126 35 1 -0.0786 -7.0794 0.0562 36 1 -0.6644 -8.5958 1.8395 37 1 -1.5622 -10.0276 1.2361 38 1 1.2450 -12.8945 3.1978 39 1 2.5570 -14.2945 1.6670 40 1 2.9176 -13.5851 -0.6627 41 1 1.9494 -11.4637 -1.4637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753948434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:04 Heat of formation + Delta-G solvation = -103.956050 kcal Electronic energy + Delta-G solvation = -24208.666118 eV Core-core repulsion = 20474.205660 eV Total energy + Delta-G solvation = -3734.460458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50077 -40.43480 -38.89951 -38.34436 -36.11071 -35.35572 -33.92059 -33.19823 -31.16058 -30.85497 -29.96032 -27.18984 -25.29629 -24.36117 -23.44248 -22.89967 -22.75879 -21.29230 -19.31850 -18.92983 -18.01163 -17.95927 -17.41853 -17.20270 -17.10886 -16.49274 -16.39024 -16.09067 -15.67952 -15.44200 -15.05271 -14.89386 -14.56360 -14.41341 -14.21782 -14.01914 -13.83709 -13.53355 -13.31117 -12.97790 -12.76550 -12.73270 -12.62677 -12.21011 -12.16883 -11.98617 -11.82699 -11.77811 -11.21106 -11.00005 -10.87586 -10.21591 -9.88340 -9.16320 -9.02769 -7.96363 -5.25929 0.28166 0.41636 1.44551 1.47158 1.48714 1.57212 1.99136 2.27365 2.54848 2.79140 3.14148 3.34654 3.45745 3.49542 3.56337 3.75739 3.86275 3.99574 4.17007 4.19622 4.22071 4.35015 4.40042 4.44723 4.50807 4.58704 4.60100 4.67841 4.70093 4.91938 5.04874 5.18880 5.28133 5.35049 5.43391 5.46976 5.54314 5.64551 6.17410 6.24984 6.43949 6.77987 7.12026 7.32182 8.06935 8.30221 9.26728 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.002257 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.014123 B =12404.677568 C =12579.503917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.110 3.890 12 H 0.102 0.898 13 O -0.561 6.561 14 C 0.102 3.898 15 N -0.707 5.707 16 C 0.520 3.480 17 O -0.573 6.573 18 C -0.096 4.096 19 H 0.156 0.844 20 C 0.060 3.940 21 O -0.324 6.324 22 C 0.085 3.915 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.153 4.153 26 C -0.068 4.068 27 C -0.169 4.169 28 H 0.252 0.748 29 H 0.377 0.623 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.385 0.615 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.417 0.583 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -28.794 -0.440 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.120 0.880 13 O -0.367 6.367 14 C -0.023 4.023 15 N -0.360 5.360 16 C 0.307 3.693 17 O -0.452 6.452 18 C -0.117 4.117 19 H 0.173 0.827 20 C -0.015 4.015 21 O -0.239 6.239 22 C 0.040 3.960 23 C -0.174 4.174 24 C -0.099 4.099 25 C -0.171 4.171 26 C -0.086 4.086 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.255 0.745 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.415 -28.711 0.281 28.716 hybrid contribution 0.187 1.455 -0.454 1.536 sum -0.228 -27.256 -0.173 27.258 Atomic orbital electron populations 1.69828 1.06599 1.26135 1.59173 1.25597 0.96436 1.01191 1.03551 0.85127 0.77670 0.79387 0.77472 1.21315 1.22128 1.19481 1.19628 0.91492 0.85358 1.41599 0.90666 1.42413 1.05754 1.00731 1.89379 1.21410 0.94292 0.85831 0.99047 1.22064 0.93477 0.91080 0.88341 0.87981 1.86553 1.38043 1.96190 1.15932 1.21839 0.92100 0.85291 1.03024 1.45746 1.11643 1.04650 1.73925 1.20653 0.89151 0.84144 0.75396 1.90712 1.18824 1.85168 1.50522 1.21627 0.96092 0.89894 1.04125 0.82663 1.24143 0.95563 0.96848 0.84957 1.86830 1.60080 1.43147 1.33830 1.19906 0.94249 0.90961 0.90897 1.20596 1.02602 0.92079 1.02143 1.21277 0.95832 0.99804 0.93014 1.21407 1.01715 0.97064 0.96898 1.20588 0.94475 0.93846 0.99727 1.20414 1.05022 0.96145 0.95449 0.93946 0.79056 0.95088 0.95123 0.76564 0.91069 0.90845 0.74509 0.86277 0.85992 0.84378 0.82188 0.82933 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.93 5.55 -343.47 -1.91 -38.84 16 10 C 0.12 4.53 5.90 86.38 0.51 5.04 16 11 C 0.11 3.12 3.09 30.59 0.09 3.22 16 12 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 13 O -0.56 -15.86 13.03 -148.98 -1.94 -17.80 16 14 C 0.10 2.48 5.34 86.38 0.46 2.94 16 15 N -0.71 -14.35 5.27 -463.07 -2.44 -16.79 16 16 C 0.52 12.34 7.12 87.66 0.62 12.96 16 17 O -0.57 -19.00 16.14 -3.04 -0.05 -19.05 16 18 C -0.10 -1.66 3.52 -11.40 -0.04 -1.70 16 19 H 0.16 1.61 8.14 -2.38 -0.02 1.59 16 20 C 0.06 0.88 7.54 72.56 0.55 1.43 16 21 O -0.32 -7.43 11.11 -95.15 -1.06 -8.49 16 22 C 0.08 1.93 7.04 22.68 0.16 2.09 16 23 C -0.16 -2.96 10.06 22.45 0.23 -2.74 16 24 C -0.08 -1.22 10.02 22.21 0.22 -1.00 16 25 C -0.15 -2.38 10.07 22.31 0.22 -2.15 16 26 C -0.07 -1.30 10.03 22.18 0.22 -1.08 16 27 C -0.17 -3.60 4.93 -19.53 -0.10 -3.70 16 28 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.39 8.84 9.05 -74.06 -0.67 8.17 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 6.51 8.35 -92.71 -0.77 5.74 16 36 H 0.12 1.51 7.77 -2.39 -0.02 1.49 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -77.23 353.35 -1.70 -78.93 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -1.08 Total: 34.45 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 4.46 Total: -1.54 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -4.06 Total: -114.52 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -3.05 Total: -45.34 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -77.23 -1.70 -78.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753948434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.028 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds