Wall clock time and date at job start Fri Apr 10 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00112 * 2 1 4 4 C 1.52997 * 109.47051 * 184.90274 * 3 2 1 5 5 N 1.46508 * 109.47063 * 65.13037 * 4 3 2 6 6 C 1.46497 * 119.99817 * 273.88650 * 5 4 3 7 7 C 1.50702 * 109.47171 * 287.53190 * 6 5 4 8 8 H 1.07997 * 120.00153 * 2.10628 * 7 6 5 9 9 C 1.37878 * 119.99818 * 182.10794 * 7 6 5 10 10 N 1.31507 * 119.99839 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00256 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47322 * 89.99434 * 11 9 7 13 13 H 1.48498 * 109.47430 * 209.99842 * 11 9 7 14 14 H 1.48501 * 109.46895 * 329.99858 * 11 9 7 15 15 S 1.65593 * 119.99978 * 93.88806 * 5 4 3 16 16 O 1.42104 * 106.40392 * 330.40375 * 15 5 4 17 17 O 1.42102 * 106.40127 * 197.48838 * 15 5 4 18 18 N 1.65596 * 107.22246 * 83.94526 * 15 5 4 19 19 C 1.46498 * 119.99696 * 64.20669 * 18 15 5 20 20 H 1.09003 * 109.47348 * 334.45552 * 19 18 15 21 21 C 1.53003 * 109.47184 * 94.45664 * 19 18 15 22 22 C 1.53007 * 109.47267 * 214.45938 * 19 18 15 23 23 C 1.53001 * 117.49817 * 182.92426 * 22 19 18 24 24 C 1.52994 * 117.50080 * 114.29820 * 22 19 18 25 25 H 1.09002 * 109.47463 * 64.92170 * 1 2 3 26 26 H 1.08995 * 109.47385 * 184.91942 * 1 2 3 27 27 H 1.09000 * 109.47689 * 304.92439 * 1 2 3 28 28 H 1.09002 * 109.46854 * 64.90428 * 3 2 1 29 29 H 1.08991 * 109.47433 * 304.90934 * 3 2 1 30 30 H 1.09002 * 109.47787 * 305.12789 * 4 3 2 31 31 H 1.09004 * 109.47333 * 185.12862 * 4 3 2 32 32 H 1.09003 * 109.47250 * 47.52843 * 6 5 4 33 33 H 1.08997 * 109.46987 * 167.53005 * 6 5 4 34 34 H 0.96999 * 120.00266 * 180.02562 * 10 9 7 35 35 H 0.96993 * 120.00570 * 244.20770 * 18 15 5 36 36 H 1.09003 * 109.46590 * 179.97438 * 21 19 18 37 37 H 1.08998 * 109.47145 * 299.99997 * 21 19 18 38 38 H 1.08996 * 109.46589 * 60.00212 * 21 19 18 39 39 H 1.09003 * 115.55554 * 328.60859 * 22 19 18 40 40 H 1.08999 * 117.49367 * 145.02134 * 23 22 19 41 41 H 1.09000 * 117.50023 * 359.97438 * 23 22 19 42 42 H 1.08999 * 117.50050 * 0.02562 * 24 22 19 43 43 H 1.09005 * 117.49573 * 214.98013 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1867 -0.1233 5 7 3.8715 0.6136 -1.4278 6 6 3.9079 -0.8405 -1.6020 7 6 5.1214 -1.3997 -0.9050 8 1 5.7793 -0.7426 -0.3557 9 6 5.3917 -2.7502 -0.9686 10 7 6.4509 -3.2382 -0.3608 11 14 4.2541 -3.8867 -1.9193 12 1 4.7132 -3.9811 -3.3284 13 1 4.2732 -5.2367 -1.3010 14 1 2.8716 -3.3457 -1.8843 15 16 4.2156 1.6095 -2.7053 16 8 3.4719 2.8021 -2.4961 17 8 4.0963 0.8147 -3.8771 18 7 5.8134 2.0276 -2.5845 19 6 6.8504 0.9998 -2.7039 20 1 6.4379 0.0323 -2.4174 21 6 7.3414 0.9364 -4.1516 22 6 8.0217 1.3476 -1.7829 23 6 9.2430 0.4265 -1.8146 24 6 8.3010 0.4069 -0.6091 25 1 -0.3634 0.4356 -0.9308 26 1 -0.3634 -1.0238 0.0881 27 1 -0.3634 0.5883 0.8426 28 1 1.7598 1.8146 0.9307 29 1 1.6208 1.8766 -0.8427 30 1 3.9100 0.5402 0.6680 31 1 3.9808 2.1752 -0.0319 32 1 3.0076 -1.2805 -1.1731 33 1 3.9576 -1.0780 -2.6646 34 1 6.6413 -4.1882 -0.4058 35 1 6.0626 2.9529 -2.4346 36 1 8.1133 0.1719 -4.2403 37 1 6.5070 0.6885 -4.8077 38 1 7.7539 1.9038 -4.4380 39 1 8.1980 2.4120 -1.6278 40 1 10.2227 0.8850 -1.6802 41 1 9.2119 -0.4275 -2.4912 42 1 7.6506 -0.4601 -0.4931 43 1 8.6610 0.8524 0.3183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336908778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:09 Heat of formation + Delta-G solvation = -120.284428 kcal Electronic energy + Delta-G solvation = -25705.161686 eV Core-core repulsion = 22105.437128 eV Total energy + Delta-G solvation = -3599.724558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.17909 -39.06592 -38.23539 -36.99425 -36.87064 -35.32162 -34.44527 -31.29667 -30.39533 -28.79898 -27.00035 -24.91069 -24.24545 -23.18682 -22.95252 -21.33470 -20.27721 -19.06267 -18.52120 -18.41433 -17.66737 -17.17501 -17.04469 -16.48031 -16.10103 -15.71041 -15.39421 -15.16773 -15.02380 -14.53825 -14.36052 -14.03399 -13.68326 -13.56100 -13.48617 -13.36285 -13.29874 -13.08542 -12.99155 -12.68662 -12.66539 -12.47382 -12.19764 -12.08086 -12.04200 -11.84344 -11.67978 -11.39659 -11.16492 -10.90686 -10.65037 -10.51458 -10.29859 -9.67501 -8.16783 -6.15465 -0.29391 1.37581 1.42324 1.51097 1.96423 2.42238 2.60713 2.98422 3.05731 3.18123 3.44647 3.83296 3.93860 4.15451 4.20457 4.23899 4.32818 4.41894 4.50159 4.51197 4.56201 4.59518 4.62843 4.70208 4.81243 4.86263 4.92435 4.97028 5.06007 5.14292 5.21380 5.30913 5.38993 5.46596 5.51200 5.58336 5.63977 5.85315 6.28515 6.38682 6.45244 6.89148 7.46246 8.95706 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.008413 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.503172 B = 3327.534855 C = 4752.563457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.983 5.983 6 C 0.223 3.777 7 C -0.519 4.519 8 H 0.077 0.923 9 C 0.035 3.965 10 N -0.924 5.924 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.256 1.256 15 S 2.794 3.206 16 O -1.003 7.003 17 O -1.013 7.013 18 N -1.106 6.106 19 C 0.168 3.832 20 H 0.082 0.918 21 C -0.164 4.164 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.192 4.192 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.422 0.578 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 11.519 -0.283 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.004 3.996 5 N -0.823 5.823 6 C 0.098 3.902 7 C -0.558 4.558 8 H 0.095 0.905 9 C -0.164 4.164 10 N -0.564 5.564 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.180 1.180 15 S 2.802 3.198 16 O -0.987 6.987 17 O -0.997 6.997 18 N -0.868 5.868 19 C 0.061 3.939 20 H 0.100 0.900 21 C -0.223 4.223 22 C -0.163 4.163 23 C -0.202 4.202 24 C -0.229 4.229 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.895 11.275 -0.973 11.474 hybrid contribution -0.293 -0.694 0.009 0.753 sum -2.188 10.581 -0.965 10.848 Atomic orbital electron populations 1.22892 0.80485 1.03301 1.00594 1.88008 1.20703 1.28524 1.95469 1.23194 0.94414 0.84696 1.01383 1.21333 0.93330 0.99378 0.85608 1.57304 1.83132 1.17078 1.24760 1.19343 0.97697 0.76814 0.96349 1.21625 1.08782 0.93318 1.32079 0.90540 1.25319 0.95853 0.99277 0.95980 1.69958 1.27761 1.13781 1.44903 0.86398 0.81750 0.79448 0.79599 1.20153 1.21031 1.18021 1.01343 0.73279 0.71911 0.73224 1.93535 1.70381 1.47952 1.86881 1.93529 1.86726 1.71406 1.48012 1.55671 1.23761 1.17383 1.89943 1.20485 0.87506 0.90685 0.95255 0.89970 1.22244 1.01424 1.03262 0.95330 1.22392 0.96109 0.97799 1.00004 1.22932 0.94731 1.01468 1.01056 1.23142 1.04015 1.02425 0.93270 0.94219 0.89434 0.92188 0.89775 0.93487 0.89753 0.87477 0.94095 0.95511 0.92831 0.74224 0.91140 0.93470 0.90275 0.85415 0.86639 0.90006 0.89851 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -14.06 9.08 -148.98 -1.35 -15.42 16 3 C 0.04 1.24 6.28 71.98 0.45 1.69 16 4 C 0.13 4.23 5.67 86.38 0.49 4.72 16 5 N -0.98 -38.30 2.87 -519.83 -1.49 -39.79 16 6 C 0.22 10.38 4.31 85.63 0.37 10.75 16 7 C -0.52 -26.44 7.67 25.60 0.20 -26.25 16 8 H 0.08 4.04 6.15 -2.91 -0.02 4.02 16 9 C 0.04 1.91 5.47 84.66 0.46 2.38 16 10 N -0.92 -52.42 13.96 21.45 0.30 -52.12 16 11 Si 0.90 43.17 27.43 68.60 1.88 45.06 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.26 -11.94 6.60 99.48 0.66 -11.29 16 15 S 2.79 103.51 5.97 -56.49 -0.34 103.18 16 16 O -1.00 -37.09 17.06 -128.00 -2.18 -39.28 16 17 O -1.01 -44.69 15.73 -128.00 -2.01 -46.70 16 18 N -1.11 -33.29 5.53 -169.37 -0.94 -34.22 16 19 C 0.17 5.50 3.06 45.00 0.14 5.64 16 20 H 0.08 3.41 5.58 -2.39 -0.01 3.39 16 21 C -0.16 -4.91 9.33 71.98 0.67 -4.23 16 22 C -0.14 -4.02 5.43 -10.79 -0.06 -4.08 16 23 C -0.16 -4.58 9.71 30.60 0.30 -4.28 16 24 C -0.19 -6.36 10.18 30.59 0.31 -6.05 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.44 7.84 -2.39 -0.02 1.42 16 30 H 0.08 2.98 7.80 -2.39 -0.02 2.96 16 31 H 0.11 2.82 7.81 -2.38 -0.02 2.80 16 32 H 0.04 1.98 5.87 -2.39 -0.01 1.97 16 33 H 0.03 1.33 6.01 -2.39 -0.01 1.31 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.42 9.72 8.79 -96.75 -0.85 8.87 16 36 H 0.07 2.01 7.11 -2.39 -0.02 1.99 16 37 H 0.05 1.59 7.58 -2.39 -0.02 1.57 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.13 2.81 8.08 -2.39 -0.02 2.79 16 40 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 2.51 7.42 -2.39 -0.02 2.49 16 42 H 0.08 3.66 6.11 -2.39 -0.01 3.65 16 43 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -66.00 353.99 -1.44 -67.44 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.11 Total: 29.72 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.58 Total: -17.86 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -2.13 Total: -126.13 kcal Atomic # 8 Polarization: -95.84 SS G_CDS: -5.55 Total: -101.39 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.34 Total: 103.18 kcal Total: -66.00 -1.44 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336908778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.845 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds