Wall clock time and date at job start Fri Apr 10 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46504 * 119.99768 * 275.00333 * 3 2 1 5 5 C 1.53000 * 117.50168 * 8.61714 * 4 3 2 6 6 C 1.52998 * 117.49923 * 299.99335 * 4 3 2 7 7 S 1.65594 * 120.00086 * 94.99557 * 3 2 1 8 8 O 1.42102 * 106.40753 * 203.54193 * 7 3 2 9 9 O 1.42099 * 106.40296 * 336.46577 * 7 3 2 10 10 N 1.65606 * 107.21631 * 90.00079 * 7 3 2 11 11 C 1.46493 * 120.00287 * 270.00149 * 10 7 3 12 12 C 1.50703 * 109.47250 * 94.99657 * 11 10 7 13 13 H 1.08003 * 120.00052 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00017 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00502 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99905 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47066 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47069 * 119.99884 * 16 14 12 19 19 H 1.48502 * 109.47087 * 239.99768 * 16 14 12 20 20 C 1.46500 * 119.99594 * 90.00286 * 10 7 3 21 21 C 1.53001 * 109.47366 * 95.00095 * 20 10 7 22 22 O 1.42903 * 109.46794 * 64.99700 * 21 20 10 23 23 C 1.42907 * 113.99574 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 29 29 H 1.09007 * 115.54962 * 154.33130 * 4 3 2 30 30 H 1.08998 * 117.49701 * 0.02562 * 5 4 3 31 31 H 1.08993 * 117.49646 * 145.02467 * 5 4 3 32 32 H 1.08993 * 117.50121 * 214.98731 * 6 4 3 33 33 H 1.09003 * 117.49244 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.47589 * 214.99911 * 11 10 7 35 35 H 1.09005 * 109.47288 * 335.00033 * 11 10 7 36 36 H 0.97002 * 120.00638 * 180.02562 * 15 14 12 37 37 H 1.09008 * 109.46770 * 215.00366 * 20 10 7 38 38 H 1.09004 * 109.47628 * 334.99638 * 20 10 7 39 39 H 1.09003 * 109.47154 * 184.99623 * 21 20 10 40 40 H 1.08996 * 109.47189 * 304.99794 * 21 20 10 41 41 H 1.08995 * 109.47303 * 60.00126 * 23 22 21 42 42 H 1.08997 * 109.46652 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47045 * 299.99503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 1.5921 1.4509 -2.5241 6 6 3.1058 1.5251 -2.3138 7 16 2.4121 2.1202 1.4286 8 8 2.3056 3.5187 1.1998 9 8 1.6868 1.4415 2.4447 10 7 4.0144 1.8138 1.7137 11 6 4.4090 0.6239 2.4718 12 6 4.7354 -0.4950 1.5164 13 1 4.6571 -0.3355 0.4511 14 6 5.1339 -1.7221 2.0023 15 7 5.2298 -1.9162 3.2996 16 14 5.5392 -3.1088 0.8181 17 1 5.3552 -2.6371 -0.5779 18 1 6.9489 -3.5321 1.0153 19 1 4.6362 -4.2593 1.0755 20 6 5.0371 2.7326 1.2079 21 6 5.4099 3.7339 2.3031 22 8 6.0274 3.0423 3.3905 23 6 6.4170 3.8907 4.4725 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.0952 3.1945 -1.1909 30 1 1.1153 0.4771 -2.4126 31 1 1.1565 2.1039 -3.2802 32 1 3.6660 2.2268 -2.9317 33 1 3.6255 0.6001 -2.0639 34 1 5.2864 0.8528 3.0765 35 1 3.5891 0.3188 3.1220 36 1 5.5105 -2.7795 3.6415 37 1 5.9220 2.1666 0.9166 38 1 4.6478 3.2690 0.3425 39 1 6.1042 4.4713 1.9002 40 1 4.5101 4.2372 2.6567 41 1 5.5384 4.3976 4.8713 42 1 6.8770 3.2903 5.2574 43 1 7.1324 4.6309 4.1144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336920409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:16 Heat of formation + Delta-G solvation = -113.007400 kcal Electronic energy + Delta-G solvation = -25710.264657 eV Core-core repulsion = 22110.855655 eV Total energy + Delta-G solvation = -3599.409002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.26163 -39.07133 -38.35036 -36.94288 -36.86059 -34.77071 -34.50210 -31.03546 -30.76025 -28.44598 -26.99201 -24.60248 -24.43310 -23.30905 -23.14948 -22.14661 -19.74440 -18.94574 -18.64691 -18.27286 -17.49205 -17.20184 -16.97506 -16.47960 -16.13595 -15.83548 -15.58627 -15.04978 -14.81743 -14.48366 -14.42589 -13.85042 -13.72867 -13.52595 -13.40164 -13.23626 -13.19442 -13.03826 -12.94071 -12.70339 -12.66166 -12.54435 -12.26368 -12.22527 -11.99325 -11.91563 -11.89163 -11.81031 -11.59763 -11.18870 -10.58327 -10.48206 -9.79318 -9.56363 -8.09841 -6.22679 -0.31463 1.43283 1.44445 1.55644 1.94829 2.45107 2.54062 2.97020 2.99126 3.22003 3.35644 3.84227 3.97703 4.02009 4.13607 4.17083 4.20168 4.38206 4.40813 4.45650 4.47649 4.54528 4.58244 4.61045 4.83636 4.85380 4.89859 4.90967 5.05107 5.08252 5.16801 5.31474 5.39065 5.39779 5.48612 5.59638 5.77276 5.83562 6.03639 6.19925 6.38915 6.90315 7.46107 8.98659 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.008821 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.292886 B = 3173.521161 C = 4904.823802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.970 5.970 4 C 0.053 3.947 5 C -0.160 4.160 6 C -0.190 4.190 7 S 2.793 3.207 8 O -1.003 7.003 9 O -1.015 7.015 10 N -0.989 5.989 11 C 0.267 3.733 12 C -0.530 4.530 13 H 0.071 0.929 14 C 0.009 3.991 15 N -0.930 5.930 16 Si 0.957 3.043 17 H -0.256 1.256 18 H -0.285 1.285 19 H -0.283 1.283 20 C 0.129 3.871 21 C 0.041 3.959 22 O -0.409 6.409 23 C 0.024 3.976 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 9.448 -11.237 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.808 5.808 4 C -0.054 4.054 5 C -0.199 4.199 6 C -0.230 4.230 7 S 2.803 3.197 8 O -0.987 6.987 9 O -0.999 6.999 10 N -0.829 5.829 11 C 0.143 3.857 12 C -0.570 4.570 13 H 0.090 0.910 14 C -0.190 4.190 15 N -0.570 5.570 16 Si 0.782 3.218 17 H -0.179 1.179 18 H -0.211 1.211 19 H -0.209 1.209 20 C 0.003 3.997 21 C -0.037 4.037 22 O -0.328 6.328 23 C -0.072 4.072 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.158 0.842 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.620 9.632 -10.507 14.706 hybrid contribution 0.585 -0.968 0.129 1.138 sum -3.035 8.664 -10.378 13.856 Atomic orbital electron populations 1.22238 0.94755 1.03241 1.02289 1.21253 0.95093 0.81086 1.03332 1.57370 1.78874 1.23460 1.21077 1.21742 1.07621 0.95866 0.80156 1.23413 0.96137 1.03149 0.97178 1.23436 0.93530 1.03751 1.02249 1.01384 0.73068 0.72320 0.72879 1.93483 1.87104 1.31565 1.86530 1.93520 1.72143 1.76486 1.57753 1.57571 1.23158 1.34510 1.67636 1.18700 0.95507 0.80753 0.90729 1.21849 1.44972 0.96231 0.93929 0.91044 1.25806 0.95557 1.01200 0.96462 1.70106 1.48540 1.24613 1.13782 0.85528 0.77492 0.78981 0.79780 1.17917 1.21077 1.20924 1.21346 0.92955 0.90438 0.94972 1.23194 0.96936 0.95166 0.88439 1.88055 1.79604 1.35743 1.29412 1.22889 0.99245 0.95305 0.89739 0.90042 0.94241 0.90182 0.92167 0.89053 0.84183 0.87915 0.85669 0.86180 0.89797 0.95111 0.97675 0.92873 0.89792 0.87385 0.89399 0.94195 0.94152 0.89703 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 10.01 71.98 0.72 -3.87 16 2 C 0.12 3.87 5.33 86.38 0.46 4.33 16 3 N -0.97 -32.40 3.18 -493.37 -1.57 -33.97 16 4 C 0.05 1.34 6.40 44.99 0.29 1.63 16 5 C -0.16 -3.01 9.26 30.59 0.28 -2.73 16 6 C -0.19 -4.12 10.12 30.59 0.31 -3.81 16 7 S 2.79 114.96 6.02 -56.49 -0.34 114.62 16 8 O -1.00 -40.09 15.89 -128.00 -2.03 -42.12 16 9 O -1.01 -50.15 15.66 -128.00 -2.00 -52.16 16 10 N -0.99 -42.26 2.81 -519.84 -1.46 -43.72 16 11 C 0.27 14.07 5.27 85.64 0.45 14.52 16 12 C -0.53 -28.08 9.38 25.60 0.24 -27.84 16 13 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 14 C 0.01 0.47 5.46 84.65 0.46 0.93 16 15 N -0.93 -55.39 13.29 21.44 0.28 -55.10 16 16 Si 0.96 42.48 29.54 68.60 2.03 44.51 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.13 4.47 5.79 86.38 0.50 4.97 16 21 C 0.04 1.33 6.28 71.98 0.45 1.78 16 22 O -0.41 -15.53 9.02 -148.98 -1.34 -16.87 16 23 C 0.02 0.69 11.01 113.37 1.25 1.94 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.78 6.96 -2.39 -0.02 1.77 16 27 H 0.06 2.46 7.61 -2.39 -0.02 2.44 16 28 H 0.09 2.60 6.56 -2.39 -0.02 2.59 16 29 H 0.14 3.39 7.37 -2.38 -0.02 3.38 16 30 H 0.10 1.94 5.74 -2.39 -0.01 1.92 16 31 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 34 H 0.03 1.77 6.60 -2.39 -0.02 1.75 16 35 H 0.01 0.31 6.92 -2.38 -0.02 0.30 16 36 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.08 2.99 8.11 -2.38 -0.02 2.97 16 38 H 0.11 3.04 7.61 -2.38 -0.02 3.02 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.53 361.98 -0.04 -71.58 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.98 Total: 21.38 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.42 Total: -8.14 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -2.75 Total: -132.80 kcal Atomic # 8 Polarization: -105.77 SS G_CDS: -5.38 Total: -111.15 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 114.96 SS G_CDS: -0.34 Total: 114.62 kcal Total: -71.53 -0.04 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336920409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.432 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds