Wall clock time and date at job start Fri Apr 10 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.46932 * 120.62619 * 269.72143 * 16 13 3 18 18 C 1.52760 * 109.00503 * 233.58133 * 17 16 13 19 19 C 1.53039 * 109.38604 * 305.58913 * 18 17 16 20 20 C 1.53035 * 109.53626 * 61.24064 * 19 18 17 21 21 C 1.53006 * 109.49665 * 178.68513 * 20 19 18 22 22 O 1.42898 * 109.52911 * 58.60417 * 20 19 18 23 23 C 1.46921 * 120.63560 * 89.99557 * 16 13 3 24 24 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 25 25 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 26 26 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 28 28 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 29 29 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 30 30 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 31 31 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.58651 * 353.41500 * 17 16 13 33 33 H 1.08993 * 109.58931 * 113.84356 * 17 16 13 34 34 H 1.09005 * 109.56331 * 185.54910 * 18 17 16 35 35 H 1.09007 * 109.35899 * 65.50254 * 18 17 16 36 36 H 1.08994 * 109.45924 * 301.21719 * 19 18 17 37 37 H 1.08996 * 109.45947 * 181.26270 * 19 18 17 38 38 H 1.08996 * 109.47066 * 179.83526 * 21 20 19 39 39 H 1.09000 * 109.46891 * 299.83956 * 21 20 19 40 40 H 1.08998 * 109.46717 * 59.83583 * 21 20 19 41 41 H 0.96702 * 114.00130 * 60.14289 * 22 20 19 42 42 H 1.08997 * 109.59229 * 246.15935 * 23 16 13 43 43 H 1.09000 * 109.58380 * 6.44427 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 -0.4316 4.0082 3.1189 9 14 2.2076 3.6998 3.9031 10 1 2.9462 4.9208 3.4919 11 1 1.7567 3.8446 5.3105 12 1 3.1006 2.5189 3.7884 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 5.0513 2.7290 -1.2182 18 6 5.9478 3.1431 -2.3837 19 6 6.4923 1.8913 -3.0755 20 6 5.3288 1.0652 -3.6286 21 6 5.8757 -0.1692 -4.3484 22 8 4.5744 1.8579 -4.5475 23 6 4.4256 0.6244 -2.4723 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.9080 2.8919 1.1512 30 1 2.4690 1.4183 2.0480 31 1 -0.5115 4.5281 3.9339 32 1 4.5823 3.6136 -0.7874 33 1 5.6514 2.2254 -0.4604 34 1 6.7780 3.7428 -2.0105 35 1 5.3667 3.7288 -3.0961 36 1 7.0524 1.2937 -2.3565 37 1 7.1499 2.1854 -3.8934 38 1 5.0466 -0.7588 -4.7396 39 1 6.5183 0.1448 -5.1710 40 1 6.4519 -0.7730 -3.6474 41 1 5.0844 2.1722 -5.3067 42 1 4.9736 -0.0544 -1.8188 43 1 3.5438 0.1196 -2.8667 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336933156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:22 Heat of formation + Delta-G solvation = -156.530642 kcal Electronic energy + Delta-G solvation = -25686.823411 eV Core-core repulsion = 22085.527099 eV Total energy + Delta-G solvation = -3601.296312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35609 -38.37409 -37.77812 -36.83933 -36.61815 -34.59899 -33.08843 -32.50729 -31.74133 -29.10394 -27.80300 -25.62902 -24.34253 -23.35838 -23.08603 -21.24307 -19.87984 -19.07789 -18.62834 -18.32228 -17.50465 -17.19178 -16.54222 -16.12647 -15.72385 -15.52237 -15.23048 -15.06667 -14.65656 -14.58203 -14.47818 -14.33751 -13.82256 -13.65255 -13.40578 -13.23816 -13.11519 -13.03972 -12.88275 -12.86469 -12.74322 -12.71613 -12.64657 -12.18145 -12.01266 -11.96749 -11.90251 -11.74291 -11.50268 -11.32527 -10.74715 -10.70653 -9.98892 -9.76296 -8.25020 -6.29743 -0.39573 1.37107 1.41524 1.49667 2.05200 2.37775 2.56522 3.08223 3.28496 3.36259 3.77200 3.88167 3.92633 3.96332 4.11657 4.16270 4.40979 4.41800 4.47981 4.54788 4.65117 4.71792 4.74124 4.83643 4.84808 4.87086 4.92570 4.95254 5.02857 5.05771 5.19026 5.23786 5.37690 5.42498 5.42742 5.50692 5.52652 5.64004 5.90428 6.35662 6.73595 6.98752 7.32228 8.92415 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.005402 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.808604 B = 5182.086630 C = 5820.043193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 N -0.995 5.995 4 C 0.235 3.765 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.226 1.226 13 S 2.788 3.212 14 O -1.007 7.007 15 O -1.013 7.013 16 N -0.995 5.995 17 C 0.107 3.893 18 C -0.127 4.127 19 C -0.133 4.133 20 C 0.111 3.889 21 C -0.169 4.169 22 O -0.580 6.580 23 C 0.121 3.879 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.266 0.734 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.387 0.613 42 H 0.114 0.886 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.945 -11.234 -11.344 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 N -0.835 5.835 4 C 0.111 3.889 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.148 1.148 13 S 2.799 3.201 14 O -0.991 6.991 15 O -0.997 6.997 16 N -0.836 5.836 17 C -0.018 4.018 18 C -0.167 4.167 19 C -0.170 4.170 20 C 0.069 3.931 21 C -0.227 4.227 22 O -0.388 6.388 23 C -0.004 4.004 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.236 0.764 42 H 0.131 0.869 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.783 -10.769 -11.322 25.210 hybrid contribution -0.007 0.775 0.371 0.860 sum 19.777 -9.994 -10.951 24.717 Atomic orbital electron populations 1.22232 0.97540 1.02333 1.00973 1.21287 0.93973 0.80763 1.03721 1.57625 1.79322 1.24099 1.22499 1.19223 0.95174 0.91799 0.82753 1.21736 0.96719 1.31911 1.07083 0.95052 1.25940 0.99324 0.94506 0.99478 1.70083 1.27075 1.35958 1.26061 0.85812 0.79601 0.80657 0.77556 1.19602 1.20678 1.14822 1.01499 0.73667 0.72412 0.72549 1.93487 1.71500 1.76316 1.57777 1.93530 1.86419 1.33531 1.86239 1.57899 1.23402 1.34758 1.67584 1.21589 0.89910 0.92582 0.97672 1.21727 0.99173 0.98703 0.97052 1.22142 0.96856 0.96340 1.01698 1.21697 0.90988 0.91452 0.88965 1.22382 1.01721 0.97018 1.01617 1.86656 1.42031 1.71902 1.38227 1.21784 1.00239 0.86223 0.92184 0.93559 0.95327 0.89290 0.89236 0.88309 0.95176 0.92415 0.92534 0.91568 0.88684 0.88570 0.93132 0.88826 0.89411 0.92448 0.90386 0.89529 0.76406 0.86857 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.51 9.83 71.98 0.71 -5.80 16 2 C 0.13 4.27 6.09 86.38 0.53 4.80 16 3 N -1.00 -40.80 2.86 -519.85 -1.48 -42.28 16 4 C 0.24 10.90 4.19 85.63 0.36 11.26 16 5 C -0.54 -31.40 8.97 25.60 0.23 -31.17 16 6 H 0.03 2.09 7.13 -2.91 -0.02 2.07 16 7 C 0.00 0.28 5.47 84.66 0.46 0.74 16 8 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 9 Si 0.94 42.89 27.47 68.60 1.88 44.77 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.23 -8.77 6.54 99.48 0.65 -8.12 16 13 S 2.79 117.21 6.05 -56.49 -0.34 116.87 16 14 O -1.01 -45.38 15.70 -128.00 -2.01 -47.39 16 15 O -1.01 -52.20 15.69 -128.00 -2.01 -54.21 16 16 N -1.00 -29.57 3.29 -513.85 -1.69 -31.26 16 17 C 0.11 2.72 6.45 86.22 0.56 3.28 16 18 C -0.13 -2.47 5.92 30.53 0.18 -2.29 16 19 C -0.13 -1.78 4.89 30.62 0.15 -1.63 16 20 C 0.11 1.95 1.01 -10.71 -0.01 1.94 16 21 C -0.17 -1.90 8.82 71.98 0.64 -1.26 16 22 O -0.58 -13.44 12.18 -148.98 -1.81 -15.26 16 23 C 0.12 2.70 5.43 86.36 0.47 3.17 16 24 H 0.05 2.07 6.59 -2.39 -0.02 2.05 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.09 2.48 7.61 -2.39 -0.02 2.47 16 28 H 0.10 2.76 8.00 -2.39 -0.02 2.74 16 29 H 0.03 1.38 7.04 -2.39 -0.02 1.37 16 30 H 0.06 2.39 7.06 -2.39 -0.02 2.37 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 32 H 0.07 2.07 6.91 -2.39 -0.02 2.05 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.22 7.61 -2.38 -0.02 1.20 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.39 5.43 9.05 -74.06 -0.67 4.76 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 2.06 6.92 -2.39 -0.02 2.04 16 Total: -1.00 -84.77 348.67 -2.63 -87.40 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.27 Total: 19.11 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.27 Total: -16.97 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -2.88 Total: -134.31 kcal Atomic # 8 Polarization: -111.03 SS G_CDS: -5.83 Total: -116.86 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 117.21 SS G_CDS: -0.34 Total: 116.87 kcal Total: -84.77 -2.63 -87.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336933156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.131 kcal (2) G-P(sol) polarization free energy of solvation -84.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds