Wall clock time and date at job start Fri Apr 10 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47247 * 2 1 4 4 C 1.46506 * 119.99753 * 84.99906 * 3 2 1 5 5 C 1.50703 * 109.47289 * 275.00143 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 S 1.65602 * 120.00241 * 265.00554 * 3 2 1 14 14 O 1.42097 * 106.40599 * 23.53509 * 13 3 2 15 15 O 1.42097 * 106.40158 * 156.46000 * 13 3 2 16 16 N 1.65602 * 107.21332 * 269.99490 * 13 3 2 17 17 C 1.47026 * 125.64671 * 90.02912 * 16 13 3 18 18 C 1.54320 * 107.27225 * 181.02140 * 17 16 13 19 19 C 1.55160 * 102.94276 * 22.19009 * 18 17 16 20 20 H 1.08995 * 111.00068 * 82.61016 * 19 18 17 21 21 C 1.53001 * 111.00062 * 206.42694 * 19 18 17 22 22 H 1.09005 * 109.46782 * 178.55189 * 21 19 18 23 23 C 1.52998 * 109.47263 * 298.54143 * 21 19 18 24 24 O 1.42898 * 109.47428 * 58.54677 * 21 19 18 25 25 C 1.47428 * 125.65216 * 269.71384 * 16 13 3 26 26 H 1.08994 * 109.47298 * 299.99957 * 1 2 3 27 27 H 1.09004 * 109.47465 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46951 * 240.00588 * 2 1 3 30 30 H 1.08998 * 109.46978 * 120.00530 * 2 1 3 31 31 H 1.09001 * 109.47060 * 35.00593 * 4 3 2 32 32 H 1.09004 * 109.47073 * 155.00082 * 4 3 2 33 33 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.87954 * 300.43434 * 17 16 13 35 35 H 1.08998 * 109.88067 * 61.44333 * 17 16 13 36 36 H 1.08999 * 110.72285 * 140.55628 * 18 17 16 37 37 H 1.09004 * 110.72047 * 263.82926 * 18 17 16 38 38 H 1.09006 * 109.46748 * 60.00414 * 23 21 19 39 39 H 1.08994 * 109.47198 * 180.02562 * 23 21 19 40 40 H 1.09003 * 109.47532 * 300.00960 * 23 21 19 41 41 H 0.96698 * 113.99883 * 299.99719 * 24 21 19 42 42 H 1.08999 * 110.36857 * 274.75131 * 25 16 13 43 43 H 1.08996 * 110.35975 * 37.07217 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7288 1.6357 6 1 -0.0227 2.5941 0.9948 7 6 0.7224 3.4671 2.7945 8 7 1.7681 3.6306 3.5753 9 14 -0.9164 4.2364 3.2550 10 1 -1.9383 3.1698 3.4075 11 1 -0.7745 4.9736 4.5363 12 1 -1.3388 5.1776 2.1869 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 7 4.0143 1.8138 -1.7137 17 6 4.5476 0.6626 -2.4568 18 6 6.0861 0.7819 -2.4440 19 6 6.3543 1.6872 -1.2128 20 1 6.3516 1.1046 -0.2916 21 6 7.6699 2.4521 -1.3709 22 1 7.8207 3.0981 -0.5059 23 6 8.8287 1.4582 -1.4730 24 8 7.6189 3.2478 -2.5567 25 6 5.1420 2.6534 -1.2699 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.4690 1.4182 2.0481 32 1 2.9080 2.8918 1.1514 33 1 1.6882 4.1504 4.3903 34 1 4.2436 -0.2649 -1.9715 35 1 4.1804 0.6816 -3.4829 36 1 6.5477 -0.1966 -2.3111 37 1 6.4437 1.2573 -3.3575 38 1 8.6779 0.8121 -2.3378 39 1 9.7659 2.0031 -1.5851 40 1 8.8676 0.8512 -0.5684 41 1 7.4865 2.7375 -3.3673 42 1 5.3248 3.4532 -1.9875 43 1 4.9407 3.0675 -0.2820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336945094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:26 Heat of formation + Delta-G solvation = -131.027161 kcal Electronic energy + Delta-G solvation = -25127.501159 eV Core-core repulsion = 21527.310761 eV Total energy + Delta-G solvation = -3600.190398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.45195 -36.62101 -36.46890 -36.02375 -35.11969 -32.57992 -32.01030 -29.84277 -29.63365 -28.69367 -26.72828 -23.46247 -22.75767 -22.43952 -21.74843 -20.21159 -18.51887 -17.32328 -17.14308 -16.66520 -16.37413 -16.04100 -15.34199 -15.02600 -14.50477 -14.16174 -13.89355 -13.55114 -13.43626 -13.26688 -12.96290 -12.88962 -12.56400 -12.22544 -12.15911 -11.97691 -11.79240 -11.53044 -11.47267 -11.25322 -11.23050 -11.15108 -10.97642 -10.96641 -10.83984 -10.66532 -10.43761 -10.41308 -10.12809 -9.90101 -9.61990 -8.78479 -8.41181 -8.06901 -6.04646 -4.07590 1.18004 3.34617 3.38297 3.42989 3.52763 4.10285 4.14452 4.30634 4.45921 4.48882 4.70976 4.91069 4.98780 5.02935 5.17359 5.29307 5.36168 5.40187 5.42887 5.51463 5.58419 5.65492 5.76936 5.83921 5.85969 5.93132 5.94757 6.02643 6.15495 6.21166 6.34046 6.43525 6.55407 6.75632 6.99255 7.23507 7.42995 7.47307 7.64870 7.93265 8.23026 8.94093 9.57041 11.04135 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.004826 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.009019 B = 5800.274867 C = 6580.589825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.791 3.209 14 O -0.993 6.993 15 O -0.959 6.959 16 N -1.024 6.024 17 C 0.124 3.876 18 C -0.124 4.124 19 C -0.134 4.134 20 H 0.095 0.905 21 C 0.110 3.890 22 H 0.104 0.896 23 C -0.183 4.183 24 O -0.559 6.559 25 C 0.129 3.871 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.371 0.629 42 H 0.077 0.923 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.368 -8.933 -9.974 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.801 3.199 14 O -0.977 6.977 15 O -0.942 6.942 16 N -0.863 5.863 17 C -0.002 4.002 18 C -0.163 4.163 19 C -0.154 4.154 20 H 0.113 0.887 21 C 0.051 3.949 22 H 0.122 0.878 23 C -0.241 4.241 24 O -0.365 6.365 25 C 0.003 3.997 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.219 0.781 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.837 -7.836 -9.908 17.311 hybrid contribution -0.763 -0.326 0.346 0.899 sum 11.074 -8.162 -9.562 16.754 Atomic orbital electron populations 1.22258 0.96351 1.00820 1.03686 1.20934 0.94848 0.82357 1.00869 1.57871 1.78056 1.23005 1.24501 1.19032 0.97480 0.90818 0.78957 1.21482 0.96304 1.31911 1.06739 0.91989 1.24919 0.96836 0.95989 0.96223 1.69905 1.29314 1.40709 1.13694 0.86612 0.83891 0.79573 0.77719 1.20192 1.21208 1.20019 1.01725 0.71686 0.73601 0.72927 1.93524 1.69774 1.76590 1.57811 1.93628 1.84900 1.30098 1.85608 1.59442 1.24090 1.34275 1.68476 1.21569 0.93688 0.88629 0.96329 1.22658 0.95260 1.00255 0.98141 1.23193 0.95290 0.97267 0.99650 0.88669 1.21801 0.92070 0.92354 0.88687 0.87776 1.22488 0.99039 0.99814 1.02737 1.86628 1.95535 1.37723 1.16623 1.21967 0.84097 0.92832 1.00774 0.90252 0.92854 0.93101 0.92387 0.91197 0.94862 0.94703 0.92701 0.92027 0.91515 0.90163 0.90999 0.92205 0.91876 0.91440 0.78099 0.90506 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.83 37.16 0.37 -2.72 16 2 C 0.14 2.40 6.09 -4.05 -0.02 2.38 16 3 N -0.99 -20.72 2.86 -115.66 -0.33 -21.05 16 4 C 0.26 6.44 5.12 -5.19 -0.03 6.41 16 5 C -0.52 -14.59 8.41 -34.44 -0.29 -14.88 16 6 H 0.06 1.72 6.89 -52.49 -0.36 1.36 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 S 2.79 57.42 6.26 -107.50 -0.67 56.74 16 14 O -0.99 -21.17 16.69 -57.17 -0.95 -22.13 16 15 O -0.96 -23.73 16.69 -57.17 -0.95 -24.69 16 16 N -1.02 -16.16 3.75 -111.29 -0.42 -16.58 16 17 C 0.12 1.48 6.99 -3.06 -0.02 1.46 16 18 C -0.12 -1.07 5.30 -24.90 -0.13 -1.20 16 19 C -0.13 -1.36 3.01 -88.35 -0.27 -1.63 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C 0.11 1.00 3.54 -26.73 -0.09 0.91 16 22 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.18 -1.26 9.33 37.16 0.35 -0.92 16 24 O -0.56 -5.66 12.25 -35.23 -0.43 -6.10 16 25 C 0.13 1.85 6.40 -2.41 -0.02 1.84 16 26 H 0.08 1.59 6.59 -51.93 -0.34 1.25 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.89 7.61 -51.93 -0.40 0.49 16 30 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 31 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 32 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.54 8.11 -51.93 -0.42 0.11 16 37 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 38 H 0.06 0.35 7.32 -51.93 -0.38 -0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.37 2.62 7.08 45.56 0.32 2.94 16 42 H 0.08 1.12 7.16 -51.93 -0.37 0.74 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -34.07 354.26 -9.40 -43.47 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.44 Total: 0.13 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.26 Total: -6.69 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.01 Total: -62.94 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -2.34 Total: -52.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.67 Total: 56.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.07 -9.40 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.559 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds