Wall clock time and date at job start Fri Apr 10 2020 17:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47247 * 2 1 4 4 C 1.46506 * 119.99753 * 84.99906 * 3 2 1 5 5 C 1.50703 * 109.47289 * 275.00143 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 S 1.65602 * 120.00241 * 265.00554 * 3 2 1 14 14 O 1.42097 * 106.40599 * 23.53509 * 13 3 2 15 15 O 1.42097 * 106.40158 * 156.46000 * 13 3 2 16 16 N 1.65602 * 107.21332 * 269.99490 * 13 3 2 17 17 C 1.47026 * 125.64671 * 90.02912 * 16 13 3 18 18 C 1.54320 * 107.27225 * 181.02140 * 17 16 13 19 19 C 1.55160 * 102.94276 * 22.19009 * 18 17 16 20 20 H 1.08995 * 111.00068 * 82.61016 * 19 18 17 21 21 C 1.53001 * 111.00062 * 206.42694 * 19 18 17 22 22 H 1.09005 * 109.46782 * 178.55189 * 21 19 18 23 23 C 1.52998 * 109.47263 * 298.54143 * 21 19 18 24 24 O 1.42898 * 109.47428 * 58.54677 * 21 19 18 25 25 C 1.47428 * 125.65216 * 269.71384 * 16 13 3 26 26 H 1.08994 * 109.47298 * 299.99957 * 1 2 3 27 27 H 1.09004 * 109.47465 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46951 * 240.00588 * 2 1 3 30 30 H 1.08998 * 109.46978 * 120.00530 * 2 1 3 31 31 H 1.09001 * 109.47060 * 35.00593 * 4 3 2 32 32 H 1.09004 * 109.47073 * 155.00082 * 4 3 2 33 33 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.87954 * 300.43434 * 17 16 13 35 35 H 1.08998 * 109.88067 * 61.44333 * 17 16 13 36 36 H 1.08999 * 110.72285 * 140.55628 * 18 17 16 37 37 H 1.09004 * 110.72047 * 263.82926 * 18 17 16 38 38 H 1.09006 * 109.46748 * 60.00414 * 23 21 19 39 39 H 1.08994 * 109.47198 * 180.02562 * 23 21 19 40 40 H 1.09003 * 109.47532 * 300.00960 * 23 21 19 41 41 H 0.96698 * 113.99883 * 299.99719 * 24 21 19 42 42 H 1.08999 * 110.36857 * 274.75131 * 25 16 13 43 43 H 1.08996 * 110.35975 * 37.07217 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7288 1.6357 6 1 -0.0227 2.5941 0.9948 7 6 0.7224 3.4671 2.7945 8 7 1.7681 3.6306 3.5753 9 14 -0.9164 4.2364 3.2550 10 1 -1.9383 3.1698 3.4075 11 1 -0.7745 4.9736 4.5363 12 1 -1.3388 5.1776 2.1869 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 7 4.0143 1.8138 -1.7137 17 6 4.5476 0.6626 -2.4568 18 6 6.0861 0.7819 -2.4440 19 6 6.3543 1.6872 -1.2128 20 1 6.3516 1.1046 -0.2916 21 6 7.6699 2.4521 -1.3709 22 1 7.8207 3.0981 -0.5059 23 6 8.8287 1.4582 -1.4730 24 8 7.6189 3.2478 -2.5567 25 6 5.1420 2.6534 -1.2699 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.4690 1.4182 2.0481 32 1 2.9080 2.8918 1.1514 33 1 1.6882 4.1504 4.3903 34 1 4.2436 -0.2649 -1.9715 35 1 4.1804 0.6816 -3.4829 36 1 6.5477 -0.1966 -2.3111 37 1 6.4437 1.2573 -3.3575 38 1 8.6779 0.8121 -2.3378 39 1 9.7659 2.0031 -1.5851 40 1 8.8676 0.8512 -0.5684 41 1 7.4865 2.7375 -3.3673 42 1 5.3248 3.4532 -1.9875 43 1 4.9407 3.0675 -0.2820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336945094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:25 Heat of formation + Delta-G solvation = -157.748972 kcal Electronic energy + Delta-G solvation = -25128.659904 eV Core-core repulsion = 21527.310761 eV Total energy + Delta-G solvation = -3601.349143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.33502 -38.34483 -37.72548 -37.38415 -36.88222 -34.66104 -32.85586 -31.46964 -30.55580 -29.58402 -28.69094 -24.73458 -24.21064 -23.63726 -23.19470 -21.03415 -19.95526 -18.89526 -18.66223 -18.27881 -17.72878 -17.24327 -16.78188 -16.34995 -15.86641 -15.45750 -15.09738 -14.80956 -14.70612 -14.56692 -14.39479 -14.10614 -13.99608 -13.70163 -13.36552 -13.22119 -13.17991 -13.04191 -12.90289 -12.87431 -12.78686 -12.72946 -12.39691 -12.28070 -12.17475 -12.11783 -11.68669 -11.64180 -11.52879 -11.39224 -10.90120 -10.58559 -10.02850 -9.80356 -8.19903 -6.29844 -0.41904 1.37327 1.41074 1.47749 2.02468 2.39365 2.57454 3.10917 3.16986 3.48136 3.58943 3.70587 3.89357 3.98153 4.24539 4.30279 4.40582 4.43320 4.45883 4.49747 4.60001 4.62832 4.70254 4.84503 4.87122 4.94847 4.99950 5.06614 5.10348 5.13717 5.16603 5.22826 5.39476 5.40682 5.42080 5.47143 5.58554 5.72585 5.97563 6.12155 6.77315 6.90488 7.37960 8.87881 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.004826 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.009019 B = 5800.274867 C = 6580.589825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 N -0.997 5.997 4 C 0.276 3.724 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.925 5.925 9 Si 0.951 3.049 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.280 1.280 13 S 2.802 3.198 14 O -1.002 7.002 15 O -1.011 7.011 16 N -1.021 6.021 17 C 0.108 3.892 18 C -0.112 4.112 19 C -0.123 4.123 20 H 0.098 0.902 21 C 0.112 3.888 22 H 0.091 0.909 23 C -0.175 4.175 24 O -0.577 6.577 25 C 0.120 3.880 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.384 0.616 42 H 0.072 0.928 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 -11.057 -10.873 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.838 5.838 4 C 0.153 3.847 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.776 3.224 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.206 1.206 13 S 2.813 3.187 14 O -0.987 6.987 15 O -0.995 6.995 16 N -0.863 5.863 17 C -0.016 4.016 18 C -0.150 4.150 19 C -0.143 4.143 20 H 0.117 0.883 21 C 0.053 3.947 22 H 0.109 0.891 23 C -0.232 4.232 24 O -0.386 6.386 25 C -0.005 4.005 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.832 -9.993 -10.826 19.537 hybrid contribution -1.033 0.305 0.549 1.209 sum 11.799 -9.687 -10.276 18.403 Atomic orbital electron populations 1.22235 0.96688 1.02610 1.01457 1.21254 0.94691 0.80828 1.03086 1.57760 1.78959 1.24150 1.22925 1.18573 0.95516 0.90251 0.80404 1.21804 0.97202 1.32221 1.06771 0.92759 1.25693 1.00107 0.96499 0.96316 1.69996 1.30989 1.41397 1.14104 0.85724 0.80328 0.78935 0.77448 1.18719 1.20145 1.20605 1.01021 0.72623 0.72378 0.72636 1.93496 1.70965 1.76376 1.57815 1.93554 1.86253 1.33479 1.86229 1.59020 1.22664 1.35918 1.68666 1.22005 0.96119 0.87409 0.96097 1.22712 0.92630 1.01702 0.97970 1.23145 0.93676 0.96516 1.00966 0.88337 1.21786 0.92299 0.92527 0.88135 0.89129 1.22408 0.97603 0.99322 1.03906 1.86608 1.95598 1.38864 1.17522 1.22108 0.85515 0.93918 0.98981 0.92985 0.94458 0.89334 0.89421 0.89592 0.95344 0.97212 0.92471 0.90690 0.91047 0.86853 0.88953 0.90401 0.91921 0.90744 0.76539 0.91017 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 9.83 71.98 0.71 -5.28 16 2 C 0.13 4.30 6.09 86.38 0.53 4.82 16 3 N -1.00 -42.12 2.86 -519.83 -1.48 -43.60 16 4 C 0.28 14.18 5.12 85.63 0.44 14.61 16 5 C -0.54 -30.84 8.41 25.60 0.22 -30.63 16 6 H 0.05 3.11 6.89 -2.91 -0.02 3.09 16 7 C 0.01 0.75 5.46 84.65 0.46 1.22 16 8 N -0.92 -54.73 13.29 21.45 0.28 -54.45 16 9 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 S 2.80 117.39 6.26 -56.49 -0.35 117.04 16 14 O -1.00 -42.51 16.69 -128.00 -2.14 -44.64 16 15 O -1.01 -52.48 16.69 -128.00 -2.14 -54.61 16 16 N -1.02 -31.87 3.75 -506.01 -1.90 -33.77 16 17 C 0.11 2.30 6.99 86.73 0.61 2.91 16 18 C -0.11 -1.50 5.30 31.78 0.17 -1.33 16 19 C -0.12 -2.29 3.01 -9.32 -0.03 -2.31 16 20 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.11 1.85 3.54 30.59 0.11 1.96 16 22 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 23 C -0.17 -1.87 9.33 71.98 0.67 -1.20 16 24 O -0.58 -10.80 12.25 -148.98 -1.82 -12.63 16 25 C 0.12 3.51 6.40 86.93 0.56 4.06 16 26 H 0.05 2.09 6.59 -2.39 -0.02 2.08 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 30 H 0.09 2.64 8.00 -2.39 -0.02 2.62 16 31 H 0.03 1.47 8.00 -2.39 -0.02 1.45 16 32 H 0.01 0.55 7.61 -2.38 -0.02 0.54 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 0.89 8.11 -2.39 -0.02 0.87 16 37 H 0.09 0.89 6.18 -2.38 -0.01 0.88 16 38 H 0.08 0.57 7.32 -2.38 -0.02 0.55 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.38 4.43 7.08 -74.06 -0.52 3.91 16 42 H 0.07 2.14 7.16 -2.39 -0.02 2.13 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.97 354.26 -2.62 -78.59 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.47 Total: 11.90 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.43 Total: -11.16 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -3.10 Total: -131.82 kcal Atomic # 8 Polarization: -105.79 SS G_CDS: -6.10 Total: -111.88 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 117.39 SS G_CDS: -0.35 Total: 117.04 kcal Total: -75.97 -2.62 -78.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.157 kcal (2) G-P(sol) polarization free energy of solvation -75.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds