Wall clock time and date at job start Fri Apr 10 2020 17:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46936 * 2 1 4 4 C 1.46491 * 119.99950 * 85.00330 * 3 2 1 5 5 C 1.50702 * 109.46957 * 274.99534 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 S 1.65604 * 119.99536 * 264.99951 * 3 2 1 14 14 O 1.42092 * 106.40380 * 23.54255 * 13 3 2 15 15 O 1.42101 * 106.39783 * 156.46152 * 13 3 2 16 16 N 1.65603 * 107.21518 * 270.00010 * 13 3 2 17 17 C 1.47417 * 125.64587 * 90.03331 * 16 13 3 18 18 C 1.54910 * 104.83284 * 204.08582 * 17 16 13 19 19 C 1.55161 * 101.58061 * 322.99182 * 18 17 16 20 20 H 1.08999 * 110.71576 * 277.13645 * 19 18 17 21 21 C 1.52999 * 110.72269 * 154.04108 * 19 18 17 22 22 H 1.09005 * 109.47111 * 301.45367 * 21 19 18 23 23 C 1.53000 * 109.46922 * 61.45170 * 21 19 18 24 24 O 1.42896 * 109.47272 * 181.45498 * 21 19 18 25 25 C 1.47017 * 125.64648 * 269.71628 * 16 13 3 26 26 H 1.09000 * 109.46902 * 299.99945 * 1 2 3 27 27 H 1.08998 * 109.47206 * 60.00216 * 1 2 3 28 28 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46902 * 240.00055 * 2 1 3 30 30 H 1.09005 * 109.46932 * 120.00043 * 2 1 3 31 31 H 1.09004 * 109.47166 * 154.99800 * 4 3 2 32 32 H 1.08994 * 109.47507 * 34.99507 * 4 3 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09000 * 110.36769 * 322.92322 * 17 16 13 35 35 H 1.09001 * 110.37051 * 85.24662 * 17 16 13 36 36 H 1.09000 * 111.00336 * 81.06028 * 18 17 16 37 37 H 1.08992 * 111.01044 * 204.91376 * 18 17 16 38 38 H 1.08990 * 109.47103 * 60.00594 * 23 21 19 39 39 H 1.09009 * 109.46876 * 180.02562 * 23 21 19 40 40 H 1.09002 * 109.47233 * 299.99996 * 23 21 19 41 41 H 0.96698 * 113.99746 * 299.99558 * 24 21 19 42 42 H 1.09004 * 109.88632 * 298.39910 * 25 16 13 43 43 H 1.09005 * 109.88368 * 59.56678 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7211 3.4629 2.7970 8 7 1.7668 3.6265 3.5777 9 14 -0.9197 4.2251 3.2616 10 1 -1.9381 3.1547 3.4116 11 1 -0.7791 4.9585 4.5453 12 1 -1.3465 5.1687 2.1972 13 16 2.4121 2.1202 -1.4288 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.5490 0.6594 -2.4588 18 6 5.9959 0.4843 -1.9340 19 6 6.4369 1.9590 -1.7384 20 1 6.7803 2.3869 -2.6802 21 6 7.5276 2.0608 -0.6703 22 1 7.1542 1.6552 0.2701 23 6 8.7552 1.2645 -1.1174 24 8 7.8892 3.4311 -0.4878 25 6 5.1389 2.6510 -1.2712 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.9080 2.8918 1.1512 32 1 2.4690 1.4183 2.0480 33 1 1.6860 4.1433 4.3946 34 1 3.9592 -0.2331 -2.2500 35 1 4.5562 0.8686 -3.5285 36 1 6.0054 -0.0552 -0.9869 37 1 6.6218 -0.0159 -2.6730 38 1 9.1285 1.6700 -2.0576 39 1 9.5321 1.3366 -0.3562 40 1 8.4793 0.2192 -1.2566 41 1 8.2307 3.8574 -1.2858 42 1 5.0625 3.6415 -1.7197 43 1 5.1350 2.7326 -0.1843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336945095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:30 Heat of formation + Delta-G solvation = -132.108258 kcal Electronic energy + Delta-G solvation = -25112.203869 eV Core-core repulsion = 21511.966592 eV Total energy + Delta-G solvation = -3600.237278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.25555 -36.68810 -36.58968 -36.01027 -35.11897 -32.55965 -32.17043 -29.80628 -29.39787 -28.71895 -26.71014 -23.22095 -22.73860 -22.36524 -21.72835 -20.66489 -18.52986 -17.25227 -17.06203 -16.61245 -16.28961 -16.04043 -15.28648 -15.10840 -14.44061 -14.22564 -13.85393 -13.58771 -13.28130 -13.04373 -12.95269 -12.83347 -12.66231 -12.25026 -12.17780 -11.96957 -11.81983 -11.51170 -11.46033 -11.31684 -11.22136 -11.11049 -10.96939 -10.96133 -10.90990 -10.70709 -10.42342 -10.39572 -10.02959 -9.88780 -9.60016 -8.80141 -8.39100 -8.05402 -6.02184 -4.05295 1.18239 3.35870 3.39676 3.44081 3.53290 4.06327 4.10938 4.45138 4.47635 4.52049 4.62202 4.95402 5.04841 5.11361 5.12615 5.29975 5.31539 5.41076 5.43147 5.52737 5.58807 5.68259 5.82057 5.85189 5.87731 5.91978 5.96584 6.01871 6.15492 6.18950 6.34604 6.44474 6.56085 6.76580 7.00254 7.26323 7.45151 7.53819 7.66685 7.95304 8.25238 8.96205 9.59094 11.06549 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005132 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.797817 B = 5455.001990 C = 6434.835981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.790 3.210 14 O -0.993 6.993 15 O -0.959 6.959 16 N -1.025 6.025 17 C 0.124 3.876 18 C -0.123 4.123 19 C -0.129 4.129 20 H 0.084 0.916 21 C 0.110 3.890 22 H 0.104 0.896 23 C -0.183 4.183 24 O -0.558 6.558 25 C 0.132 3.868 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.372 0.628 42 H 0.069 0.931 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.614 -8.479 -10.661 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.800 3.200 14 O -0.977 6.977 15 O -0.943 6.943 16 N -0.864 5.864 17 C -0.002 4.002 18 C -0.162 4.162 19 C -0.149 4.149 20 H 0.102 0.898 21 C 0.051 3.949 22 H 0.121 0.879 23 C -0.241 4.241 24 O -0.363 6.363 25 C 0.006 3.994 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.219 0.781 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.798 -7.978 -10.407 17.639 hybrid contribution -0.490 0.302 0.016 0.576 sum 11.308 -7.675 -10.391 17.168 Atomic orbital electron populations 1.22260 0.96351 1.00818 1.03690 1.20942 0.94849 0.82366 1.00870 1.57862 1.78019 1.22994 1.24506 1.19034 0.97506 0.90853 0.78913 1.21478 0.96276 1.32102 1.06614 0.92009 1.24924 0.96815 0.96005 0.96243 1.69912 1.29276 1.40745 1.13575 0.86616 0.83927 0.79541 0.77714 1.20209 1.21214 1.20046 1.01729 0.71691 0.73605 0.72939 1.93527 1.69717 1.76598 1.57836 1.93624 1.84923 1.30136 1.85602 1.59475 1.24051 1.34388 1.68479 1.21867 0.94226 0.88394 0.95731 1.22813 0.95634 0.95671 1.02070 1.22997 0.95673 0.96691 0.99554 0.89771 1.21965 0.92315 0.82134 0.98530 0.87857 1.22506 0.98644 1.01191 1.01752 1.86670 1.86034 1.24386 1.39199 1.21606 0.84002 0.93587 1.00206 0.90245 0.92859 0.93100 0.92413 0.91161 0.94616 0.94851 0.92694 0.90981 0.91759 0.90223 0.90144 0.92430 0.91803 0.91351 0.78103 0.91310 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.83 37.16 0.37 -2.73 16 2 C 0.14 2.41 6.09 -4.04 -0.02 2.38 16 3 N -0.99 -20.86 2.86 -115.66 -0.33 -21.19 16 4 C 0.26 6.51 5.12 -5.20 -0.03 6.49 16 5 C -0.53 -14.71 8.41 -34.44 -0.29 -15.00 16 6 H 0.06 1.73 6.89 -52.49 -0.36 1.37 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 S 2.79 57.64 6.26 -107.50 -0.67 56.97 16 14 O -0.99 -21.16 16.69 -57.17 -0.95 -22.11 16 15 O -0.96 -23.83 16.69 -57.17 -0.95 -24.79 16 16 N -1.03 -16.28 3.75 -111.42 -0.42 -16.70 16 17 C 0.12 1.48 6.98 -2.53 -0.02 1.46 16 18 C -0.12 -1.11 5.46 -24.58 -0.13 -1.24 16 19 C -0.13 -1.29 2.69 -88.78 -0.24 -1.52 16 20 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 21 C 0.11 1.06 3.00 -26.73 -0.08 0.98 16 22 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 23 C -0.18 -1.30 9.33 37.16 0.35 -0.95 16 24 O -0.56 -6.13 13.15 -35.23 -0.46 -6.59 16 25 C 0.13 1.92 6.42 -3.06 -0.02 1.90 16 26 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.88 7.61 -51.93 -0.40 0.48 16 30 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 31 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.07 0.43 7.30 -51.93 -0.38 0.05 16 41 H 0.37 2.58 9.04 45.56 0.41 2.99 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.18 7.80 -51.93 -0.41 0.78 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -34.71 358.88 -9.36 -44.07 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.47 Total: 0.09 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.22 Total: -6.57 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.01 Total: -63.47 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.37 Total: -53.49 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -0.67 Total: 56.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.71 -9.36 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.043 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds