Wall clock time and date at job start Fri Apr 10 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46936 * 2 1 4 4 C 1.46491 * 119.99950 * 85.00330 * 3 2 1 5 5 C 1.50702 * 109.46957 * 274.99534 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 S 1.65604 * 119.99536 * 264.99951 * 3 2 1 14 14 O 1.42092 * 106.40380 * 23.54255 * 13 3 2 15 15 O 1.42101 * 106.39783 * 156.46152 * 13 3 2 16 16 N 1.65603 * 107.21518 * 270.00010 * 13 3 2 17 17 C 1.47417 * 125.64587 * 90.03331 * 16 13 3 18 18 C 1.54910 * 104.83284 * 204.08582 * 17 16 13 19 19 C 1.55161 * 101.58061 * 322.99182 * 18 17 16 20 20 H 1.08999 * 110.71576 * 277.13645 * 19 18 17 21 21 C 1.52999 * 110.72269 * 154.04108 * 19 18 17 22 22 H 1.09005 * 109.47111 * 301.45367 * 21 19 18 23 23 C 1.53000 * 109.46922 * 61.45170 * 21 19 18 24 24 O 1.42896 * 109.47272 * 181.45498 * 21 19 18 25 25 C 1.47017 * 125.64648 * 269.71628 * 16 13 3 26 26 H 1.09000 * 109.46902 * 299.99945 * 1 2 3 27 27 H 1.08998 * 109.47206 * 60.00216 * 1 2 3 28 28 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46902 * 240.00055 * 2 1 3 30 30 H 1.09005 * 109.46932 * 120.00043 * 2 1 3 31 31 H 1.09004 * 109.47166 * 154.99800 * 4 3 2 32 32 H 1.08994 * 109.47507 * 34.99507 * 4 3 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09000 * 110.36769 * 322.92322 * 17 16 13 35 35 H 1.09001 * 110.37051 * 85.24662 * 17 16 13 36 36 H 1.09000 * 111.00336 * 81.06028 * 18 17 16 37 37 H 1.08992 * 111.01044 * 204.91376 * 18 17 16 38 38 H 1.08990 * 109.47103 * 60.00594 * 23 21 19 39 39 H 1.09009 * 109.46876 * 180.02562 * 23 21 19 40 40 H 1.09002 * 109.47233 * 299.99996 * 23 21 19 41 41 H 0.96698 * 113.99746 * 299.99558 * 24 21 19 42 42 H 1.09004 * 109.88632 * 298.39910 * 25 16 13 43 43 H 1.09005 * 109.88368 * 59.56678 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7288 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7211 3.4629 2.7970 8 7 1.7668 3.6265 3.5777 9 14 -0.9197 4.2251 3.2616 10 1 -1.9381 3.1547 3.4116 11 1 -0.7791 4.9585 4.5453 12 1 -1.3465 5.1687 2.1972 13 16 2.4121 2.1202 -1.4288 14 8 1.6868 1.4414 -2.4448 15 8 2.3056 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.5490 0.6594 -2.4588 18 6 5.9959 0.4843 -1.9340 19 6 6.4369 1.9590 -1.7384 20 1 6.7803 2.3869 -2.6802 21 6 7.5276 2.0608 -0.6703 22 1 7.1542 1.6552 0.2701 23 6 8.7552 1.2645 -1.1174 24 8 7.8892 3.4311 -0.4878 25 6 5.1389 2.6510 -1.2712 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.9080 2.8918 1.1512 32 1 2.4690 1.4183 2.0480 33 1 1.6860 4.1433 4.3946 34 1 3.9592 -0.2331 -2.2500 35 1 4.5562 0.8686 -3.5285 36 1 6.0054 -0.0552 -0.9869 37 1 6.6218 -0.0159 -2.6730 38 1 9.1285 1.6700 -2.0576 39 1 9.5321 1.3366 -0.3562 40 1 8.4793 0.2192 -1.2566 41 1 8.2307 3.8574 -1.2858 42 1 5.0625 3.6415 -1.7197 43 1 5.1350 2.7326 -0.1843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336945095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:29 Heat of formation + Delta-G solvation = -159.909853 kcal Electronic energy + Delta-G solvation = -25113.409437 eV Core-core repulsion = 21511.966592 eV Total energy + Delta-G solvation = -3601.442845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.17021 -38.34991 -37.72912 -37.57542 -36.88784 -34.66295 -33.07692 -31.46962 -30.31706 -29.60718 -28.69343 -24.72858 -24.05802 -23.56366 -23.12307 -21.50050 -19.98629 -18.88860 -18.65214 -18.29020 -17.54873 -17.25569 -16.80676 -16.29290 -15.96019 -15.44036 -15.19190 -14.82784 -14.70631 -14.57035 -14.18874 -14.04384 -13.84621 -13.66915 -13.52703 -13.23658 -13.17991 -13.07993 -13.03683 -12.87244 -12.78661 -12.65314 -12.39825 -12.27588 -12.17273 -12.14276 -11.75179 -11.68626 -11.51707 -11.46257 -10.81631 -10.59093 -10.07192 -9.80940 -8.19717 -6.30170 -0.42336 1.37188 1.41049 1.47851 2.01680 2.39271 2.56519 3.10723 3.14492 3.48106 3.58515 3.70062 3.91834 3.96793 4.28862 4.30999 4.36124 4.43451 4.47550 4.49707 4.57663 4.60806 4.70047 4.86374 4.90796 4.96123 4.99287 5.02823 5.11881 5.13654 5.15736 5.21442 5.33566 5.39443 5.44352 5.49356 5.58522 5.72361 5.97186 6.11685 6.77164 6.95129 7.37662 8.88131 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.005132 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.797817 B = 5455.001990 C = 6434.835981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.997 5.997 4 C 0.277 3.723 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.953 3.047 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.279 1.279 13 S 2.802 3.198 14 O -1.001 7.001 15 O -1.012 7.012 16 N -1.022 6.022 17 C 0.108 3.892 18 C -0.111 4.111 19 C -0.115 4.115 20 H 0.109 0.891 21 C 0.109 3.891 22 H 0.081 0.919 23 C -0.174 4.174 24 O -0.584 6.584 25 C 0.123 3.877 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.008 0.992 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.389 0.611 42 H 0.056 0.944 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.616 -10.408 -12.019 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.838 5.838 4 C 0.153 3.847 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.205 1.205 13 S 2.813 3.187 14 O -0.985 6.985 15 O -0.996 6.996 16 N -0.864 5.864 17 C -0.016 4.016 18 C -0.150 4.150 19 C -0.135 4.135 20 H 0.127 0.873 21 C 0.050 3.950 22 H 0.099 0.901 23 C -0.231 4.231 24 O -0.392 6.392 25 C -0.002 4.002 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.238 0.762 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.785 -9.936 -11.785 20.027 hybrid contribution -0.747 0.877 0.373 1.211 sum 12.038 -9.059 -11.411 18.900 Atomic orbital electron populations 1.22235 0.96628 1.02636 1.01477 1.21267 0.94742 0.80797 1.03098 1.57757 1.78966 1.24173 1.22920 1.18549 0.95533 0.90194 0.80412 1.21801 0.97135 1.32369 1.06665 0.92651 1.25728 1.00209 0.96502 0.96317 1.70012 1.31076 1.41478 1.14007 0.85697 0.80193 0.78927 0.77445 1.18649 1.20182 1.20516 1.01038 0.72642 0.72386 0.72631 1.93502 1.70861 1.76355 1.57743 1.93549 1.86278 1.33515 1.86218 1.59064 1.22621 1.36126 1.68580 1.22324 0.96063 0.86992 0.96234 1.22855 0.93968 0.94938 1.03232 1.22984 0.92985 0.97120 1.00458 0.87259 1.21959 0.93463 0.82002 0.97578 0.90051 1.22413 0.96859 1.01507 1.02325 1.86630 1.86316 1.25408 1.40873 1.21760 0.86073 0.93805 0.98585 0.93022 0.94382 0.89295 0.89325 0.89678 0.97419 0.95502 0.92480 0.90105 0.90218 0.90097 0.86122 0.90630 0.92310 0.89880 0.76188 0.92538 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.01 9.83 71.98 0.71 -5.30 16 2 C 0.13 4.32 6.09 86.38 0.53 4.85 16 3 N -1.00 -42.67 2.86 -519.85 -1.48 -44.16 16 4 C 0.28 14.48 5.12 85.64 0.44 14.91 16 5 C -0.54 -31.16 8.41 25.60 0.22 -30.94 16 6 H 0.06 3.19 6.89 -2.91 -0.02 3.17 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 9 Si 0.95 45.70 29.54 68.60 2.03 47.72 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 S 2.80 117.94 6.26 -56.49 -0.35 117.59 16 14 O -1.00 -42.28 16.69 -128.00 -2.14 -44.41 16 15 O -1.01 -52.71 16.69 -128.00 -2.14 -54.84 16 16 N -1.02 -32.16 3.75 -506.41 -1.90 -34.06 16 17 C 0.11 2.29 6.98 86.86 0.61 2.90 16 18 C -0.11 -1.60 5.46 31.99 0.17 -1.43 16 19 C -0.12 -2.06 2.69 -9.60 -0.03 -2.08 16 20 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 21 C 0.11 1.96 3.00 30.59 0.09 2.05 16 22 H 0.08 1.79 8.11 -2.38 -0.02 1.77 16 23 C -0.17 -1.92 9.33 71.98 0.67 -1.25 16 24 O -0.58 -12.56 13.15 -148.98 -1.96 -14.52 16 25 C 0.12 3.65 6.42 86.73 0.56 4.21 16 26 H 0.05 2.09 6.59 -2.39 -0.02 2.07 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 2.49 7.61 -2.39 -0.02 2.47 16 30 H 0.08 2.66 8.00 -2.38 -0.02 2.64 16 31 H 0.01 0.45 7.61 -2.38 -0.02 0.43 16 32 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 33 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 37 H 0.12 0.88 8.10 -2.39 -0.02 0.86 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.08 0.69 7.30 -2.39 -0.02 0.68 16 41 H 0.39 4.92 9.04 -74.06 -0.67 4.25 16 42 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.04 1.55 7.80 -2.38 -0.02 1.53 16 Total: -1.00 -78.04 358.88 -2.91 -80.95 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.32 Total: 12.07 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.43 Total: -10.95 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -3.10 Total: -133.60 kcal Atomic # 8 Polarization: -107.54 SS G_CDS: -6.23 Total: -113.77 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 117.94 SS G_CDS: -0.35 Total: 117.59 kcal Total: -78.04 -2.91 -80.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.956 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds