Wall clock time and date at job start Fri Apr 10 2020 17:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46947 * 2 1 4 4 C 1.46498 * 120.00113 * 275.00198 * 3 2 1 5 5 C 1.50696 * 109.46977 * 274.99853 * 4 3 2 6 6 H 1.08009 * 120.00473 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00054 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99938 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46865 * 60.00400 * 9 7 5 11 11 H 1.48504 * 109.46785 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47311 * 300.00205 * 9 7 5 13 13 S 1.65605 * 119.99620 * 95.00138 * 3 2 1 14 14 O 1.42096 * 106.39915 * 156.46029 * 13 3 2 15 15 O 1.42100 * 106.40207 * 23.54008 * 13 3 2 16 16 N 1.65600 * 107.21882 * 269.99685 * 13 3 2 17 17 C 1.47422 * 125.65212 * 269.96235 * 16 13 3 18 18 C 1.54907 * 104.83537 * 204.16505 * 17 16 13 19 19 C 1.55158 * 101.57757 * 322.98709 * 18 17 16 20 20 H 1.08997 * 110.87397 * 277.06717 * 19 18 17 21 21 C 1.53006 * 110.71976 * 153.86689 * 19 18 17 22 22 H 1.08996 * 109.46884 * 191.48312 * 21 19 18 23 23 C 1.52997 * 109.47127 * 71.47560 * 21 19 18 24 24 O 1.42906 * 109.46748 * 311.47542 * 21 19 18 25 25 C 1.47025 * 125.64663 * 89.99838 * 16 13 3 26 26 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47358 * 299.99586 * 1 2 3 28 28 H 1.08998 * 109.47366 * 59.99664 * 1 2 3 29 29 H 1.09001 * 109.46836 * 240.00358 * 2 1 3 30 30 H 1.08998 * 109.47366 * 120.00336 * 2 1 3 31 31 H 1.08993 * 109.47171 * 35.00231 * 4 3 2 32 32 H 1.09006 * 109.47086 * 155.00461 * 4 3 2 33 33 H 0.96993 * 119.99735 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.36244 * 323.00298 * 17 16 13 35 35 H 1.09009 * 110.36722 * 85.21133 * 17 16 13 36 36 H 1.09000 * 111.00566 * 204.91495 * 18 17 16 37 37 H 1.08997 * 111.00620 * 81.05865 * 18 17 16 38 38 H 1.09002 * 109.47153 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.46832 * 60.00321 * 23 21 19 40 40 H 1.09004 * 109.47261 * 300.00303 * 23 21 19 41 41 H 0.96698 * 113.99401 * 179.97438 * 24 21 19 42 42 H 1.09007 * 109.87824 * 59.49082 * 25 16 13 43 43 H 1.08998 * 110.01552 * 298.39740 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8524 2.3608 -3.0848 8 7 3.0275 3.1857 -3.6920 9 14 5.5095 1.9649 -3.8510 10 1 5.6003 0.5049 -4.1069 11 1 5.6512 2.7022 -5.1323 12 1 6.5943 2.3732 -2.9228 13 16 2.4122 2.1202 1.4288 14 8 3.3283 3.1570 1.1050 15 8 2.7095 1.0798 2.3499 16 7 1.0431 2.8642 1.9896 17 6 0.6298 4.2460 1.6846 18 6 -0.2871 4.6553 2.8642 19 6 -1.0370 3.3276 3.1509 20 1 -1.8841 3.2064 2.4757 21 6 -1.4970 3.2696 4.6090 22 1 -1.8353 2.2603 4.8434 23 6 -2.6479 4.2553 4.8203 24 8 -0.4079 3.6180 5.4662 25 6 0.0389 2.2562 2.8747 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3617 1.8099 -1.9452 32 1 2.0921 3.1804 -1.0755 33 1 3.2793 3.5882 -4.5377 34 1 1.5002 4.9003 1.6360 35 1 0.0787 4.2785 0.7446 36 1 -0.9821 5.4398 2.5649 37 1 0.3018 4.9656 3.7273 38 1 -2.9753 4.2143 5.8592 39 1 -3.4785 3.9895 4.1664 40 1 -2.3095 5.2646 4.5858 41 1 -0.6280 3.6026 6.4076 42 1 0.5064 1.9505 3.8108 43 1 -0.4141 1.3929 2.3875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336945096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:32 Heat of formation + Delta-G solvation = -129.607985 kcal Electronic energy + Delta-G solvation = -25117.019129 eV Core-core repulsion = 21516.890271 eV Total energy + Delta-G solvation = -3600.128858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.19519 -36.59187 -36.55907 -35.97173 -35.07445 -32.63705 -32.15192 -30.00275 -29.49970 -28.63670 -26.55572 -23.28817 -23.09004 -22.26422 -21.58583 -20.17050 -18.36150 -17.50823 -17.28014 -16.70813 -16.24078 -15.83325 -15.26763 -14.80468 -14.57323 -14.37073 -14.07531 -13.50968 -13.38613 -13.18041 -12.93255 -12.78122 -12.48302 -12.37438 -12.06136 -11.98050 -11.88278 -11.64996 -11.37642 -11.29017 -11.21847 -11.11167 -10.94652 -10.87353 -10.66940 -10.59072 -10.42735 -10.32224 -10.09464 -9.94532 -9.73064 -8.67742 -8.39847 -8.02223 -6.02879 -4.06477 1.25585 3.36270 3.39512 3.44548 3.58159 4.01004 4.19479 4.32886 4.48036 4.59032 4.77232 4.88711 4.99183 5.13664 5.23685 5.31513 5.34580 5.46844 5.50855 5.56627 5.66556 5.72556 5.76598 5.78231 5.82361 5.95248 5.98273 6.06188 6.11629 6.29866 6.36337 6.45013 6.61921 6.65110 6.77647 7.28954 7.46773 7.46898 7.68519 7.95042 8.25185 8.95537 9.58386 11.05696 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.004231 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.278541 B = 6615.536794 C = 6772.544677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.793 3.207 14 O -0.961 6.961 15 O -0.995 6.995 16 N -1.020 6.020 17 C 0.118 3.882 18 C -0.118 4.118 19 C -0.094 4.094 20 H 0.094 0.906 21 C 0.109 3.891 22 H 0.057 0.943 23 C -0.184 4.184 24 O -0.560 6.560 25 C 0.128 3.872 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.375 0.625 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 0.058 14.976 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.803 3.197 14 O -0.945 6.945 15 O -0.979 6.979 16 N -0.858 5.858 17 C -0.008 4.008 18 C -0.157 4.157 19 C -0.114 4.114 20 H 0.112 0.888 21 C 0.050 3.950 22 H 0.075 0.925 23 C -0.242 4.242 24 O -0.365 6.365 25 C 0.002 3.998 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.222 0.778 42 H 0.091 0.909 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.890 0.189 14.598 19.475 hybrid contribution 0.080 -0.236 -0.299 0.389 sum -12.809 -0.046 14.298 19.197 Atomic orbital electron populations 1.22321 0.97401 1.01331 1.02063 1.21129 0.93021 0.83373 1.03426 1.57831 1.80873 1.21271 1.23276 1.18993 0.97236 0.91069 0.78962 1.21471 1.02126 1.27658 1.05506 0.92275 1.24919 0.97331 0.94839 0.96858 1.69908 1.36137 1.30283 1.17239 0.86586 0.84293 0.78388 0.78361 1.20201 1.21189 1.19998 1.01611 0.72631 0.72897 0.72608 1.93614 1.58871 1.57858 1.84122 1.93506 1.83181 1.57710 1.63509 1.59303 1.41557 1.22804 1.62184 1.21976 0.98979 0.82209 0.97641 1.22737 0.98144 0.96003 0.98792 1.22330 0.98189 0.96482 0.94350 0.88797 1.21643 0.86255 0.96778 0.90351 0.92508 1.22499 0.98760 1.01015 1.01900 1.86592 1.37503 1.92405 1.20018 1.21666 0.88959 0.95093 0.94073 0.92286 0.93233 0.91965 0.89761 0.90707 0.94803 0.94625 0.92697 0.90073 0.91647 0.90608 0.89442 0.92506 0.91569 0.91509 0.77821 0.90916 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.12 2.11 6.40 -4.04 -0.03 2.09 16 3 N -0.99 -21.33 2.82 -115.66 -0.33 -21.66 16 4 C 0.26 6.61 5.10 -5.20 -0.03 6.58 16 5 C -0.53 -15.10 9.38 -34.44 -0.32 -15.42 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 S 2.79 59.69 6.31 -107.50 -0.68 59.01 16 14 O -0.96 -24.32 16.43 -57.17 -0.94 -25.26 16 15 O -0.99 -22.16 16.27 -57.17 -0.93 -23.09 16 16 N -1.02 -17.14 3.76 -111.41 -0.42 -17.56 16 17 C 0.12 1.75 7.10 -2.53 -0.02 1.73 16 18 C -0.12 -1.35 5.86 -24.58 -0.14 -1.49 16 19 C -0.09 -0.97 2.79 -88.78 -0.25 -1.22 16 20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 21 C 0.11 0.90 3.24 -26.73 -0.09 0.82 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 C -0.18 -1.17 9.43 37.16 0.35 -0.82 16 24 O -0.56 -5.30 11.51 -35.23 -0.41 -5.71 16 25 C 0.13 1.74 6.51 -3.06 -0.02 1.72 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.66 5.64 -51.93 -0.29 0.37 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 30 H 0.07 1.30 6.91 -51.93 -0.36 0.94 16 31 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.08 1.30 7.78 -51.93 -0.40 0.90 16 35 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.09 6.99 -51.93 -0.36 0.72 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.47 7.69 -51.93 -0.40 0.07 16 41 H 0.38 1.94 9.08 45.56 0.41 2.35 16 42 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 43 H 0.06 0.76 5.64 -51.93 -0.29 0.47 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -35.14 355.02 -9.14 -44.28 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.25 Total: -0.43 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.26 Total: -6.44 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.01 Total: -64.85 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -2.28 Total: -54.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 59.69 SS G_CDS: -0.68 Total: 59.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.14 -9.14 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336945096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.330 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds